Population structure and genetic diversity in green turtles nesting at Tortuguero,Costa Rica,based on mitochondrial DNA control region sequences

The green turtle (Chelonia mydas) nesting population at Tortuguero, Costa Rica, is the largest nesting aggregation in the Atlantic, by at least an order of magnitude. Previous mitochondrial DNA (mtDNA) surveys based on limited sampling (n = 41) indicated low genetic diversity and low gene flow with other Caribbean nesting colonies. Furthermore, a survey of nuclear DNA diversity invoked the possibility of substructure within the Tortuguero rookery. To evaluate these characteristics, mtDNA control region sequences were determined for green turtles nesting at Tortuguero in 2001 (n = 157) and 2002 (n = 235). The increased sample revealed three additional haplotypes; five haplotypes are now known for Tortuguero female green turtles. Analyses of molecular variance indicated that there was no significant spatial population structure along the 30-km nesting beach. In addition, no temporal population structure was detected either between the two nesting seasons or within the nesting season. As a result of the larger sample size and additional haplotypes, estimates of genetic separation among Caribbean nesting colonies have changed and the concordance of phylogenetic and phylogeographic patterns reported in the past for green turtles in the Greater Caribbean has weakened. The five haplotypes from Tortuguero represent 36% of the haplotypes identified in green turtle nesting aggregations in the Greater Caribbean and 17% of the haplotypes known to occur in nesting or foraging aggregations in the Greater Caribbean. Haplotype diversity (0.16) and nucleotide diversity (0.0034) for the Tortuguero population are substantially lower than those for the combined rookeries in the Greater Caribbean (0.44 and 0.0078, respectively). Although comprehensive evaluation of regional genetic diversity requires nuclear DNA data, our study indicates that conserving genetic diversity in Caribbean green turtles will require careful management of the smaller rookeries in addition to the Tortuguero rookery.     

Composition of green turtle feeding aggregations along the Japanese archipelago: implications for changes in composition with current flow

In order to develop effective conservation strategies for endangered migratory species, the link between feeding and breeding grounds needs to be clarified. In this study, the genetic compositions of consecutive Japanese feeding aggregations of green turtles (Chelonia mydas) along the Kuroshio Current were examined by mixed-stock analyses of mitochondrial DNA control-region sequences. The results indicated that the southern feeding aggregation around Yaeyama (24.3°N, 124.0°E) was sourced from various Pacific rookeries in the Yaeyama, Ogasawara, Western Pacific, and Indian Oceans and Southeast Asia. Among northern feeding aggregations, the Ginoza (26.5°N, 128.0°E) aggregation was also sourced from the Western Pacific Ocean, but the Nomaike (31.4°N, 130.1°E), Muroto (33.2°N, 134.2°E), and Kanto (35.6°N, 140.5°E) aggregations were contributed mostly by the closer Ogasawara rookeries. The reduced contribution from tropical Pacific rookeries to northern feeding aggregations and the significant correlation between genetic differentiation and geographical distance matrices of feeding aggregations indicated that most hatchlings from these regions transported by the Kuroshio Current settle in upstream feeding grounds along the Japanese archipelago, implying that current flow influences the composition of feeding aggregations. Differences in the composition of relatively close neritic feeding aggregations have important conservation implications, for which both regional and multinational conservation strategies are needed.     

Origins of green turtle (<Emphasis Type="Italic">Chelonia mydas</Emphasis>) feeding aggregations around Barbados,West Indies

Although green turtles (Chelonia mydas Linnaeus) do not nest in Barbados, the easternmost island in the Caribbean archipelago, juveniles are regularly seen foraging in nearshore waters. To examine the stock composition of this foraging population, mitochondrial (mt) DNA control region sequences were analysed from 60 juvenile (31–70 cm curved carapace length) green turtles and compared with data published for key nesting populations in the Atlantic, as well as other feeding grounds (FGs) in the Caribbean. Eight distinct haplotypes were recognised among the 60 individual green turtles sampled around Barbados. Three of the haplotypes found have only previously been reported from western Caribbean nesting beaches, and two only from South Atlantic beaches. The nesting beach origin of one of the Barbados FG haplotypes is as yet unidentified. Stock mixture analysis based on Bayesian methods showed that the Barbados FG population is a genetically mixed stock consisting of approximately equal contributions from nesting beaches in Ascension Island (25.0%), Aves Island/Surinam (23.0%), Costa Rica (19.0%), and Florida (18.5%), with a lesser but significant contribution from Mexico (10.3%). Linear regression analysis indicated no significant effects of rookery population size or distance of the rookery from the FG on estimated contributions from the source rookeries to the Barbados FG. Our data suggest that the similar-sized green turtles sampled on the Barbados FG are a mixed stock of more diverse origins than any previously sampled feeding aggregations in the Caribbean region. The relatively large contribution from the Ascension Island rookery to the Barbados FG indicates that hatchlings from distant rookeries outside the Caribbean basin enter the North Atlantic gyre and become a significant part of the pool from which eastern Caribbean foraging populations are derived. These data support a life cycle model that incorporates a tendency of immatures to migrate from their initial foraging grounds at settlement towards suitable foraging grounds closer to their natal rookeries as they mature.Communicated by P.W. Sammarco, Chauvin     

