Soil bacterial community characteristics of rice-rice-rape crop rotation北大核心CSCD

To investigate the characteristic changes in soil bacterial community under rice-rice-rape rotation in southern China, soil samples from a 30-year crop rotation and continuous cropping system were collected. Clone library and gene sequence analysis were adopted. The PCR amplification was carried out using universal primers of the 16S rDNA gene. The amplified fragments were then used to construct a clone library. The subclones were sequenced and analyzed. The experimental analysis showed that, in July 2015, and October and April 2016, the Shannon Wiener index and richness index of bacteria from the rotation treatment soils were higher than those of the continuous cropping treatment soil. The soil bacterial diversity of the rotation treatment was higher than that of the continuous cropping treatment. The results of BLAST analysis in the GenBank showed that Proteobacteria accounted 55% of total bacteria in the rotation treatment soil, whereas it accounted for 45% of total bacteria in continuous cropping treatment soil. Gemmatimonadetes accounted for 13% of the total bacteria in rotation treatment and 10% in the continuous cropping treatment. The proportion of Acidobacteria, Firmicutes, and Planctomycetes in rotation soil was less than those in the continuous cropping soil. Proteobacteria and Gemmatimonadetes were the dominant flora in soil. The changes in the predominant bacteria affected the diversity of soil bacteria in rotation and continuous cropping. The sequence analysis showed that the dominant bacteria in the soil were Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria, which higher than those in the rice-rice continuous cropping treatment. The sequences similar to Chloroflexi were observed in the rice-rice-rape rotation soils, but not in the continuous cropping soils. The results showed that the soil microbial population is conducted by agricultural tillage, and rice-rice-rape rotation increased the soil bacterial abundance compared with that of the rice-rice continuous treatment. © 2018 Science Press. All rights reserved.     

Are trade-offs in plant resprouting manifested in community seed banks?

Trade-offs in allocation to resprouting vs. seedling regeneration in plants are predicted to occur along fire disturbance gradients. Increased resprouting ability should be generally favored in plant communities with a high probability of crown fire return. Hence, communities dominated by resprouters are predicted to have smaller seed banks than those dominated by species killed by fire. We tested whether there were trait shifts in resprouting ability among growth forms (short-lived herbaceous vs. ground-dwelling perennials vs. shrubs) and among communities (rocky outcrop vs. sclerophyll forest) with contrasting probabilities of crown fire return. Resprouting was more common in ground-dwelling perennials and in the sclerophyll forest community with a high probability of crown fire. Soil seed banks were sampled in rocky outcrop and sclerophyll forest communities in recently burned (18 months) and long-since-burned (12 years) locations at interspersed replicated sites. Collected seed banks were treated with orthogonal treatments of fire stimuli or no stimuli, and seedling emergence was measured in controlled conditions. Seed bank composition reflected the pattern of extant vegetation, with resprouting species being more common in the community with a higher probability of crown fire. Overall, however, resprouting species were poorly represented in the seed bank compared to those species killed by fire. Predicted shifts in allocation to seed production were strongly manifested in community seed banks across the disturbance gradient. Fewer species, seedlings, and seedlings per adult emerged from seed banks in the sclerophyll forest. This suggests that the dominance of resprouting species influences recruitment at the community scale. Community patterns in the seed bank also reflected predicted trade-offs with plant size and growth rate. Short-lived species that are killed by fire dominated the seed bank on rocky outcrops, while longer-lived resprouting species were found in low abundance. Life history trade-offs in persistence and regeneration strongly contribute to coexistence patterns between and within communities with contrasting probabilities of fire return.     

