Integrated response plot designs for indicators of desertification

The improvement of land management practices on lands susceptible to desertification requires information on the status and condition of the existing resources as well as any change occurring in the resource condition over time. The Environmental Monitoring and Assessment Program (EMAP) of the U.S. Environmental Protection Agency has developed a statistical survey design for monitoring the condition of ecological resources on large spatial scales. EMAP-Rangelands used a uniformity sampling study in 1993 to evaluate response plot designs for three categories of indicators (soils, vegetation, and spectral reflectance) to be used for monitoring ecological condition of a site. The response plot design study was developed to integrate on-site measurements for the three indicator categories. The study was conducted on the Colorado Plateau in southern Utah in three rangeland resource classes (grassland, desertscrub, and conifer woodland) of differing productivity levels in an attempt to develop a common plot design for all three resource classes. Basic measurement units were developed to facilitate integration of data collection. Preliminary spatial analysis of the sampling study found considerable differences in variation patterns among the study sites and measurement categories for the indicator classes used by EMAP-Rangelands. Evidence of substantial trends in the indicator measurements on monitoring sites relative to regional trends leads to the conclusion that nonstationary spatial models for biological processes on a monitoring site may be needed to fulfill the requirements for developing plot designs and indicator criteria.The U.S. Environmental Protection Agency, through the Office of Research and Development, funded the research described here. This paper has been subjected to the Agency's peer and administrative review and has been approved as an EPA publication. The U.S. Government has the right to retain a nonexclusive, royalty-free license in and to any copyright covering this article.     

Designing Environmental Databases for Statistical Analyses

The Environmental Monitoring and Assessment Program (EMAP) collects data that are used to statistically assess the environmental condition of large geographic regions. These data are then posted on the EMAP web site so that anyone can use them. Databases used for the statistical analyses, "analytical" databases, differ in design from the "general-use" databases used by a secondary audience. Their scope is usually restricted in time, in geographic extent, and in type and content of data, often being limited to a single scientific discipline. Their structure may be more horizontal than vertical, so that statistical programs can import the data easily. Their design is strongly influenced by the nature of the scientific analysis because the goal is to create a good computing environment for that analysis. We illustrate these aspects of design with an analytical database for estuaries in the U.S. mid-Atlantic region.     

Great Lakes monitoring results--comparison of probability based and deterministic sampling grids

The Great Lakes may be viewed as a coastal environment, affected by the same meteorological and physical forces as the coastal ocean. The U.S. EPA, Great Lakes National Program Office (GLNPO) has monitored the open waters of the lakes, annually, since 1983. As part of the U.S. EPA Environmental Monitoring and Assessment Program (EMAP), a pilot study was performed in Lake Michigan to compare the existing GLNPO deterministic sampling grid with the EMAP probabilistic grid. Results of chemical analyses of trophic status indicators (total phosphorus and chlorophyll a) as well as nutrients and conventional limnological measurements, from spring and summer surveys in 1992 indicate little difference between the grids in the offshore region of the lake. The few statistically significant differences may be due to station distribution throughout the lake, or simple chance. This might be expected due to the well mixed nature of the open waters of Lake Michigan. The detection of a long-term trend for total phosphorus in Lake Michigan benefits from an annual program: viewing cumulative frequency distributions based on a four year EMAP interval does not convey information on the decrease in phosphorus in the lake. If the EMAP sampling grid were to be used in the Great Lakes, pilots in each of the lakes would be necessary for utilization of the existing long-term record as a basis for trend detection.     

Evaluating Ecological Indicators: Lakes In The Northeastern United States

We use data from a survey of several hundred lakes in the northeastern United States by the U.S. Environmental Protection Agency to illustrate an approach to identifying promising indicators of lake condition. We construct a hypothetical gold standard of water quality from the first principal component of 16 chemical variables measured in the lakes, and examine its associations with 71 candidate indicators based on measurements of human activity, birds, fish and zooplankton in the lakes or their watersheds. Nonparametric summaries of these associations – based on rank correlations and receiver-operating-characteristic curves – suggest that variables summarizing the extent of human disturbance are generally the strongest indicators. To the extent that our water-quality variable is a useful proxy for ecological condition, our results suggest that easily-obtained measures of human activity are at least as predictive as many of the harder-to-measure biological indicators that have been proposed.     