Twenty-Six Years of Green Turtle Nesting at Tortuguero, Costa Rica: An Encouraging Trend

The green turtle ( Chelonia mydas ) population that nests at Tortuguero, Costa Rica, is the largest in the Atlantic by at least an order of magnitude. Surveys to monitor the nesting activity on the northern 18 km of the 36-km beach were initiated in 1971 and extended to the entire beach in 1986. From the survey data, we estimated the total number of nesting emergences on the northern 18 km for each year from 1971 through 1996. Evaluation of the trend in nesting emergences indicated a relatively consistent increase from 1971 to the mid-1980s, constant or perhaps decreasing nesting during the late 1980s, and then resumption of an upward trend in the 1990s. Evaluation of trends in sea turtle nesting populations requires many years of data because of the large degree of annual variation in nesting numbers. The trends reported in this study must be evaluated with caution for several reasons. First, if the mean number of nests deposited by each female each year (clutch frequency) varies significantly among years, changes in the number of nesting emergences among years could reflect changes in the number of nesting females, clutch frequency, or both. Second, we only assessed the trend in one segment of the population (mature females), which may or may not represent the trend of the entire green turtle population and which, because of late maturity, may not reflect changes in juvenile mortality for many years. Third, survey frequency, and thus confidence in annual estimates, varied among years. The upward population trend must be assessed from the perspective of the catastrophic decline that the Caribbean green turtle populations have experienced since the arrival of Europeans. If careful management is continued in Costa Rica and adopted throughout the region, the collapse of the Caribbean green turtle populations—which seemed imminent in the 1950s—can be avoided.     

Demographic composition of the feeding population of juvenile loggerhead sea turtles (Caretta caretta) off Charleston,South Carolina: evidence from mitochondrial DNA markers

To determine the origin of juvenile loggerhead turtles (Caretta caretta) that occupy the Charleston Harbor Entrance Channel at Charleston, South Carolina, USA, mitochondrial DNA restriction-fragment length polymorphisms from this feeding population were compared to haplotypes from candidate nesting populations. Previous studies have defined two major nesting populations in the southeastern USA, one corresponding to Florida and the other to Georgia/South Carolina. These nesting populations are distinguished by both unique haplotypes and frequency distributions of common haplotypes. The frequency distribution of haplotypes in the juvenile feeding-ground population was significantly different from both nesting populations, implying that the feeding aggregate is drawn from two or more nesting populations. Assuming that these turtles are derived exclusively from rookeries in the southeastern USA, a maximum likelihood estimator indicates that approximately half are from the Florida rookery and half are from the northern (Georgia/South Carolina) rookery complex. Because 91% of nesting in the southeastern USA occurs in Florida rookeries and 8% in the northern complex, the 50:50 ratio indicates that juvenile turtles from Georgia and South Carolina tend to feed preferentially near their respective rookery locations. Human encroachment on this feeding habitat may pose an especially high risk to the smaller Georgia/South Carolina rookeries.     

The effect of incubation temperature on hatchling quality in the olive ridley turtle, Lepidochelys olivacea, from Alas Purwo National Park, East Java, Indonesia: implications for hatchery management

Nest protection through egg relocation from natural nests into protected hatcheries is a common practice used at rookeries around the world to increase hatchling recruitment into sea turtle populations. However, rarely have the impacts of this practice on hatchling recruitment and quality been assessed. This study investigated the influences of the thermal nest environment of olive ridley turtles Lepidochelys olivacea on emergence success and quality of hatchlings of hatchery nests in Alas Purwo National Park, East Java, Indonesia (2009 and 2010 nesting seasons). Nest temperatures above 34?°C for at least 3 consecutive days during incubation in the hatchery resulted in decreases in emergence success and locomotor performance of hatchlings. The use of the hatchery is recommended due to extremely high predation rate of nests left on the beach; however, altering hatchery management practice by spacing nests one meter apart and providing shade should improve hatchery outcomes now and into the future.     

