Evaluation of R-EMAP Techniques for the Measurement of Ecological Integrity of Streams in Washington State's Coast Range Ecoregion

We used methods from EPA's Environmental Monitoring and Assessment Program (EMAP) to assess the regional status of streams within the Coast Range ecoregion of Washington State. Study objectives were: to determine the ecological condition of wadable, 1st-order through 3rd-order streams; to provide information for the development of water quality biological criteria; and to determine the applicability of EMAP-derived methods in Washington. Stream condition was assessed using EMAP indicators for habitat (chemical and physical) and biology (invertebrate and vertebrate assemblages). EMAP's probability survey was used to select 75 1st through 3rd-order stream sites from the USGS 1:100,000 series hydrographic layer. Of these, 45 sites were sampled. Multivariate techniques were used to identify community types and related physical and chemical habitat. Overall, about 25% of the sites were rated least-impacted. Most impacts were associated with non-point source pollution, mainly forestry practices. The R-EMAP method was a successful tool for assessment of regional status and ecological integrity; however, in order to use it for biological criteria development in Washington State, the method would require some modification to complement the current state protocols.     

The role of sample surveys for monitoring the condition of the nation's lakes

In order to meet a growing need to determine the condition of the nation's ecosystems and how their condition is changing, the U.S. Environmental Protection Agency (EPA) developed EMAP, the Environmental Monitoring and Assessment Program. A common survey design serves as the foundation on which to base monitoring of status and trends among diverse ecosystem types. In this paper, we describe the need for a statistically based survey design, briefly summarize the basic EMAP design, describe how that design is tailored for the selection of a probability sample of lakes on which to make measurements of lake condition, and illustrate the process for selecting a sample of lakes in the northeastern United States. Finally, we illustrate how measurements taken on the sample of lakes can be summarized, with known uncertainty, to describe the condition of a population of lakes.The U.S. Government right to retain a non-exclusive, royalty free licence in and to any copyright is acknowledged.     

Integrated response plot designs for indicators of desertification

The improvement of land management practices on lands susceptible to desertification requires information on the status and condition of the existing resources as well as any change occurring in the resource condition over time. The Environmental Monitoring and Assessment Program (EMAP) of the U.S. Environmental Protection Agency has developed a statistical survey design for monitoring the condition of ecological resources on large spatial scales. EMAP-Rangelands used a uniformity sampling study in 1993 to evaluate response plot designs for three categories of indicators (soils, vegetation, and spectral reflectance) to be used for monitoring ecological condition of a site. The response plot design study was developed to integrate on-site measurements for the three indicator categories. The study was conducted on the Colorado Plateau in southern Utah in three rangeland resource classes (grassland, desertscrub, and conifer woodland) of differing productivity levels in an attempt to develop a common plot design for all three resource classes. Basic measurement units were developed to facilitate integration of data collection. Preliminary spatial analysis of the sampling study found considerable differences in variation patterns among the study sites and measurement categories for the indicator classes used by EMAP-Rangelands. Evidence of substantial trends in the indicator measurements on monitoring sites relative to regional trends leads to the conclusion that nonstationary spatial models for biological processes on a monitoring site may be needed to fulfill the requirements for developing plot designs and indicator criteria.The U.S. Environmental Protection Agency, through the Office of Research and Development, funded the research described here. This paper has been subjected to the Agency's peer and administrative review and has been approved as an EPA publication. The U.S. Government has the right to retain a nonexclusive, royalty-free license in and to any copyright covering this article.     

Using Information on Spatial Variability of Small Estuaries in Designing Large-Scale Estuarine Monitoring Programs

In the early 1990s, EPA's Environmental Monitoring and Assessment Program (EMAP) documented the ecological condition of the overall population of small estuaries along the mid-Atlantic coast of the United States. However, the Program did not provide detailed information on the condition of individual estuaries less than 260 km² in surface area, a group of estuaries of concern to environmental managers. To address the needs of environmental managers, when EMAP returned to the region in summer 1997, it included a study of the spatial variability of ecological indicators within individual small estuaries. At 127 probability-based sites in 10 estuaries, EMAP measured a variety of parameters of water quality and sediments, including dissolved oxygen (DO), nutrients, grain size of sediments, contaminants in sediments, and community structures of benthic macroinvertebrates. From this information the ecological condition (e.g., percent area with DO concentrations below 5mg L^–1) for each estuary, along with 90% confidence interval, was determined. The width of the confidence interval was then recalculated for sample sizes ranging from two stations to the total number of stations sampled in that estuary. Confidence interval widths were then plotted against sample size. These plots can be useful in designing future regional monitoring programs with a goal of describing conditions in individual systems as well as broad geographic regions. Results illustrate that beyond five stations per estuary, the reduction in the width of the confidence interval with increasing sampling intensity is relatively small; however, individual program managers need to determine "how small is small enough."     