Designing a Spatially Balanced, Randomized Site Selection Process for Regional Stream Surveys: The EMAP Mid-Atlantic Pilot Study

In 1993, the U.S. Environmental Protection Agency (EPA), as part of the Environmental Monitoring and Assessment Program (EMAP), initiated a sample survey of streams in the mid-Atlantic. A major objective of the survey was to quantify ecological condition in wadeable streams across the region. To accomplish this goal, we selected 615 stream sites using a randomized sampling design with some restrictions. The design utilized the digitized stream network taken from 1:100,000-scale USGS topographic maps as the sample frame. Using a GIS, first- through third-order (wadeable) stream segments in the sample frame were randomly laid out in a line and sampled at fixed intervals after a random start. We used a variable probability approach so that roughly equal numbers of first-, second-, and third-order stream sites would appear in the sample. The sample design allows inference from the sample data to the status of the entire 230,400 km of wadeable stream length in the mid-Atlantic study area. Of this mapped stream length, 10% was not in the target population because no stream channel existed (4%), the stream channel was dry (5%), or the stream was not wadeable (1%). We were unable to collect field data from another 10% of the mapped stream length due to lack of access (mostly landowner denials). Thus, the field data we collected at 509 sites allows inference to the ecological condition for 184,600 km of the mapped stream length in the region.     

Environmental Monitoring and Assessment of a Great River Ecosystem: The Upper Missouri River Pilot

Most Great River ecosystems (GREs) are extensively modified and are not receiving adequate protection to prevent further habitat degradation and loss of biotic integrity. In the United States, ecological monitoring and assessment of GREs has lagged behind streams and estuaries, and the management of GREs is hampered by the lack of unbiased data at appropriate spatial scales. Properties of GREs that make them challenging to monitor and assess include difficult sample logistics and high habitat diversity. The U.S. Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP) has developed a comprehensive, regional-scale, survey-based monitoring approach to assessment of streams and estuaries, but has not yet conducted research on applying these tools to GRE monitoring. In this paper we present an overview of an EMAP research project on the Upper Missouri River (UMR). We summarize the assessment objectives for the study, the design for selecting sample locations, the indicators measured at these sites and the tools used to analyze data. We present an example of the type of statements that can be made with EMAP monitoring data. With modification, the set of methodologies developed by EMAP may be well suited for assessment of GREs in general.     

Using Information on Spatial Variability of Small Estuaries in Designing Large-Scale Estuarine Monitoring Programs

In the early 1990s, EPA's Environmental Monitoring and Assessment Program (EMAP) documented the ecological condition of the overall population of small estuaries along the mid-Atlantic coast of the United States. However, the Program did not provide detailed information on the condition of individual estuaries less than 260 km² in surface area, a group of estuaries of concern to environmental managers. To address the needs of environmental managers, when EMAP returned to the region in summer 1997, it included a study of the spatial variability of ecological indicators within individual small estuaries. At 127 probability-based sites in 10 estuaries, EMAP measured a variety of parameters of water quality and sediments, including dissolved oxygen (DO), nutrients, grain size of sediments, contaminants in sediments, and community structures of benthic macroinvertebrates. From this information the ecological condition (e.g., percent area with DO concentrations below 5mg L^–1) for each estuary, along with 90% confidence interval, was determined. The width of the confidence interval was then recalculated for sample sizes ranging from two stations to the total number of stations sampled in that estuary. Confidence interval widths were then plotted against sample size. These plots can be useful in designing future regional monitoring programs with a goal of describing conditions in individual systems as well as broad geographic regions. Results illustrate that beyond five stations per estuary, the reduction in the width of the confidence interval with increasing sampling intensity is relatively small; however, individual program managers need to determine "how small is small enough."     