The spatial ecology of juvenile loggerhead turtles (Caretta caretta) in the Indian Ocean sheds light on the “lost years” mystery

While our understanding of the early oceanic developmental stage of sea turtles has improved markedly over recent decades, the spatial context for this life history stage remains unknown for Indian Ocean loggerhead turtle populations. To address this gap in our knowledge, 18 juvenile loggerheads were satellite tracked from Reunion Island (21.2°S, 55.3°E) between 2007 and 2011. Nine turtles swam north toward Oman (20.5°N, 58.8°E), where one of the world’s largest rookeries of loggerheads is located. Three individuals traveled south toward South Africa and Madagascar, countries that also host loggerhead nesting grounds. Fourteen of the transmitters relayed diving profiles. A dichotomy between diurnal and nocturnal diving behavior was observed with a larger number of shorter dives occurring during the day. Diving behavior also differed according to movement behavior as individuals spent more time in subsurface waters (between 10 and 20 m) during transit phases. The study provides an understanding of the oceanic movement behavior of juvenile loggerheads in the Indian Ocean that suggests the existence of an atypical trans-equatorial developmental cycle for the species at the ocean basin scale in the Indian Ocean. These results address a significant gap in the understanding of loggerhead oceanic movements and may help with the conservation of the species.     

Some distinguishing characteristics of nesting beaches of the green turtle Chelonia mydas on North West Cape Peninsula,Western Australia

On an 85 km stretch of coastline along the western and northwestern edge of North West Cape Peninsula, Western Australia, are numerous beaches used for nesting by the green turtle Chelonia mydas. Many other beaches in the area are not so used. Nesting beaches displayed three characteristics that distinguished them from non-nesting beaches: the salinity of the sand moisture at nesting depth was lower, the salt content of surface sand was lower, and the beaches were sheltered from prevailing winds. Several beaches on which turtles did not nest exhibited these characteristics, but possessed sand platforms of reduced elevation above sea level. These observations are discussed in relation to the question of what cues green turtles use in selecting nesting beaches.     

Genetic structure of the southeastern United States loggerhead turtle nesting aggregation: evidence of additional structure within the peninsular Florida recovery unit

The southeastern United States supports one of two large loggerhead turtle (Caretta caretta) nesting aggregations worldwide and is therefore critical to global conservation and recovery efforts for the species. Previous studies have established the presence of four demographically distinct nesting populations (management units) corresponding to beaches from (1) North Carolina through northeastern Florida, (2) peninsular Florida, (3) the Dry Tortugas, and (4) northwest Florida. Temporal and geographic genetic structure of the nesting aggregation was examined utilizing partial mitochondrial control region haplotype frequencies from 834 samples collected over the 2002 through 2008 nesting seasons from 19 beaches as well as previously published haplotype data. Most rookeries did not exhibit interannual genetic variation. However, the interannual variation detected did significantly impact the interpretation of spatial genetic structure in northeastern Florida. Based on pairwise F _ST comparisons, exact tests of population differentiation, and analysis of molecular variance, the present study upholds the distinctiveness of the four currently recognized management units and further supports recognition of discrete central eastern, southern (southeastern and southwestern), and central western Florida management units. Further subdivision may be warranted, but more intensive genetic sampling is required. In addition, tools such as telemetry and mark-recapture are needed to complement genetic data and overcome limitations of genetic markers in resolving loggerhead turtle rookery connectivity in the southeastern USA.     

Genetic heterogeneity among <Emphasis Type="Italic">Eurytemora affinis</Emphasis> populations in Western Europe