Population structure and community characteristics of Acer catalpifolium Rehd北大核心CSCD

Acer catalpifolium Rehd., a critically endangered tree species with an extremely limited range of distribution, is one of the 120 plant species with extremely small populations, as approved by the state forestry administration of the People's Republic of China and requires urgent rescue action. In order to comprehensively understand the population status and the future developmental trend of A. catalpifolium, the plant communities were investigated from 5 sites, including Caishenmiao (CSM), Banruosi (BRS), Zhangshancun (ZSC), Fuhusi (FHS), and Baoguosi (BGS). The population structure of A. catalpifolium as well as the species composition and community characteristics of its habitat were investigated. The results showed that A. catalpifolium is mainly distributed in the evergreen broad-leaved and deciduous broad-leaved mixed forests, in different community layers, namely, the tree layer, shrub layer, and herb layer, and is accompanied by 52, 74, and 52 plant species, respectively. Analyses of the distribution of population abundance revealed that BRS had the largest distribution of A. catalpifolium, accounting for 26.04% of the total population, followed by FHS, ZSC, BGS, and CSM, in that order. Analyses of the community characteristics revealed that the species diversity indices in FHS, BRS, BGS, and CSM were greater than that in ZSC. Analyses of the population age structure of A. catalpifolium revealed the gap in the distribution of the levels of seedlings and young trees. There were serious obstacles to the regeneration of the natural population. We concluded that the obstacle to the regeneration of the population of A. catalpifolium might be caused by the high competitive pressure from the dominant species and the micro-environment in the forest. Understanding the community characteristics and the population structure of A. catalpifolium could provide a theoretical foundation for its reintroduction and recovery. © 2018 Science Press. All rights reserved.     

Dramatic declines in mussel bed community diversity: response to climate change?

Mussel beds along the wave-exposed coast of the eastern North Pacific Ocean serve as an important habitat, harboring a high diversity of species. A comparison of California mussel bed community diversity in 2002 to historical data (1960s to 1970s) revealed large declines (mean loss 58.9%), including some declines >141 species (approximately 80% loss). Concurrent work revealed inconsistent changes in mussel populations (biomass and bed thickness) along the California coast, suggesting that diversity declines may be related to large-scale processes rather than local habitat destruction. Potential factors causing declines in mussel community diversity are discussed, with regional climate change associated with the Pacific Decadal Oscillation and climate change induced alterations of ecological interactions and biological processes suggested as likely causes. Although extensive literature has predicted the potential effects of climate change on global diversity, this study is one of the few examples of declines attributed to climate change.     

Bacterial community structure of Tricholoma matsutake stipe soil by high-throughput sequencing北大核心CSCD

In order to understand the interaction between microorganisms in soil attached to the stipes of Tricholoma matsutake, we utilized high-throughput sequencing technology using an Illumina HiSeq 2500 System (San Diego, CA, USA) to explore the bacterial community structure in such soils and analyzed the effects of microorganisms on the formation and growth of T. matsutake. A total of 6 730 sequences were obtained from the samples, and these sequences were clustered into 928 operational taxonomic units (OTUs) at a 97% similarity level. In addition, these OTUs were grouped into 22 bacterial phyla (including 62 classes, 90 orders, 162 families, and 275 genera) and 2 archaeal phyla (including 4 classes, 6 orders, 7 families, and 8 genera). Proteobacteria was the dominant phylum present in all the samples, and these bacteria were significantly more abundant in soils attached to stipe of T. matsutake than they were in the control samples. Similarly, Beta-proteobacteria were the dominant class, and bacteria in this class were less abundant than they were in the control samples. Moreover, the genus Burkholderia within the Proteobacteria was more abundant in the control samples than in the T. matsutake soil samples. Generally, Proteobacteria, especially the genus Burkholderia, played an important role in the growth of T. matsutake, whereas other bacteria, such as Unknown-Ellin 60, would probably inhibit the growth of T. matsutake. This study showed that bacteria might be involved in the growth of T. matsutake and the formation of its fruiting bodies, but they had no positive relationship with bacterial abundance, which may provide theoretical guidance for the cultivation of T. matsutake. © 2018 Science Press. All rights reserved.     