Using Science to Assess Environmental Vulnerabilities

Beginning in 1995, the U.S. Environmental Protection Agency (U.S. EPA), Office of Research and Development has focused much of its ecological research in the Mid-Atlantic as part of the Mid-Atlantic Integrated Assessment (MAIA). The goal of MAIA is to improve the assessability of scientific information in environmental decision-making. Following the Environmental Monitoring and Assessment Program (EMAP) whose goal is to guide monitoring that effectively reflects current ecosystem condition and trends, MAIA's second, current, phase of research under the Regional Vulnerability Assessment (ReVA) program is designed to target risk management activities using available data and models. The papers presented here are from a conference held in May 2003 that presented results of research in this second phase of MAIA. The conference was organized into the following topics: 1. Assessing Current Impacts and Vulnerabilities 2. Forecasting Environmental Condition and Vulnerabilities 3. Developing Management Strategies to Optimize the Future, and 4. Assessing and Responding to Environmental Vulnerability.     

Great Lakes monitoring results--comparison of probability based and deterministic sampling grids

The Great Lakes may be viewed as a coastal environment, affected by the same meteorological and physical forces as the coastal ocean. The U.S. EPA, Great Lakes National Program Office (GLNPO) has monitored the open waters of the lakes, annually, since 1983. As part of the U.S. EPA Environmental Monitoring and Assessment Program (EMAP), a pilot study was performed in Lake Michigan to compare the existing GLNPO deterministic sampling grid with the EMAP probabilistic grid. Results of chemical analyses of trophic status indicators (total phosphorus and chlorophyll a) as well as nutrients and conventional limnological measurements, from spring and summer surveys in 1992 indicate little difference between the grids in the offshore region of the lake. The few statistically significant differences may be due to station distribution throughout the lake, or simple chance. This might be expected due to the well mixed nature of the open waters of Lake Michigan. The detection of a long-term trend for total phosphorus in Lake Michigan benefits from an annual program: viewing cumulative frequency distributions based on a four year EMAP interval does not convey information on the decrease in phosphorus in the lake. If the EMAP sampling grid were to be used in the Great Lakes, pilots in each of the lakes would be necessary for utilization of the existing long-term record as a basis for trend detection.     

Environmental Monitoring and Assessment of a Great River Ecosystem: The Upper Missouri River Pilot

Most Great River ecosystems (GREs) are extensively modified and are not receiving adequate protection to prevent further habitat degradation and loss of biotic integrity. In the United States, ecological monitoring and assessment of GREs has lagged behind streams and estuaries, and the management of GREs is hampered by the lack of unbiased data at appropriate spatial scales. Properties of GREs that make them challenging to monitor and assess include difficult sample logistics and high habitat diversity. The U.S. Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP) has developed a comprehensive, regional-scale, survey-based monitoring approach to assessment of streams and estuaries, but has not yet conducted research on applying these tools to GRE monitoring. In this paper we present an overview of an EMAP research project on the Upper Missouri River (UMR). We summarize the assessment objectives for the study, the design for selecting sample locations, the indicators measured at these sites and the tools used to analyze data. We present an example of the type of statements that can be made with EMAP monitoring data. With modification, the set of methodologies developed by EMAP may be well suited for assessment of GREs in general.     

Assessing Landscape Condition Relative to Water Resources in the Western United States: A Strategic Approach

The Environmental Monitoring and Assessment Program (EMAP) is proposing an ambitious agenda to assess the status of streams and estuaries in a 12-State area of the western United States by the end of 2003. Additionally, EMAP is proposing to access landscape conditions as they relate to stream and estuary conditions across the west. The goal of this landscape project is to develop a landscape model that can be used to identify the relative risks of streams and estuaries to potential declines due to watershed-scale, landscape conditions across the west. To do so, requires an understanding of quantitative relationships between landscape composition and pattern metrics and parameters of stream and estuary conditions. This paper describes a strategic approach for evaluating the degree to which landscape composition and pattern influence stream and estuary condition, and the development and implementation of a spatially-distributed, landscape analysis approach.     