Evolutionary diversification of the broadly distributed copepod sibling species complex Eurytemora affinis has been documented in the northern hemisphere. However, the fine scale geographic distribution, levels of genetic subdivision, evolutionary, and demographic histories of European populations have been less explored. To gain information on genetic subdivision and to evaluate heterogeneity among European populations, we analyzed samples from 8 locations from 58° to 45°N and 0° to 23°E, using 549 base pairs of the mitochondrial cytochrome oxidase subunit I (COI) gene. We discovered three distinct lineages of E. affinis in Western Europe, namely the East Atlantic lineage, the North Sea/English Channel (NSEC) lineage, and the Baltic lineage. These geographically separated lineages showed sequences divergence of 1.7–2.1%, dating back 1.9 million years (CI: 0.9–3.0 My) with no indication of isolation by distance. Genetic divergence in Europe was much lower than among North American lineages. Interestingly, genetic structure varied distinctively among the three lineages: the East Atlantic lineage was divided between the Gironde and the Loire populations, the NSEC lineage comprised one single population unit spanning the Seine, Scheldt and Elbe rivers and the third lineage was restricted to the Baltic Proper (Sweden). We revealed high haplotype diversity in the East Atlantic and the Baltic lineages, whereas in the NSEC lineage haplotype diversity was comparatively low. All three lineages showed signs of at least one demographic expansion event during Pleistocene glaciations that marked their genetic structure. These results provide a preliminary overview of the genetic structure of E. affinis in Europe.     

Modelling the fate of marine turtle hatchlings

The SLIM oceanographic model was used to examine the fate of hatchling flatback turtles (Natator depressus) in the first two weeks of their dispersal starting at Wild Duck Island, a major turtle-nesting site in the central Great Barrier Reef region of Australia. We ran simulations to investigate the effects of spring versus neap tides, hatchling's swimming behaviour during their first three days at sea, and the location of nesting beaches. The model predicted that up to 50% of the turtle hatchlings entering the sea from the windward, southern beach remained after 14 days in shallow, nearshore waters, irrespective of tides and swimming. These waters are turbid and may be inhospitable to hatchlings. In contrast >80% of hatchlings dispersing from the leeward, northern beach were dispersed to deeper water (10-40 m) in a quasi-stationary dispersion core centred around 10 km north of the nesting beach after 14 days and the offshore spread of the turtle plume was enhanced by the hatchling's seaward swimming during the first three days. This was due to the presence of a coastal boundary layer and a stagnation zone around the northern side of island, but not the southern side. The model confirmed that dispersal from eastern Queensland flatback turtle rookeries is restricted to the lagoons and coastal waters, and that water circulation and hatchling's swimming control dispersion. The model explains why more turtles nest on the northern than the southern side. This study highlights the usefulness of oceanographic models to increase knowledge about a cryptic life stage of marine turtles.     

Estimation of age at maturation and growth of Atlantic green turtles (Chelonia mydas) using skeletochronology

Despite the vast amount of research on threatened and endangered green turtle populations, some uncertainty regarding stage durations, growth rates, and age at maturation remains. We used skeletochronology to address this gap in knowledge for green turtle populations in the North Atlantic Ocean that use coastal waters along the southeastern U.S. as developmental habitat. Oceanic stage duration was estimated at 1–7 years ( [`(\textX)] \overline{\text{X}}  = 3 years). Several growth models, including von Bertalanffy, logistic, Gompertz, and power functions were evaluated for describing sex-specific length-at-age data. Ages at maturation estimated using mean size at nesting for females from each genetic sub-population contributing juveniles to this neritic foraging area were 44 years (Florida), 42.5 years (Costa Rica), and 42 years (Mexico), which were higher than previously reported ages. This implies that nesting populations comprising primarily individuals utilizing foraging grounds in the southeastern U.S. may take longer to recover than previously estimated.     

Are anthropogenic factors affecting nesting habitat of sea turtles? The case of Kanzul beach,Riviera Maya-Tulum (Mexico)

Marine coast modification and human pressure affects many species, including sea turtles. In order to study nine anthropogenic impacts that might affect nesting selection of females, incubation and hatching survival of loggerhead (Caretta caretta) and green turtle (Chelonia mydas), building structures were identified along a 5.2 km beach in Kanzul (Mexico). A high number of hotels and houses (88; 818 rooms), with an average density of 16.6 buildings per kilometer were found. These buildings form a barrier which prevents reaching the beach from inland, resulting in habitat fragmentation. Main pressures were detected during nesting selection (14.19% of turtle nesting attempts interrupted), and low impact were found during incubation (0.77%) and hatching (4.7%). There were three impacts defined as high: beach furniture that blocks out the movement of hatchlings or females, direct pressure by tourists, and artificial beachfront lighting that can potentially mislead hatchlings or females. High impacted areas showed lowest values in nesting selection and hatching success. Based on our results, we suggest management strategies to need to be implemented to reduce human pressure and to avoid nesting habitat loss of loggerhead and green turtle in Kanzul, Mexico.     

