AQUATIC HABITAT CONDITION INDEX,STREAM TYPE,AND LWESTOCK BANK DAMAGE IN NORTHERN NEVADA1

ABSTRACT: The quality of stream habitat varies for a variety of natural and anthropogenic reasons not identified by a condition index. However, many people use condition indices to indicate management needs or even direction. To better sort natural from livestock influences, stream types and levels of ungulate bank damage were regulated to estimates of aquatic habitat condition index and stream width parameters in a large existing stream inventory data base. Pool/riffle ratio, pool structure, stream bottom materials, soil stability, and vegetation type varied significantly with stream type. Pool/riffle ratio, soil and vegetation stability varied significantly with ungulate bank damage level. Soil and vegetation stability were highly cross-correlated. Riparian area width did not vary significantly with either stream type or ungulate bank damage. Variation among stream types indicates that riparian management and monitoring should be stream type and reach specific.     

Assessment of Changes in Stream and Riparian Conditions of the Marys River Basin,Nevada1

Abstract: Stream and riparian managers must effectively allocate limited financial and personnel resources to monitor and manage riparian ecosystems. They need to use management strategies and monitoring methods that are compatible with their objectives and the response potential of each stream reach. Our objective is to help others set realistic management objectives by comparing results from different methods used to document riparian recovery across a diversity of stream types. The Bureau of Land Management Elko Field Office, Nevada, used stream survey, riparian proper functioning condition (PFC) assessment, repeat photographic analysis, and stream and ecological classification to study 10 streams within the Marys River watershed of northeast Nevada during all or parts of 20 years. Most riparian areas improved significantly from 1979 to 1992‐1993 and then additionally by 1997‐2000. Improvements were observed in riparian and habitat condition indices, bank cover, and stability, pool quality, bank angle, and depth of undercut bank. Interpretation of repeat photography generally confirmed results from stream survey and should be part of long‐term riparian monitoring. More attributes of Rosgen stream types C and E improved than of types B and F. A and Gc streams did not show significant improvement. Alluvial draws and alluvial valleys improved in more ways than V‐erosional canyons and especially V‐depositional canyons. Stream survey data could not be substituted for riparian PFC assessment. Riparian PFC assessments help interpret other data.     

MORPHOLOGICAL FEATURES OF SMALL STREAMS: SIGNIFICANCE AND FUNCTION1

ABSTRACT: Throughout the United States, land managers are becoming increasingly aware of the importance of small streams for a wide range of resource benefits. Where channel morphology is modified or structural features are added, stream dynamics and energy dissipation need to be considered. Unit stream power, defined here as the time-rate loss of potential energy per unit mass of water, can be reduced by adding stream obstructions, increasing channel sinuosity, or increasing flow resistance with large roughness elements such as woody root systems, logs, boulders, or bedrock. Notable morphological features of small streams are pools, riffles, bed material, and channel banks. Pools, which vary in size, shape, and causative factors, are important rearing habitat for fish. Riffles represent storage locations for bed material and are generally utilized for spawning. The particle sizes and distributions of bed material influence channel characteristics, bedload transport, food supplies for fish, spawning conditions, cover, and rearing habitat. Riparian vegetation helps stabilize channel banks and contributes in various ways to fish productivity. Understanding each stream feature individually and in relation to all others is essential for proper stream management. Although engineered structures for modifying habitat may alter stream characteristics, channel morphology must ultimately be matched to the hydraulic, geologic, and (especially) vegetative constraints of a particular location.     