Comparison of zooplankton community of different areas in Changjiang River estuary北大核心CSCD

To compare the zooplankton communities in the South Branch, North Branch, North Channel and offshore of the Changjiang (Yangtze River) estuary, two cruises were carried out in the autumn of 2009 and the spring of 2010. A total of 27 species of zooplankton were identified in the spring, including 17 in the offshore, 11 in the south branch, 9 in the north branch, and only 5 in the North Channel. In autumn, altogether 71 species were collected, including 6 in the south branch, 11 in the north branch, 8 species in the North Channel area and 63 in the offshore. Either in the spring or autumn, the average species numbers of the offshore were the highest. Additionally, species numbers of the offshore were significantly higher than that in other areas (P < 0.05) for both seasons. There were no significant differences between the species number of the South Branch and the North Branch (P > 0.05). The species number and diversity index of the inner area were lower than that of the offshore. The average diversity index of offshore area was still the highest in both spring (1.69) and autumn (3.73). In spring, the diversity index of the North Channel was the lowest among four areas, while in autumn, that of the South Branch was the lowest (0.49). In spring, Sinocalanus sinensis was the dominant species of the South Branch, North'Branch and North Channel (> 50% of the total collection by number). The dominant species of offshore area were Tortanus vermiculus and Labidocera euchaeta. While in autumn, the dominant species were different for each area. In the South Branch, the most important species was S. dorrii (93.55% of the total collection by number). The main species was S. dorrii in the South Branch area, S. stenellus and T. vermiculusin in the North Branch and Subeucalanus subcrassus in the offshore (< 30% of the total collection by number). Numbers of species and diversity index seemed to vary among different areas of Changjiang estuary. The underline mechanisms of the regional variation in species number were mainly the salinity and suspended sediment concentrations. Generally speaking, zooplankton was more abundant in the polyhaline water. Diversity index was largely affected by both species number and abundance percentage. The zooplankton community was mainly influenced by the Changjiang diluted water and offshore water mass through affecting the salinity. In autumn, the Kuroshio flowed northward carrying polyhaline water, and brought subtropical species to the offshore of the Changjiang estuary. Since the North Channel is located in the estuarine turbidity zone, suspended sediment concentration of that area is higher than the other areas, which might limit the distribution of some species. To sum up, salinity is the most important factor causing the difference of zooplankton community among different areas in the Changjiang estuary. Besides, water masses and estuarine turbidity also influence the zooplankton community.     

REDD+ and forest tenure security: concerns in Nepal’s community forestry

As one of the dominant large-scale mechanisms proposed to combat climate change, biodiversity loss, and rural poverty, REDD+ (Reducing Emissions from Deforestation and Forest Degradation) has added further complexity to the challenging governance of rights and resources in global forests. As REDD+ is commodifying carbon, concerns emerge about how carbon ownership and its rights can be accommodated into the existing framework that governs local forest resource rights. The Nepalese government has formally entered into REDD+ policy preparations, but it lacks clear legal provisions regarding key forest tenure rights such as carbon ownership, benefit sharing, and the political participation of community forest user groups from national to local. As a result, Nepal’s policy process points toward performance-based carbon forestry in a way that may undermine and weaken existing community tenure rights and forest tenure security.

This paper discusses Nepal’s potential impacts of new REDD+ and carbon ownership arrangements on forest tenure security and community-based forest governance. In a threefold methodological approach, the paper presents three scenarios for a REDD+-oriented tenure reform within the existing framework and assesses their concerns through in-depth qualitative interviews with key stakeholders, representatives, and advocates of Nepal’s community forestry system, complemented by a review of government documents and academic literature of REDD+ lessons so far. The analysis identifies critical concerns for forest tenure security, state-community power relationships, and effective local institutions of the commons, and suggests that Nepal’s REDD+ process is taking place at a particularly consequential time for structural changes of the forest governance framework.     

To what extent does upright sessile epifauna affect benthic biodiversity and community composition?

Small-scale habitat complexity, including that caused by biological structures, is an important factor in structuring benthic communities and also sometimes in increasing biodiversity. The aim of this study was to determine if hydroid colonies have an effect on the composition of benthic communities in the Irish Sea, and if so, which components of the fauna are affected. Forty-six seabed core samples were taken by divers from two sites off Port Erin, Isle of Man, Irish Sea. Half of these were centred on hydroid colonies, half were not. All taxa retained by a 63-m sieve from the cores were identified and counted. Community composition and diversity were compared between hydroid and non-hydroid cores using multivariate and univariate methods. Benthic communities were significantly different between the two sample groups. This was almost entirely due to the presence of sessile and mobile epifaunal taxa in the hydroid cores. The tube-building amphipod, Ericthonius punctatus, was particularly abundant attached to the hydroid stems. Infauna was not significantly different between the two groups. Upright sessile epifauna may play a particularly important role in the Irish Sea as a settlement substrate for juvenile scallops (Pecten maximus and Aequipecten opercularis), which are an important fishery resource in this area. The 11-year closure of an area to dredging has not only enhanced scallop stocks but has had the added benefit of enhancing habitat complexity and biodiversity.Communicated by J.P. Thorpe, Port Erin     