Some observations of sea turtle nesting activity in Costa Rica

Low level aerial observations were used to obtain synoptic records of the distribution of sea turtle nesting activity along both coasts of Costa Rica. Pertinent environmental information was simultaneously recorded including beach characteristics, river effluents, and evidence of coastal currents. Other correlative information was obtained from detailed maps, current charts, and climatological data. On the Caribbean coast, as expected, green turtle (Chelonia mydas) nesting was concentrated on the beaches between the Tortuguero and Parismina Rivers. On the Pacific coast, two major nesting beaches for the Pacific ridley Lepidochelys olivacea were found, each having over 100 thousand turtles aggregated offshore during the peak period between September and November. Aggregations were present at least from July through December. Massed nesting occurs each year on these same beaches and the event is known as the salida de flota by the natives of Guanacaste Province. Numerous less important nesting beaches were also found. Nesting density did not correlate well with beach quality but, instead, appeared to be related to the proximity of the beach to offshore currents. Oceanic current systems apparently facilitate the transport of sea turtles to the general vicinity of the important nesting beaches on both coasts of Coata Rica.Contribution No. 1557 from the Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, Florida, USA.     

Genetic composition of a green turtle (Chelonia mydas) feeding ground population: evidence for multiple origins

Migratory marine turtles are extremely difficult to track between their feeding and nesting areas, and the link between juvenile and adult habitats is generally unknown. To assess the composition of a feeding ground (FG) population of juvenile green turtles (Cheloniamydas Linnaeus), mitochondrial DNA control region sequences were examined in 80 post-pelagic individuals (straight carapace length = 31 to 67 cm) sampled in September 1992 from Great Inagua, Bahamas, and compared to those of 194 individuals from nine Atlantic and Mediterranean nesting colonies. Evidence from genetic markers, haplotype frequencies, and maximum likelihood (ML) analyses are concordant in indicating that multiple colonies contribute to the Bahamian FG population. ML analyses suggested that most Bahamian FG juveniles originated in the western (79.5%) and eastern (12.9%) Caribbean regions, and these proportions are roughly comparable to the size of candidate rookeries. These data support a life-cycle model in which individuals become pooled in post-hatchling (pelagic) and juvenile (benthic) habitats as a consequence of ocean currents and movement among FGs. A substantial harvest of immature turtles on their feeding pastures will influence the reproductive success of contributing nesting populations over a wide geographic scale. Received: 1 April 1997 / Accepted: 14 October 1997     

Predicting the Impact of Sea-Level Rise on Caribbean Sea Turtle Nesting Habitat

Abstract:  The projected rise in sea level is likely to increase the vulnerability of coastal zones in the Caribbean, which are already under pressure from a combination of anthropogenic activities and natural processes. One of the major effects will be a loss of beach habitat, which provides nesting sites for endangered sea turtles. To assess the potential impacts of sea-level rise on sea turtle nesting habitat, we used beach profile measurements of turtle nesting beaches on Bonaire, Netherlands Antilles, to develop elevation models of individual beaches in a geographic information system. These models were then used to quantify areas of beach vulnerable to three different scenarios of a rise in sea level. Physical characteristics of the beaches were also recorded and related to beach vulnerability, flooding, and nesting frequency. Beaches varied in physical characteristics and therefore in their vulnerability to flooding. Up to 32% of the total current beach area could be lost with a 0.5-m rise in sea level, with lower, narrower beaches being the most vulnerable. Vulnerability varied with land use adjacent to the beach. These predictions about loss of nesting habitat have important implications for turtle populations in the region.     

Satellite telemetry reveals behavioural plasticity in a green turtle population nesting in Sri Lanka

Satellite transmitters were deployed on ten green turtles (Chelonia mydas) nesting in Rekawa Sanctuary (RS-80.851°E 6.045°N), Sri Lanka, during 2006 and 2007 to determine inter-nesting and migratory behaviours and foraging habitats. Nine turtles subsequently nested at RS and demonstrated two inter-nesting strategies linked to the location of their residence sites. Three turtles used local shallow coastal sites within 60 km of RS during some or all of their inter-nesting periods and then returned to and settled at these sites on completion of their breeding seasons. In contrast, five individuals spent inter-nesting periods proximate to RS and then migrated to and settled at distant (>350 km) shallow coastal residence sites. Another turtle also spent inter-nesting periods proximate to RS and then migrated to a distant oceanic atoll and made forays into oceanic waters for 42 days before transmissions ceased. This behavioural plasticity informs conservation management beyond protection at the nesting beach.     