Identifying Linkages Between Land Use,Geomorphology, and Aquatic Habitat in a Mixed-Use Watershed

The potential impacts of land use on large woody debris (LWD) were examined in Sourdough Creek Watershed, a rapidly growing area encompassing Bozeman, Montana, USA. We identified six land classes within a 250 m buffer extending on either side of Sourdough Creek and assessed aquatic habitat and geomorphologic variables within each class. All LWD pieces were counted, and we examined 14 other variables, including undercut bank, sinuosity, and substrate composition. LWD numbers were generally low and ranged from 0 to 8.2 pieces per 50 m of stream. Linear regression showed that LWD increased with distance from headwaters, riparian forest width, and sinuosity in four of the six land classes. Statistically significant differences between land classes for many aquatic habitat and geomorphologic variables indicated the impacts of different land uses on stream structure. We also found that practices such as active wood removal played a key role in LWD abundance. This finding suggests that managers should prioritize public education and outreach concerning the importance of in-stream wood, especially in mixed-use watersheds where wood is removed for either aesthetic reasons or to prevent stream flooding.     

Spectrally Driven Classification of High Spatial Resolution,Hyperspectral Imagery: A Tool for Mapping In-Stream Habitat

Streams represent an essential component of functional ecosystems and serve as sensitive indicators of disturbance. Accurate mapping and monitoring of these features is therefore critical, and this study explored the potential to characterize aquatic habitat with remotely sensed data. High spatial resolution, hyperspectral imagery of the Lamar River, Wyoming, USA, was used to examine the relationship between spectrally defined classes and field-mapped habitats. Advantages of this approach included enhanced depiction of fine-scale heterogeneity and improved portrayal of gradational zones between adjacent features. Certain habitat types delineated in the field were strongly associated with specific image classes, but most included areas of diverse spectral character; spatially buffering the field map polygons strengthened this association. Canonical discriminant analysis (CDA) indicated that the ratio of the variability among groups to that within a group was an order of magnitude greater for spectrally defined image classes (20.84) than for field-mapped habitat types (1.82), suggesting that unsupervised image classification might more effectively categorize the fluvial environment. CDA results also suggested that shortwave-infrared wavelengths were valuable for distinguishing various in-stream habitats. Although hyperspectral stream classification seemed capable of identifying more features than previously recognized, the technique also suggested that the intrinsic complexity of the Lamar River would preclude its subdivision into a discrete number of classes. Establishing physically based linkages between observed spectral patterns and ecologically relevant channel characteristics will require additional research, but hyperspectral stream classification could provide novel insight into fluvial systems while emerging as a potentially powerful tool for resource management.     

TEMPORAL AND GEOMORPHIC VARIATIONS OF STREAM STABILITY AND MORPHOLOGY: MAHOGANY CREEK,NEVADA1

ABSTRACT: Detailed studies of long-term management impacts on rangeland streams are few because of the cost of obtaining detailed data replicated in time. This study uses government agency aquatic habitat, stream morphologic, and ocular stability data to assess land management impacts over four years on three stream reaches of an important rangeland watershed in northwestern Nevada. Aquatic habitat improved as riparian vegetation reestablished itself with decreased and better controlled livestock grazing. However, sediment from livestock disturbances and road crossings and very low stream flows limited the rate of change. Stream type limited the change of pool variables and width/depth ratio, which are linked to gradient and entrenchment. Coarse woody debris removal due to previous management limited pool recovery. Various critical-element ocular stability estimates represented changes with time and differences among reaches very well. Ocular stability variables tracked the quantitative habitat and morphologic variables well enough to recommend that ocular surveys be used to monitor changes with time between more intensive aquatic surveys.     

FORUM: Restoration of Stream Habitats in the Western United States: Restoration as Reexpression of Habitat Capacity

/ Ecological restoration is increasingly invoked as a tool for the maintenance and regeneration of biodiversity. Yet the conceptual foundations and assumptions underlying many restoration management activities are frequently unclear or unstated. Unforeseen, undesirable consequences of restoration activities may emerge as a result. A general conceptual framework for restoration is needed to better accommodate dynamic habitat systems and evolving biota in restoration strategies. A preliminary framework for stream habitat restoration emphasizing stream habitat-biota development is proposed. As developing systems, streams and stream biota exhibit temporal behaviors that change with stream environments. Underlying the dynamic development of streams is potential capacity. Streams express this capacity as an array of habitats over time and across the landscape. Human land uses in the western United States have rapidly altered aquatic habitats and the processes that shape habitat. As a result, the diversity of native fishes and their habitats has been suppressed. Restoration is fundamentally about allowing stream systems to reexpress their capacities. Several steps are provided to guide stream restoration activities. Key tasks include: identification of the historic patterns of habitat development; identification of developmental constraints; relief of those constraints; classification of sensitive, critical, or refuge habitats; protection of the developmental diversity that remains; and monitoring of biotic responses to habitat development. KEY WORDS: Stream habitat; Stream biota; System capacity; System development; Restoration; Classification     