The Ecological Condition of Gulf of Mexico Resources from Perdido Key to Port St. Joe, Florida, USA: Part I. Coastal Beach Resources

Using the approach established by EPA's Environmental Monitoring and Assessment Program (EMAP), a shoreline monitoring survey was conducted in August and September 1999, encompassing the Florida Panhandle from Perdido Key, Florida to Port St. Joe, Florida. The objective of this survey was to demonstrate the use of a probabilistic survey for monitoring and estimating the condition of swimmable beach areas. Thirty stations were sampled using a probabilistic sampling design. Hydrographic data were collected in addition to samples for water chemistry. Bacterial indicators, enterococci and fecal coliforms, were enumerated from the water according to the EPA Beaches Environmental Assessment Closure and Health (BEACH) Program and Florida state guidelines. Additional criteria for site condition included the presence or absence of primary and secondary dunes, anthropogenic debris and vegetation. Based on EMAP evaluation guidelines and Florida state criteria, a baseline assessment of the condition of the Gulf of Mexico beach resources surveyed is presented.     

Survey design for lakes and reservoirs in the United States to assess contaminants in fish tissue

The National Lake Fish Tissue Study (NLFTS) was the first survey of fish contamination in lakes and reservoirs in the 48 conterminous states based on a probability survey design. This study included the largest set (268) of persistent, bioaccumulative, and toxic (PBT) chemicals ever studied in predator and bottom-dwelling fish species. The U.S. Environmental Protection Agency (USEPA) implemented the study in cooperation with states, tribal nations, and other federal agencies, with field collection occurring at 500 lakes and reservoirs over a four-year period (2000–2003). The sampled lakes and reservoirs were selected using a spatially balanced unequal probability survey design from 270,761 lake objects in USEPA’s River Reach File Version 3 (RF3). The survey design selected 900 lake objects, with a reserve sample of 900, equally distributed across six lake area categories. A total of 1,001 lake objects were evaluated to identify 500 lake objects that met the study’s definition of a lake and could be accessed for sampling. Based on the 1,001 evaluated lakes, it was estimated that a target population of 147,343 (±7% with 95% confidence) lakes and reservoirs met the NLFTS definition of a lake. Of the estimated 147,343 target lakes, 47% were estimated not to be sampleable either due to landowner access denial (35%) or due to physical barriers (12%). It was estimated that a sampled population of 78,664 (±12% with 95% confidence) lakes met the NLFTS lake definition, had either predator or bottom-dwelling fish present, and could be sampled.     

A process for selecting indicators for monitoring conditions of rangeland health

This paper reports on a process for selecting a suite of indicators that, in combination, can be useful in assessing the ecological conditions of rangelands. Conceptual models that depict the structural and functional properties of ecological processes were used to show the linkages between ecological components and their importance in assessing the status and trends of ecological resources on a regional scale. Selection criteria were developed so that relationships could be assessed at different spatial scales using ground and aerial measurements. Parameters including responsiveness and sensitivity to change, quality assurance and control, temporal and spatial variability, cost-effectiveness and statistical design played an important role in determining how indicators were selected. A total of ten indicator categories were selected by a committee of scientists for evaluation in the program. A subset that included soil properties, vegetation composition and abundance, and spectral properties was selected for evaluation in a pilot test conducted in 1992 in the Colorado Plateau region of the southwestern United States. This work is part of a major effort being undertaken by the U.S. Environmental Protection Agency and its collaborators to assess the condition of rangelands (primarily comprised of arid, semi-arid and dry subhumid ecosystems) along with seven other ecosystem groups (forests, agricultural lands, wetlands, surface waters, landscapes, estuaries and Great Lakes) as part of a national Environmental Monitoring and Assessment Program (EMAP). The indicator selection process reported upon was developed to support EMAP's goal of providing long-term, policy-relevant research focusing on evaluating the ecological condition (or health) of regional and national resources.     

Estimating Trophic State Proportions of a Regional Lake Population: Are Larger Samples Always Better?