Characterizing the vegetation community in the provenance slope with high-frequency debris flow北大核心CSCD

In order to explore the characteristics and species diversity of the vegetation growing in the provenance slope with high-frequency debris flow, we selected the slopes on the north and south sides of the valley in the Jiangjiagou watershed as the research object. The structural characteristics and quantitative compositions of the communities of vegetation growing on different positions of the slopes were investigated. The species composition, important value, species diversity, and ground and underground biomass of the different communities on the slope were statistically analyzed, and the correlations of the ground and underground biomass with the diversity were determined. The results showed that: of the total 49 species found, the herbs were the dominant flora, of which 33 were found on the northern slope and 23 were found on the southern slope. There were significant differences in the species composition and composition of the important values along the different positions on the slope, being mainly affected by the pioneer herbaceous plants. We found that Heteropogon contortus, Eulaliopsis binata, Arthraxon hispidus, and Sesbania cannabina were highly adaptable to debris flow. These four species are common to the area and can be used as the main configuration species for future ecological restoration. There were differences in the community characteristics and species diversity at different positions on the slope. For the southern slope of the valley, the Shannon-Wiener diversity index was in the order: stable zone (2.311) > instable zone (2.161) > deposit zone (2.036), and in the order: deposit zone (2.626) > stable zone (1.338) > instable zone (1.057) for the northern slope. There were significant differences in the biomass, being in the order: stable zone > instable zone > deposit zone, with higher values in the northern slope than in the southern slope. Based on the aforementioned results, we suggest that the restoration of vegetation in the area of the provenance slope having high-frequency debris flow should focus on the prevention and protection of the instable zone of the slope by natural processes of recovery. The deposit zone needs rational remediation measures. We should introduce local shrub and arbor to increase the species composition and promote the development of plant communities with vertical structures. © 2018 Science Press. All rights reserved.     

Characteristics of soil fauna community in the decomposition of Deyeuxia arundinacea litters北大核心CSCD

This study aimed to understand the soil fauna characteristics during the litter decomposition process of perennial herb Deyeuxia arundinacea. The litters were put in 6-, 30-, and 260-mesh litterbags to investigate their mass loss and the dynamics of soil faunal community during Aug. 2013 to Jul. 2014. Faster decomposition rate of Deyeuxia arundinacea in different meshes was found in the early period than in mid- and end-periods. Among different mesh sizes, 6-mesh had the fastest decomposition rate, followed by 30-mesh and 260-mesh. A total of 2218 individuals of soil fauna were obtained in different meshes, with 958, 737 and 523 individuals in 30-, 260- and 6-mesh respectively. Oribatida and Poduridae were the dominant groups, accounting for 73.22% of total individuals. The soil animal individual and group densities shared a very similar trend among the decomposition bags of three aperture sizes, all with obvious characteristics of seasonal dynamic distribution. During the 12 months of decomposition, the density of soil animal groups did not show significant difference between the 6 mesh and 260 mesh decomposition bags except for May. Correlation analysis showed that the group density was highly significantly correlated with average monthly temperature and rainfall, and the individual density significantly correlated with the average monthly temperature. The results indicated that the structure and diversity of soil fauna community of Deyeuxia arundinacea are influenced by hydrothermal conditions. The findings help in understanding the effect of soil fauna to perennial herb litter decomposition.     