How Probability Survey Data Can Help Integrate 305(b) and 303(d)Monitoring and Assessment of State Waters

Section 305(b) of the United States’ Clean Water Act (CWA) requires states to assess the overall quality of waters in the states, while Section 303(d) requires states to develop a list of the specific waters in their state not attaining water quality standards (a.k.at impaired waters). An integrated, efficient and cost-effective process is needed to acquire and assess the data needed to meet both these mandates. A subset of presentations at the 2002 Environmental Monitoring and Assessment Program (EMAP) Symposium provided information on how probability data, tools and methods could be used by states and other entities to aid in development of their overall assessment of condition and list of impaired waters. Discussion identified some of the technical and institutional problems that hinder the use of EMAP methods and data in the analysis to identify impaired waters as well as development needs to overcome these problems.     

Towards a protocol for stream macroinvertebrate sampling in China

Standard protocols are critical for maximizing data comparability and aggregation in national monitoring programs, and taxa richness is a common indicator of site condition and biological diversity. There are two general approaches for sampling stream macroinvertebrate assemblages: targeted richest habitat and site wide. At seven sites, we compared three methods: Ontario Benthic Biomonitoring Network (OBBN), Environmental Monitoring and Assessment Program (EMAP), and Rapid Bioassessment Protocol (RBP). The OBBN method produced a biased sample at a site with a single small riffle, the RBP method produced the most total taxa, and the EMAP method produced the most taxa at four sites and the most individuals at six sites. The RBP method produced asymptotes for percent tolerant individuals, percent chironomid individuals, and Hilsenhoff Biotic Index score after five to ten stations. The EMAP method produced asymptotes for those metrics after 10 to 20 stations per site. The EMAP method typically required half the number of stations as the RBP method to obtain 70–90% of true taxa richness as estimated by the Jaccard coefficient. We conclude that the EMAP method is preferable because of its greater precision in taxa richness estimates.     

State of the Estuaries in the Mid-Atlantic Region of the United States

The U.S. EPA has prepared a State of the Region Report for Mid-Atlantic Estuaries to increase knowledge of environmental condition for improved environmental management. Sources of information included the National Estuary Programs, the Chesapeake Bay Program, the state monitoring programs in Delaware, Maryland, and Virginia, Federal programs such as National Status & Trends, National Shellfish Register, National Wetlands Inventory, the Environmental Monitoring and Assessment Program, and other primary literature sources. The state of the estuarine environment was summarized using indicators for water and sediment quality, habitat change, condition of living resources, and aesthetic quality. Each indicator was briefly discussed relative to its importance in understanding estuarine condition. Wherever possible, data from multiple programs were used to depict condition. Finally, an overall evaluation of estuarine condition in the region was determined. The usefulness of monitoring programs that collect consistent information with a well-defined sampling design cannot be overemphasized.     

Correlation of Black Smoke and Nitrogen Oxides Emissions Through Field Testing of in-Use Diesel Vehicles

The U.S. Environmental Protection Agency Environmental Monitoring and Assessment Program (EMAP) uses water clarity as a water quality indicator for integrated assessments of coastal waters. After the publication of the first National Coastal Condition Report (USEPA, 2001c), the national water clarity reference value of 10% of ambient surface light at 1~m depth was reevaluated and modified to reflect expected differences in regional reference light conditions. These regional differences range from naturally turbid estuaries like those found in Mississippi and Louisiana to clear water estuaries expected to support extensive beds of submerged aquatic vegetation in, e.g., Florida and Tampa Bays. For the second National Coastal Condition Report, water clarity was assessed based on regional reference values (USEPA, 2004). Different regional water clarity reference values and data collection methods necessitated the development of a water clarity index based on light attenuation coefficients (k). This index incorporates regional reference conditions and is interchangeable with secchi depth and percent light transmission calculated from light meter measurements. Evaluation of the water clarity index shows that k values based on transmissivity at 1~m can be estimated from secchi depth measurements and successfully used as a surrogate for transmissivity calculated from light meter data. An approach for assessing water clarity in Gulf of Mexico estuaries using light meter data and secchi depth is presented.     

Incidence of stress in benthic communities along the U.S. Atlantic and Gulf of Mexico coasts within different ranges of sediment contamination from chemical mixtures