Improvements in Fluvial Stability Associated with Two‐Stage Ditch Construction in Mower County,Minnesota

Water quality and stream habitat in agricultural watersheds are under greater scrutiny as hydrologic pathways are altered to increase crop production. Agricultural drainage ditches function to remove water quickly from farmed landscapes. Conventional ditch designs lack the form and function of natural stream systems and tend to be unstable and provide inadequate habitat. In October of 2009, 1.89 km of a conventional drainage ditch in Mower County, Minnesota, was converted to an alternative system with a two‐stage channel to investigate the improvements in water quality, stability, and habitat. Longitudinal surveys show a 12‐fold increase in the pool‐riffle formation. Cross‐sectional surveys show an average increase in bankfull width of approximately 10% and may be associated to an increased frequency in large storm events. The average increase in bankfull depth was estimated as 18% but is largely influenced by pool formation. Rosgen Stability Analyses show the channel to be highly stable and the banks at a low risk of erosion. The average bankfull recurrence interval was estimated to be approximately 0.30 years. Overall, the two‐stage ditch design demonstrates an increase in fluvial stability, creating a more consistent sediment budget, and increasing the frequency of important instream habitat features, making this best management practice a viable option for addressing issues of erosion, sediment imbalance, and poor habitat in agricultural drainage systems.     

Reduced complexity models for regional aquatic habitat suitability assessment

Generalizable methods that identify suitable aquatic habitat across large river basins and regions are needed to inform resource management. Habitat suitability models intersect environmental variables to predict species occurrence, but are often data intensive and thus are typically developed at small spatial scales. This study estimated mean monthly aquatic habitat suitability throughout Utah (USA) for Bonneville Cutthroat Trout (Oncorhynchus clarkii utah) and Bluehead Sucker (Catostomus discobolus) with publicly available, geospatial datasets. We evaluated 15 habitat suitability models using unique combinations of percent of mean annual discharge, velocity, gradient, and stream temperature. Environmental variables were validated with observed conditions and species presence observations to verify habitat suitability estimates. Stream temperature, gradient, and discharge best predicted Bonneville Cutthroat Trout presence, and gradient and discharge best predicted Bluehead Sucker presence. Simple aquatic habitat suitability models outperformed models that used only streamflow to estimate habitat for both species, and are useful for conservation planning and water resources decision-making. This modeling approach could enable resource managers to prioritize stream restoration across vast regions within their management domain, and is potentially compatible with water management modeling to improve ecological objectives in management models.     

DIAGNOSTIC APPROACH TO STREAM CHANNEL ASSESSMENT AND MONITORING1

ABSTRACT: We suggest that a diagnostic procedure, not unlike that followed in medical practice, provides a logical basis for stream channel assessment and monitoring. Our argument is based on the observation that a particular indicator or measurement of stream channel condition can mean different things depending upon the local geomorphic context and history of the channel in question. This paper offers a conceptual framework for diagnosing channel condition, evaluating channel response, and developing channel monitoring programs. The proposed diagnostic framework assesses reach‐level channel conditions as a function of location in the channel network, regional and local biogeomorphic context, controlling influences such as sediment supply and transport capacity, riparian vegetation, the supply of in‐channel flow obstructions, and disturbance history. Field assessments of key valley bottom and active channel characteristics are needed to formulate an accurate diagnosis of channel conditions. A similar approach and level of understanding is needed to design effective monitoring programs, as stream type and channel state greatly affect the type and magnitude of channel response to changes in discharge and sediment loads. General predictions are made for five channel types with respect to the response of various stream characteristics to an increase in coarse sediment inputs, fine sediment inputs, and the size and frequency of peak flows, respectively. These predictions provide general hypotheses and guidance for channel assessment and monitoring. However, the formulation of specific diagnostic criteria and monitoring protocols must be tailored to specific geographic areas because of the variability in the controls on channel condition within river basins and between regions. The diagnostic approach to channel assessment and monitoring requires a relatively high level of training and experience, but proper application should result in useful interpretation of channel conditions and response potential.     