During the summers of 1991–1994, the Environmental Monitoringand Assessment Program (EMAP) sampled 344 lakes throughout thenortheastern United States using a proportional stratified sampling design based on lake size. Approximately one-quarter ofthe 344 lakes were sampled each year (4 years) for totalphosphorus to determine the proportion (and associated95% confidence intervals) of the northeast lake population 1ha (11,076 ± 1,699 lakes) that was in oligotrophic,mesotrophic, eutrophic, or heupereutropic (4 classes) conditionaccording to the total phosphorus criteria of the North AmericaLake Manegement Society. Estimates for the second, third, andfourth yr were developed as cumulative of the previous yrsamples and the current yr samples for the northeast as a wholeand for each of its three ecoregions (4 regions). New confidence intervals were computed for each cumulative yrcondition estimate. This produced a total (4 years × 4classes × 4 regions) of 64 cumulative yr tropic conditionestimates. Confidence intervals for 21% of these estimates didnot shorten with increased sample size. This phenomena raisedquestions about the accuracy of estimates based on cumulativesampling procedures. We explain why and how the phenomenon comesabout with both straight random and proportional randomsampling. Further, we present an example of the effects thisphenomenon has on lake tropic state condition estimates in thenortheastern United States.     

Using Science to Assess Environmental Vulnerabilities

Beginning in 1995, the U.S. Environmental Protection Agency (U.S. EPA), Office of Research and Development has focused much of its ecological research in the Mid-Atlantic as part of the Mid-Atlantic Integrated Assessment (MAIA). The goal of MAIA is to improve the assessability of scientific information in environmental decision-making. Following the Environmental Monitoring and Assessment Program (EMAP) whose goal is to guide monitoring that effectively reflects current ecosystem condition and trends, MAIA's second, current, phase of research under the Regional Vulnerability Assessment (ReVA) program is designed to target risk management activities using available data and models. The papers presented here are from a conference held in May 2003 that presented results of research in this second phase of MAIA. The conference was organized into the following topics: 1. Assessing Current Impacts and Vulnerabilities 2. Forecasting Environmental Condition and Vulnerabilities 3. Developing Management Strategies to Optimize the Future, and 4. Assessing and Responding to Environmental Vulnerability.     

Towards a protocol for stream macroinvertebrate sampling in China

Standard protocols are critical for maximizing data comparability and aggregation in national monitoring programs, and taxa richness is a common indicator of site condition and biological diversity. There are two general approaches for sampling stream macroinvertebrate assemblages: targeted richest habitat and site wide. At seven sites, we compared three methods: Ontario Benthic Biomonitoring Network (OBBN), Environmental Monitoring and Assessment Program (EMAP), and Rapid Bioassessment Protocol (RBP). The OBBN method produced a biased sample at a site with a single small riffle, the RBP method produced the most total taxa, and the EMAP method produced the most taxa at four sites and the most individuals at six sites. The RBP method produced asymptotes for percent tolerant individuals, percent chironomid individuals, and Hilsenhoff Biotic Index score after five to ten stations. The EMAP method produced asymptotes for those metrics after 10 to 20 stations per site. The EMAP method typically required half the number of stations as the RBP method to obtain 70–90% of true taxa richness as estimated by the Jaccard coefficient. We conclude that the EMAP method is preferable because of its greater precision in taxa richness estimates.     

A Knowledge-Based Approach to the Assessment of Watershed Condition

The Ecosystem Management Decision Support (EMDS) system is an application framework for knowledge-based decision support of ecological assessments. EMDS integrates geographic information system and knowledge base system technologies to provide an analytical tool for environmental assessment and monitoring. The basic objective of EMDS is to improve the quality and completeness of environmental assessments and the efficiency with which they are performed. The USDA Forest Service and the U.S. Environmental Protection Agency have cooperatively developed an EMDS knowledge base for watershed condition assessment. Specifically, this knowledge base evaluates watershed processes, patterns, general effects of human activity, and fisheries habitat suitability. Such assessments are based on spatially explicit input data concerning current conditions and reference conditions which are subsequently interpreted by user-defined "fuzzy" membership functions. In this paper we describe basic components of our knowledge base for assessing watershed condition and illustrate its application within northern Idaho and northwestern Montana.     