Synoptic data on concentrations of sediment-associated chemical contaminants and benthic macroinfaunal community structure were collected from 1,389 stations in estuaries along the U.S. Atlantic and Gulf of Mexico coasts as part of the nationwide Environmental Monitoring and Assessment Program (EMAP). These data were used to develop an empirical framework for evaluating risks of benthic community-level effects within different ranges of sediment contamination from mixtures of multiple chemicals present at varying concentrations. Sediment contamination was expressed as the mean ratio of individual chemical concentrations relative to corresponding sediment quality guidelines (SQGs), including Effects Range-Median (ERM) and Probable Effects Level (PEL) values. Benthic condition was assessed using diagnostic, multi-metric indices developed for each of three EMAP provinces (Virginian, Carolinian, and Louisianian). Cumulative percentages of stations with a degraded benthic community were plotted against ascending values of the mean ERM and PEL quotients. Based on the observed relationships, mean SQG quotients were divided into four ranges corresponding to either a low, moderate, high, or very high incidence of degraded benthic condition. Results showed that condition of the ambient benthic community provides a reliable and sensitive indicator for evaluating the biological significance of sediment-associated stressors. Mean SQG quotients marking the beginning of the contaminant range associated with the highest incidence of benthic impacts (73–100% of samples, depending on the province and type of SQG) were well below those linked to high risks of sediment toxicity as determined by short-term toxicity tests with single species. Measures of the ambient benthic community reflect the sensitivities of multiple species and life stages to persistent exposures under actual field conditions. Similar results were obtained with preliminary data from the west coast (Puget Sound).     

Designing a Spatially Balanced, Randomized Site Selection Process for Regional Stream Surveys: The EMAP Mid-Atlantic Pilot Study

In 1993, the U.S. Environmental Protection Agency (EPA), as part of the Environmental Monitoring and Assessment Program (EMAP), initiated a sample survey of streams in the mid-Atlantic. A major objective of the survey was to quantify ecological condition in wadeable streams across the region. To accomplish this goal, we selected 615 stream sites using a randomized sampling design with some restrictions. The design utilized the digitized stream network taken from 1:100,000-scale USGS topographic maps as the sample frame. Using a GIS, first- through third-order (wadeable) stream segments in the sample frame were randomly laid out in a line and sampled at fixed intervals after a random start. We used a variable probability approach so that roughly equal numbers of first-, second-, and third-order stream sites would appear in the sample. The sample design allows inference from the sample data to the status of the entire 230,400 km of wadeable stream length in the mid-Atlantic study area. Of this mapped stream length, 10% was not in the target population because no stream channel existed (4%), the stream channel was dry (5%), or the stream was not wadeable (1%). We were unable to collect field data from another 10% of the mapped stream length due to lack of access (mostly landowner denials). Thus, the field data we collected at 509 sites allows inference to the ecological condition for 184,600 km of the mapped stream length in the region.     

Development and Applications of Microbial Ecogenomic Indicators for Monitoring Water Quality: Report of a Workshop Assessing the State of the Science, Research Needs and Future Directions

This article brings forth recommendations from a workshop sponsored by the U.S. Environmental Protection Agency's Science to Achieve Results (STAR) and Environmental Monitoring and Assessment (EMAP) Programs and by the Council of State Governments, held during May 2002 in Kansas City, Kansas. The workshop assembled microbial ecologists and environmental scientists to determine what research and science is needed to bring existing molecular biological approaches and newer technologies arising from microbial genomic research into environmental monitoring and water quality assessments. Development of genomics and proteomics technologies for environmental science is a very new area having potential to improve environmental water quality assessments. The workshop participants noted that microbial ecologists are already using molecular biological methods well suited for monitoring and water quality assessments and anticipate that genomics-enabled technologies could be made available for monitoring within a decade. Recommendations arising from the workshop include needs for (i) identification of informative microbial gene sequences, (ii) improved understandings of linkages between indicator taxa, gene expression and environmental condition, (iii) technological advancements towards field application, and (iv) development of the appropriate databases. Contribution no. 1217 from the NHEERL Gulf Ecology Division. All authors contributed equally to this publication.     

Environmental Monotoring and Assessment Program: Current Status of Virginian Province (U.S.) Estuaries

Monitoring of indicators of the ecological condition of bays, tidal rivers, and estuaries within the Virginian Biogeographic Province (Cape Cod, Massachusetts to Cape Henry, Virginia) was conducted annually by the U.S. EPA's Environmental Monitoring and Assessment Program (EMAP) during the summer months of 1990 to 1993. Data were collected at 425 probability-based stations within the Province. Indicators monitored included water quality (temperature, salinity, water clarity, and dissolved oxygen concentration), sediment contamination, sediment toxicity, benthic community structure, fish community structure, and fish gross external pathology. Data were used to estimate the current status of the ecological condition of Virginian Province estuarine resources, and provide a baseline for identifying possible future changes. Estimates, with 95% confidence limits, of the areal extent of impacted resources within the Province are provided. Data are also presented by estuarine class (large estuaries, small estuarine systems, and large tidal rivers). Results show that, overall, approximately half of the estuarine waters of the Virginian Province can be classified as impacted based on multiple indicators, with hypoxia being the major stressor.     