EFFECTIVENESS OF TIMBER HARVEST PRACTICES FOR CONTROLLING SEDIMENT RELATED WATER QUALITY IMPACTS1

ABSTRACT: Timber harvest best management practices (BMPs) in Washington State were evaluated to determine their effectiveness at achieving water quality standards pertaining to sediment related effects. A weight‐of‐evidence approach was used to determine BMP effectiveness based on assessment of erosion with sediment delivery to streams, physical disturbance of stream channels, and aquatic habitat conditions during the first two years following harvest. Stream buffers were effective at preventing chronic sediment delivery to streams and physical disturbance of stream channels. Practices for ground‐based harvest and cable yarding in the vicinity of small streams without buffers were ineffective or only partially effective at preventing water quality impacts. The primary operational factors influencing BMP effectiveness were: the proximity of ground disturbing activities to streams; presence or absence of designated stream buffers; the use of special timber falling and yarding practices intended to minimize physical disturbance of stream channels; and timing of harvest to occur during snow cover or frozen ground conditions. Important site factors included the density of small streams at harvest sites and the steepness of inner stream valley slopes. Recommendations are given for practices that provide a high confidence of achieving water quality standards by preventing chronic sediment delivery and avoiding direct stream channel disturbance.     

CHANNEL RESPONSE FROM SHRUB DOMINATED RIPARIAN COMMUNITIES AND ASSOCIATED EFFECTS ON SALMONTD HABITAT1

ABSTRACT: We surveyed first‐to third‐order streams (channel widths from 1.4 to 10 m) in the southeastern slopes of the Cascade Range of Washington and found two distinct endpoints of riparian vegetation. Where the forest overstory is dominated by park‐like Ponderosa pine (Pinus ponderosa), channels are commonly bordered with a dense scrub‐shrub vegetation community. Where fire suppression and/or lack of active riparian zone management have resulted in dense encroachment of fir forests that create closed forest canopies over the channel, scrub‐shrub vegetation communities are virtually absent near the channel. Other factors being equal, distinct differences in channel morphology exist in streams flowing thru each riparian community. The scrub‐shrub channels have more box‐like cross‐sections, lower width‐to‐depth ratios, more pools, more undercut banks, more common sand‐dominated substrates, and similar amounts of woody debris (despite lower tree density). Temperature comparisons of forest and scrub‐shrub sections of two streams indicate that summer water temperatures are slightly lower in the scrub‐shrub streams. We surmise that these morphology and temperature effects are driven by differences in root density and canopy conditions that alter dynamic channel processes between each riparian community. We suspect that the scrub‐shrub community was more common in the landscape prior to the 20th century and may have been the dominant native riparian community for these stream types. We therefore suggest that managing these streams for dense riparian conifer does not mimic natural conditions, nor does it provide superior in‐stream habitat.     

PRECISION OF CHANNEL WIDTH AND POOL AREA MEASUREMENTS1

ABSTRACT: The precision of width and pool area measurements has rarely been considered in relation to downstream or at section hydraulic geometry, fisheries studies, long-term or along a continuum research studies, or agency monitoring techniques. We assessed this precision and related it to other stream morphologic characteristics. Confidence limits (95 percent) around mean estimates with four transects (cross-sections perpendicular to the channel center-line) ranged from ± 0.4 to 1.8 m on streams with a width of only 2.2 m. To avoid autocorrelation, transects should be spaced about three channel widths apart. To avoid stochastic inhomogeneity, reach length should be about 30 channel widths or ten transects to optimize sampling efficiency. Precision of width measurements decreased with decreased depth and increased with stream size. Both observations reflect variability caused by features such as boulders or coarse woody debris. Pool area precision increased with pool area reflecting increased precision for flat, wide streams with regular pool-rime sequences. The least precision occurred on small, steep streams with random, boulder or coarse woody debris formed pools.     