Is plant community richness regulated over time? Contrasting results from experiments and long-term observations

There is considerable debate among ecologists as to whether or not communities are saturated. In saturated communities, species richness should remain relatively constant over time, despite compositional turnover, because richness is negatively correlated with colonization and positively correlated with local extinction. Few studies have tested for saturation using temporal observational data as well as diversity-perturbation experiments. We analyzed 10 years of data for plant species richness at 71 sites on contrasting serpentine and non-serpentine soils within Californian (USA) grasslands. We also manipulated local richness and measured its effects on immigration and extinction. Consistent with saturation, we observed that richness was positively correlated with extinction rates and negatively correlated with colonization rates, and randomization tests confirmed that diversity fluctuated less than expected by chance. However, experimental species additions and removals did not affect extinction or colonization, suggesting that richness is not regulated by local species interactions. Instead, we propose three reasons why richness may fluctuate within narrow limits causing the appearance of saturation in temporal observational data sets: negatively autocorrelated patterns of biotic response to yearly conditions, differential affinities of particular species for local conditions, or stochastic abundance-dependent colonization and extinction rates. We illustrate the latter using a metacommunity model.     

Effects of bio-organic fertilizers on pineapple heart rot and bacterial community structure北大核心CSCD

Heart rot is a common soil-borne disease in the pineapple industry, but the situation can be alleviated by the application of bio-fertilizers with beneficial microbiomes. Clarifying the controlling mechanism of bio-organic fertilizer on the high incidence of heart rot is critical in monocultural pineapple cropping patterns. In our study, the soil of continuous cropping pineapple orchards was collected. Three types of carriers (rapeseed cake, peat soil, and coconut bran), biocontrol strains (Bacillus subtilis HL2 and Streptomyces strain HL3), and organic fertilizer (YJ) were composted into different bio-fertilizers (KC, KN, KY, LC, LN, and LY), which were used in pot experiments. The controlling effect of the bio-fertilizer was determined based on the response of pineapple heart rot and bacterial communities to different fertilizing methods. Our results revealed that the incidence of heart rot in bio-fertilizer KC was the lowest, which decreased by 20% and 13.3%, respectively, compared to HF (chemical fertilizer, 16-16-16) and YJ (organic fertilizer). The richness and diversity of soil bacterial communities in all biofertilized treatments (KC, KN, KY, LC, LN, and LY) were significantly higher than those in HF. However, the α-diversity indices of the bio-fertilizers (KC, KN, and KY) were higher than those of LC, LN, and LY, and the bacterial community composition was significantly different. The bacteria GP4, GP6, Bacillus, and Azohydromonas were enriched in KC, KN, and KY, while the relative abundance of Streptomyces increased significantly in LC, LN, and LY. Furthermore, Spearman correlation analysis showed that the relative abundance of these bacterial groups was significantly negatively correlated with the incidence of pineapple heart rot. In summary, the application of bio-organic fertilizers can decrease the incidence of pineapple heart rot by altering the soil bacterial community structure and stimulating beneficial soil microorganisms, which is important for reconstructing the ecological balance in continuous pineapple orchards. © 2022 Authors. All rights reserved.     

Characteristics of bacterial community in Poyang Lake sandy land under different vegetation restoration conditions北大核心CSCD

为掌握不同植被恢复措施下鄱阳湖沙地土壤细菌群落变化特征,以湿地松、香根草、单叶蔓荆、狗牙根等植物恢复措施的沙地土壤为研究对象,采用高通量测序技术,分析植物恢复前后细菌群落变化.结果显示,相较对照组,土壤细菌多样性均有提升,在门水平上,绿弯菌门丰度大幅降低,而变形菌门、放线菌门和厚壁菌门丰度增加.在属水平上,副伯克霍尔德氏菌属、慢生根瘤菌属、芽孢杆菌属、分枝杆菌属等丰度提升,而假单胞菌属丰度大幅下降.植被恢复后,不同植被固氮功能细菌丰度提升,而香根草、狗牙根土壤磷细菌丰度下降,湿地松土壤固氮、解磷功能优势细菌提升幅度为76.11%、51.12%,单叶蔓荆为65.04%、23.17%.土壤容重、有机质、全磷、有效氮是影响功能细菌变化的重要因素,其中有效氮与芽孢杆菌属、分枝杆菌属呈显著水平以上相关性.本研究表明鄱阳湖沙地植被恢复措施提升了固氮细菌的丰富度,但不同植被土壤解磷细菌群落变化差异大;研究结果可为沙地治理提供科学依据.(图6表3参34)     