Environmental Monitoring and Research Initiative: a Priority Activity for the Committee on Environmental and Natural Resources

The Committee on Environment and Natural Resources (CENR) has recognized a high priority need to integrate and coordinate federal agencies' efforts in order to enable a comprehensive evaluation of our nation's environmental resources and ecological systems. The federal government spends about $640 million per year collecting data about our forests, agricultural and rangelands, lakes, rivers, estuaries, and coastal marine systems. These efforts have significantly aided the progress in preserving and protecting the environment in recent decades but are not sufficiently coordinated to provide us a truly comprehensive status report or full understanding of the causes and effects of environmental change. This paper describes the Committee on Environment and Natural Resources and its functions, provides a status report on the Environmental Monitoring and Research Initiative, and offers some perspectives on the factors that will make the initiative and its contributing programs a success. In particular, the paper discusses the potential relationship with the Environmental Monitoring and Assessment Program (EMAP).     

Development and Applications of Microbial Ecogenomic Indicators for Monitoring Water Quality: Report of a Workshop Assessing the State of the Science, Research Needs and Future Directions

This article brings forth recommendations from a workshop sponsored by the U.S. Environmental Protection Agency's Science to Achieve Results (STAR) and Environmental Monitoring and Assessment (EMAP) Programs and by the Council of State Governments, held during May 2002 in Kansas City, Kansas. The workshop assembled microbial ecologists and environmental scientists to determine what research and science is needed to bring existing molecular biological approaches and newer technologies arising from microbial genomic research into environmental monitoring and water quality assessments. Development of genomics and proteomics technologies for environmental science is a very new area having potential to improve environmental water quality assessments. The workshop participants noted that microbial ecologists are already using molecular biological methods well suited for monitoring and water quality assessments and anticipate that genomics-enabled technologies could be made available for monitoring within a decade. Recommendations arising from the workshop include needs for (i) identification of informative microbial gene sequences, (ii) improved understandings of linkages between indicator taxa, gene expression and environmental condition, (iii) technological advancements towards field application, and (iv) development of the appropriate databases. Contribution no. 1217 from the NHEERL Gulf Ecology Division. All authors contributed equally to this publication.     

Correlation of Black Smoke and Nitrogen Oxides Emissions Through Field Testing of in-Use Diesel Vehicles

The U.S. Environmental Protection Agency Environmental Monitoring and Assessment Program (EMAP) uses water clarity as a water quality indicator for integrated assessments of coastal waters. After the publication of the first National Coastal Condition Report (USEPA, 2001c), the national water clarity reference value of 10% of ambient surface light at 1~m depth was reevaluated and modified to reflect expected differences in regional reference light conditions. These regional differences range from naturally turbid estuaries like those found in Mississippi and Louisiana to clear water estuaries expected to support extensive beds of submerged aquatic vegetation in, e.g., Florida and Tampa Bays. For the second National Coastal Condition Report, water clarity was assessed based on regional reference values (USEPA, 2004). Different regional water clarity reference values and data collection methods necessitated the development of a water clarity index based on light attenuation coefficients (k). This index incorporates regional reference conditions and is interchangeable with secchi depth and percent light transmission calculated from light meter measurements. Evaluation of the water clarity index shows that k values based on transmissivity at 1~m can be estimated from secchi depth measurements and successfully used as a surrogate for transmissivity calculated from light meter data. An approach for assessing water clarity in Gulf of Mexico estuaries using light meter data and secchi depth is presented.     

Evaluation of R-EMAP Techniques for the Measurement of Ecological Integrity of Streams in Washington State's Coast Range Ecoregion

We used methods from EPA's Environmental Monitoring and Assessment Program (EMAP) to assess the regional status of streams within the Coast Range ecoregion of Washington State. Study objectives were: to determine the ecological condition of wadable, 1st-order through 3rd-order streams; to provide information for the development of water quality biological criteria; and to determine the applicability of EMAP-derived methods in Washington. Stream condition was assessed using EMAP indicators for habitat (chemical and physical) and biology (invertebrate and vertebrate assemblages). EMAP's probability survey was used to select 75 1st through 3rd-order stream sites from the USGS 1:100,000 series hydrographic layer. Of these, 45 sites were sampled. Multivariate techniques were used to identify community types and related physical and chemical habitat. Overall, about 25% of the sites were rated least-impacted. Most impacts were associated with non-point source pollution, mainly forestry practices. The R-EMAP method was a successful tool for assessment of regional status and ecological integrity; however, in order to use it for biological criteria development in Washington State, the method would require some modification to complement the current state protocols.