Assessing Linkages in Stream Habitat,Geomorphic Condition,and Biological Integrity Using a Generalized Regression Neural Network

Watershed managers often use physical geomorphic and habitat assessments in making decisions about the biological integrity of a stream, and to reduce the cost and time for identifying stream stressors and developing mitigation strategies. Such analysis is difficult since the complex linkages between reach‐scale geomorphic and habitat conditions, and biological integrity are not fully understood. We evaluate the effectiveness of a generalized regression neural network (GRNN) to predict biological integrity using physical (i.e., geomorphic and habitat) stream‐reach assessment data. The method is first tested using geomorphic assessments to predict habitat condition for 1,292 stream reaches from the Vermont Agency of Natural Resources. The GRNN methodology outperforms linear regression (69% vs. 40% classified correctly) and improves slightly (70% correct) with additional data on channel evolution. Analysis of a subset of the reaches where physical assessments are used to predict biological integrity shows no significant linear correlation, however the GRNN predicted 48% of the fish health data and 23% of macroinvertebrate health. Although the GRNN is superior to linear regression, these results show linking physical and biological health remains challenging. Reasons for lack of agreement, including spatial and temporal scale differences, are discussed. We show the GRNN to be a data‐driven tool that can assist watershed managers with large quantities of complex, nonlinear data.     

LIMITATIONS OF CONCEPTS USED TO DETERMINE INSTREAM FLOW REQUIREMENTS FOR HABITAT MAINTENANCE1

ABSTRACT: Today most rivers are not freely flowing but are highly regulated to meet both human and wildlife needs. Several models allow the determination of instream flows that are needed to meet wildlife demands. However, these models are based on assumptions that limit their applicability to certain types of rivers. While these limitations do not preclude the use of the models on other types of rivers, like the Platte River in Nebraska, their limitations should be considered and accommodated by those making instream flow planning and management decisions. Other factors affecting channel morphology and its associated wildlife habitat, such as threshold values and vegetation are not adequately considered by current concepts. If rivers are to be managed to provide wildlife habitat, these factors will have to be addressed.     

Understanding Stream Geomorphic State in Relation to Ecological Integrity: Evidence Using Habitat Assessments and Macroinvertebrates

Scientists have long assumed that the physical structure and condition of stream and river channels have pervasive effects on biological communities and processes, but specific tests are few. To investigate the influence of the stream-reach geomorphic state on in-stream habitat and aquatic macroinvertebrate communities, we compared measures of habitat conditions and macroinvertebrate community composition between stable and unstable stream reaches in a paired-study design. We also explored potential associations between these ecological measures and individual geomorphic characteristics and channel adjustment processes (degradation, aggradation, overwidening, and change in planform). We found that habitat quality and heterogeneity were closely tied to stream stability, with geomorphically stable reaches supporting better habitat than unstable reaches. Geomorphic and habitat assessment scores were highly correlated (r = 0.624, P < 0.006, n = 18). Stable reaches did not support significantly greater macroinvertebrate densities than unstable reaches (t = −0.415, P > 0.689, df = 8). However, the percent of the macroinvertebrate community in the Ephemeroptera, Plecoptera, and Trichoptera (EPT) taxa was significantly correlated with the overall habitat assessment scores as well as with individual measures of geomorphic condition and habitat quality. While there is a clear need for more work in classifying and quantifying the responses of aquatic and aquatic-dependent biota to various geomorphic states and processes, this study provides solid preliminary evidence that macroinvertebrate communities are affected by the geomorphic condition of the stream reaches they inhabit and that geomorphic assessment approaches can be used as a tool for evaluating ecological integrity.     