Designing Environmental Databases for Statistical Analyses

The Environmental Monitoring and Assessment Program (EMAP) collects data that are used to statistically assess the environmental condition of large geographic regions. These data are then posted on the EMAP web site so that anyone can use them. Databases used for the statistical analyses, "analytical" databases, differ in design from the "general-use" databases used by a secondary audience. Their scope is usually restricted in time, in geographic extent, and in type and content of data, often being limited to a single scientific discipline. Their structure may be more horizontal than vertical, so that statistical programs can import the data easily. Their design is strongly influenced by the nature of the scientific analysis because the goal is to create a good computing environment for that analysis. We illustrate these aspects of design with an analytical database for estuaries in the U.S. mid-Atlantic region.     

Texas National Coastal Assessment (2000–2004): challenges, solutions, lessons learned and future directions

The Texas National Coastal Assessment (NCA) program began with the immediate challenge of integrating the NCA effort with Texas Parks and Wildlife Department’s (TPWD) Coastal Fisheries Division and its existing probabilistic Fishery Independent Monitoring Program. Close coordination and detailed planning along with a novel two boat sampling operation helped to make this alliance work. Partnerships with National Estuary Programs and the Texas Commission on Environmental Quality (TCEQ) greatly improved coverage of the Texas coast over the initial fifty station design. Airboats, biobags, and polyvinyl chloride (PVC) corers were instrumental in overcoming numerous technical challenges. NCA data provide a more complete assessment of water and sediment quality than the traditional 305(b) report, with better spatial coverage and a measure of validity. There were differing patterns of PCBs, PAHs, DDTs and chlorinated pesticides, and metals such as mercury (Hg), arsenic (As), lead (Pb) and zinc (Zn) along the Texas coast. A confederation of Texas state agencies is considering ways to take advantage of probabilistic sampling designs to monitor the Texas coast. The TCEQ and TPWD are working on a joint project to redesign sediment and water quality monitoring that may serve as a springboard to a continuous monitoring program and opportunities for further improvement of ecosystem health assessment of the Texas coast.     

The ecological condition of Gulf of Mexico resources from Perdido Key to Port St. Joe, Florida: Part II near-shelf coastal resources

In 1999, the United States Environmental Protection Agency Gulf Ecology Division initiated a pilot study to assess the condition of nearshore coastal resources. Near-shelf areas associated with coastal beaches are susceptible to land based activities, but are not consistently monitored. Additionally, few or no marine water quality criteria exist for evaluating these waters. The goal of this pilot study was to assess the ecological condition of Gulf of Mexico near-shelf resources using a probability-based survey design. Data are used to generate a baseline assessment of condition in coastal nearshore areas and provide a comparative tool for evaluating future trends in condition. Water quality, sediment quality and benthic diversity data can provide a baseline assessment for managers to evaluate the potential for future problems such as nutrient over-enrichment, sediment contamination and degraded biological condition. We present results from a probability-based survey demonstration assessing near-shelf resources along the Florida panhandle.     

An Assessment of the Ecological Condition of Long Island Sound, 1990–1993

Data from the Environmental Protection Agency's (EPA) Environmental Monitoring and Assessment Program (EMAP) from 1990 to 1993 were used to assess the condition of the Long Island Sound (LIS) estuary. Ambient water, sediment and biota were collected during the summer months from 53 LIS stations using an unbiased sampling design. The design consists of two LIS subunits, LIS proper, and small estuaries (<2.6 km2) at the margins of the Sound. Selected indicators of condition included: benthic species composition, abundance and biomass; fish species composition and gross external pathology; sediment physical and chemical characterization and sediment toxicity; and water clarity and quality. Results of the four-year sampling indicated that 28(±11)% of the areal extent of LIS proper had a benthic index < zero (impacted) and 51(±12)% of the area of small estuaries was impacted. Analysis of the results of other indicators also shows that small estuaries were particularly affected. For example, 42(±10)% of the areal extent of small estuaries exhibited sediment toxicity, and significant chemical contamination was evident in 22% of the area of small estuaries. Low dissolved oxygen (D.O.) concentrations (<5 ppm), however, appeared to affect only the deeper open waters of western LIS. Approximately 48(±12)% of the areal extent of LIS proper documented exposure to at least moderate D.O. stress (<5 ppm). The overall results of this monitoring study indicate that significant anthropogenic impacts have occurred in LIS and that if remediation was to take place, specific localized sediment problems would need attention. Point source and non-point source nutrient inputs to the Sound, which are believed to be the primary causative factor for the observed hypoxic conditions, would also need attention.