Long-term changes in phytoplankton phenology and community structure in the Bahía Blanca Estuary, Argentina

The phytoplankton of the Bahía Blanca Estuary, Argentina, has been surveyed since 1978. Chlorophyll a, phytoplankton abundance, species composition and physico-chemical variables have been fortnightly recorded. From 1978 to 2002, a single winter–early spring diatom bloom has dominated the main pattern of phytoplankton interannual variability. Such pattern showed noticeable changes since 2006: the absence of the typical winter bloom and changes in phenology, together with the replacement of the dominant blooming species, i.e. Thalassiosira curviseriata, and the appearance of different blooming species, i.e. Cyclotella sp. and Thalassiosira minima. The new pattern showed relatively short-lived diatom blooms that spread throughout the year. In addition, shifts in the phytoplankton size structure toward small-sized diatoms, including the replacement of relatively large Thalassiosira spp. by small Cyclotella species and Chaetoceros species have been noticed. The changes in the phenology and composition of the phytoplankton are mainly attributed to warmer winters and the extremely dry weather conditions evidenced in recent years in the Bahía Blanca area. Changing climate has modified the hydrological features in the inner part of the estuary (i.e. higher temperatures and salinities) and potentially triggered the reorganization of the phytoplankton community. This long-term study provides evidence on species-specific and structural changes at the bottom of the pelagic food web likely related to the recent hydroclimatic conditions in a temperature estuary of the southwestern Atlantic.     

Ecological literacy and socio-demographics: who are the most eco-literate in our community,and why?

Ecological literacy is founded upon knowledge and understanding about how the ecological systems of the Earth function and support life. A widespread concern that levels of ecological literacy within many contemporary human communities are inadequate to enable effective decision-making about sustainable ways of living led to a rigorous and carefully designed assessment of over 1000 South Australian adults from diverse sectors including industry, government, nongovernment, business and community organisations. This assessment tested for local and global knowledge, including an understanding of the interconnection of natural systems with human society. Quantitative analyses revealed significant relationships between scores and a range of socio-demographic characteristics. Scores varied significantly with gender, age, education, employment, place of growing up and time spent in South Australia (SA). Highest average scores were found in males, middle-age groups, the most highly educated, those with science-related educational backgrounds, those working in environment-related fields, those who grew up in small town environments rather than in large towns or cities and in those who had spent more than 10 years in SA. These findings contribute to a broader study of factors associated with ecologically literate individuals and groups within the western and industrialised adult community of SA. They form a valuable foundation on which to build efforts to further understand and develop ecological literacy within our citizenry and governing bodies.     

Quantitative analysis of riparian herbaceous community in Liaohe River Conservation Area and its tributaries北大核心CSCD

Research on community characteristics of riparian herbs is an important scientific basis of riparian vegetation rehabilitation. This study aimed to investigate the species diversity and quantitative characteristics of riparian herbs in Liaohe River Conservation Area and its tributaries. Herbaceous communities were investigated by sample line method. Group average clustering analysis and detrended correspondence analysis (DCA) were used to find the major environmental factors affecting the distribution pattern of riparian herbaceous communities. The result showed altogether 154 herbaceous species, belonging to 40 families and 96 genera. The riparian herbaceous species diversity was found to be correlated to river slope, sinuosity and stream order, being lower in rivers of mountain area than in rivers of plain area, and higher in tributaries than in Liaohe River Conservation Area. Clustering analysis classified the herbaceous communities into 23 types, being dominated by hygrophytes including communities of Echinochloa crusgalli, Oenanthe javanica, Polygonum hydropiper, Murdannia keisak, Artemisia selengensis, Scirpus triqueter, Heleocharis soloniensis, Pycreus sanguinolentus, Cyperus fuscus, Phragmites australis, Polygonum amphibium, Carex diandra + Artemisia selengensis and Carex diandra + Rorippa islandica. Correlation analysis between DCA ordination axes and environmental factors showed that the altitude, river slope, sinuosity and stream level were the major environmental factors affecting the distribution pattern of herbaceous communities in the riparian zone of Liaohe River Conservation Area and its tributaries. The results of CCA showed that the contribution ratio of stream level was the highest, followed by altitude and slope, with sinuosity the last. The results suggested that riparian herbaceous characteristics are affected by the comprehensive force of altitude, river slope, sinuosity and stream order, and that Calamagrostis epigeios, Triarrhena sacchariflora and Phragmites australis are suitable species for riparian vegetation rehabilitation.     