Effects of channel incision on base flow stream habitats and fishes

Channel incision is a widespread phenomenon that results in stream and riparian habitat degradation. Fishes and physical habitat variables were sampled at base flow from three incised stream channels and one reference stream in northwest Mississippi, USA, to quantify incision effects on fish habitat and provide a basis for habitat rehabilitation planning and design. Incised channels were sampled in spring and autumn; the reference channel was sampled only in the autumn. Incised channel habitat quality was inferior to the reference channel despite the presence of structures designed to restore channel stability. Incised channels had physical habitat diversity levels similar to a nonincised reference channel, but contained fewer types of habitat. At base flow, incised channels were dominated by shallow, sandy habitats, moderate to high mean local Froude numbers, and had relatively little organic debris in their beds. In contrast, the reference stream had greater mean water depth, contained more woody debris, and provided more deep pool habitat. Fish assemblages in incised channels were composed of smaller fishes representing fewer species relative to the reference site. Fish species richness was directly proportional to the mean local Froude number, an indicator of the availability of pool habitat.     

PREDICTING INFLUENCES OF URBAN DEVELOPMENT ON THERMAL HABITAT IN A WARM WATER STREAM1

ABSTRACT: Watershed and aquatic ecosystem management requires methods to predict and understand thermal impacts on stream habitat from urbanization. This study evaluates thermal effects of projected urbanization using a modeling framework and considers the biological implications to the fish community. The Stream Network Temperature Model (SNTEMP) was used in combination with the Hydrologic Simulation Program Fortran (HSPF) to assess changes in stream thermal habitat under altered stream‐ flow, shade, and channel width associated with low, medium, and high density urban developments in the Back Creek watershed (Roanoke County, Virginia). Flow alteration by the high density development scenario alone caused minimal heating of mean daily summer base flow (mean +0.1°C). However, when flow changes were modeled concurrently with reduced shade and increased channel width, mean daily temperature increased 1°C. Maximum daily temperatures exceeding the state standard (31°C) increased from 1.1 to 7.6 percent of the time using summer 2000 climatic conditions. Model results suggest that additional urban development will alter stream temperature, potentially limiting thermal habitat and shifting the fish community structure from intolerant to tolerant fish species in Back Creek. More research is needed on the sub‐lethal or chronic effects of increased stream temperature regimes on fish, particularly for those species already living in habitats near their upper limits.     

Towards an ecologically meaningful classification of the flow biotope for river inventory, rehabilitation, design and appraisal purposes

Recent research into the physical and ecological status of rivers has focused upon rapid field-based assessments of mesoscale habitat features in order to satisfy international regulatory requirements for habitat inventory and appraisal. Despite the low cost and time efficient nature of rapid field surveys, the robustness of such techniques remains uncertain. This paper uses data from over 4000 surveyed UK river reaches in the UK River Habitat Survey (RHS) database in order to seek linkages between surface flow conditions (flow biotopes), local channel morphology (physical biotopes) and biologically distinct vegetative and minerogenic habitat units (functional habitats). Attempts to identify one-to-one connections between surface flow types, units of channel morphology and functional habitats oversimplify a complex and dynamic hydraulic environment. Instead, a nested hierarchy of reach-scale physical and ecological habitat structures exists, characterised by transferable assemblages of habitat units. Five flow biotopes show strong correlations with functional habitats, and differing combinations of three of these account for over 60% of the distribution for all functional habitats. On this basis, a classification of environments for ecological purposes is proposed. Principal components analysis and agglomerative hierarchical clustering analysis are employed to objectively validate the proposed classification. Flow biotope assemblages may also represent reach-scale channel morphologies (step-pool, riffle-pool and glide-pool), although functional habitats exhibit differing 'preferences' for rougher or more tranquil environments within these. While the data and analysis are specific to the UK RHS, the methods and findings have wider application in situations, where rapid field appraisal methods and associated databases are deployed in water resource inventory and river rehabilitation design.