Population structure of loggerhead turtle (Carettacaretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences

Mitochondrial (mt) DNA control region sequences were analyzed for 249 Atlantic and Mediterranean loggerhead turtles (Carettacaretta Linnaeus, 1758) to elucidate nesting population structure and phylogeographic patterns. Ten haplotypes were resolved among individuals sampled between 1987 and 1993, from ten major loggerhead nesting areas in the region. Two distinct phylogenetic lineages were distinguished, separated by an average of 5.1% sequence divergence. Haplotype frequency comparisons between pairs of populations showed significant differentiation between most regional nesting aggregates and revealed six demographically independent groups, corresponding to nesting beaches from: (1) North Carolina, South Carolina, Georgia and northeast Florida, USA; (2) southern Florida, USA; (3) northwest Florida, USA; (4) Quintana Roo, Mexico; (5) Bahia, Brazil; and (6) Peloponnesus Island, Greece. The distribution of mtDNA haplotypes is consistent with a natal homing scenario, in which nesting colonies separated by a few hundred kilometers represent isolated reproductive aggregates. However, a strong exception to this pattern was observed in the first group defined by mtDNA data (North Carolina to northeast Florida), which included samples from four nesting locations spread across thousands of kilometers of coastline. These locations were characterized by a single haplotype in 104 out of 105 samples, providing inadequate resolution of population divisions. In view of the subdivisions observed elsewhere, we attribute the lack of differentiation between North Carolina and northeast Florida to recent colonization of these warm temperate coastlines (after the Wisconsin glaciation) not to ongoing gene flow among spatially distinct nesting locations. The relationships among observed haplotypes suggest a biogeographic scenario defined by climate, natal homing, and rare dispersal events. The redefined relationships among nesting aggregations in the western Atlantic region (southeastern USA and adjacent Mexico) prompt a reconsideration of management strategies for nesting populations and corresponding habitats in this region. Received: 28 October 1996 / Accepted: 24 October 1997     

Dune vegetation fertilization by nesting sea turtles

Sea turtle nesting presents a potential pathway to subsidize nutrient-poor dune ecosystems, which provide the nesting habitat for sea turtles. To assess whether this positive feedback between dune plants and turtle nests exists, we measured N concentration and delta15N values in dune soils, leaves from a common dune plant (sea oats [Uniola paniculata]), and addled eggs of loggerhead (Caretta caretta) and green turtles (Chelonia mydas) across a nesting gradient (200-1050 nests/km) along a 40.5-km stretch of beach in east central Florida, USA. The delta15N levels were higher in loggerhead than green turtle eggs, denoting the higher trophic level of loggerhead turtles. Soil N concentration and delta15N values were both positively correlated to turtle nest density. Sea oat leaf tissue delta15N was also positively correlated to nest density, indicating an increased use of augmented marine-based nutrient sources. Foliar N concentration was correlated with delta15N, suggesting that increased nutrient availability from this biogenic vector may enhance the vigor of dune vegetation, promoting dune stabilization and preserving sea turtle nesting habitat.     

The malaria parasite Plasmodium relictum in the endemic avifauna of eastern Cuba

Island populations are vulnerable to introduced pathogens, as evidenced by extinction or population decline of several endemic Hawaiian birds caused by the malaria parasite, Plasmodium relictum (order Haemosporida). We analyzed blood samples from 363 birds caught near Guantánamo Bay, Cuba, for the presence of haemosporidian infections. We characterized parasite lineages by determining nucleotide variation of the parasite's mitochondrial cyt b gene. Fifty‐nine individuals were infected, and we identified 7 lineages of haemosporidian parasites. Fifty individuals were infected by 6 Haemoproteus sp. lineages, including a newly characterized lineage of Haem. (Parahaemoproteus) sp. CUH01. Nine individuals carried the P. relictum lineage GRW4, including 5 endemic Cuban Grassquits (Tiaris canorus) and 1 migratory Cape May Warbler (Setophaga tigrina). A sequence of the merozoite surface protein gene from one Cuban Grassquit infected with GRW4 matched that of the Hawaiian haplotype Pr9. Our results indicate that resident and migratory Cuban birds are infected with a malaria lineage that has severely affected populations of several endemic Hawaiian birds. We suggest GRW4 may be associated with the lack of several bird species on Cuba that are ubiquitous elsewhere in the West Indies. From the standpoint of avian conservation in the Caribbean Basin, it will be important to determine the distribution of haemosporidian parasites, especially P. relictum GRW4, in Cuba as well as the pathogenicity of this lineage in species that occur and are absent from Cuba.