Identifying trophic relationships within the high Arctic benthic community: how much can fatty acids tell?

Multivariate analysis of fatty acids (FA) profiles proved to be a useful tool for demonstrating feeding preferences of Arctic invertebrates belonging to several taxonomic groups collected during summer and winter seasons in the Spitsbergen fjords (Arctic). Within phytodetrivorous taxa, the enhanced proportions of 16:1n-7, C16 polyunsaturated fatty acids (PUFA) and 20:5n-3 in crustaceans clearly reflected selective ingestion of diatoms, while high amounts of 22:6n-3 and C18 FAs found in molluscs indicated flagellate-based nutrition. High levels of C20 PUFA and 16:1n-7 together with the typical bacterial FAs were found in winter specimens of deposit-feeding polychaetes showing their reliance on highly reworked organic matter during this season. Our results suggest that 18:1n-9 may not be a reliable marker of carnivory feeding within benthic taxa. Lipid signatures of omnivores and carnivores/detrivores usually originated from a variety of dietary sources, of which few possess highly characteristic FA features. Still, elevated levels of Calanus markers (20:1 and 22:1 moieties) characterized species linked to the pelagic food chains, while 20:4n-6 proved to be a useful indicator of foraminiferan consumption. We highlight the need for a multimethod approach, since complexity of benthic food webs along with general lack of unambiguous FA trophic markers prevents tracking of trophic relationships with use of FA analysis alone. Based on their FA composition, we showed that benthic species represent a source of essential PUFA and could play a fundamental role in the Arctic food webs transferring energy derived from variable pelagic and benthic resources to upper trophic levels.     

Comparison on bacterial community of rhizosphere and bulk soil of poplar plantation based on pyrosequencing北大核心CSCD

By the 454 pyrosequencing technology, this research compared the bacterial communities in poplar plantation rhizosphere and bulk soil for an accurate understanding of bacterial community colonization in the two soil environments. The species annotation showed that rhizosphere soil contained 145 bacterial genera and bulk soil contained 141 bacterial genera, with 8 common genera shared by both at a relative abundance of more than 4%. The 8 genera in common were Acidobacterium GP1, Acidobacterium GP3, Acidobacterium GP6, Gemmatimonas, Bradyrhizobium, Burkholderia, Streptomyces and Acidobacterium GP4. The relative abundance of the same bacterial community was significantly different between rhizosphere and bulk soil environments. Alpha diversity analysis showed that the bacterial community diversity of rhizosphere soil was higher than that of bulk soil, but the difference was not significant. The results of bacterial communities sorting could reflect the variation of soil bacterial communities from rhizosphere to the bulk and the spatial variation among different sampling points, indicating a contribution of about 21.2% variance of bacterial communities by the effect of rhizosphere. Beta diversity analysis showed great difference between rhizosphere and bulk soil samples in bacterial community composition. There were 15 genera specific to rhizosphere soil and 11 to bulk soil. The abundance of 23 genera, mainly cellulose degrading bacteria and nitrogen-fixing bacteria, changed significantly. Selectivity of root to rhizosphere microorganisms is an important mechanism leading to significant differences in the rhizosphere microbial community composition and structure, which may significantly impact the carbon and nitrogen cycles of the root-soil interface.     

Diversity and structural characteristics of nitrogen-fixing bacterial community in tobacco-growing soils at different elevations in Panzhihua北大核心CSCD

固氮细菌在土壤氮素转换过程中发挥重要作用.为深入认识攀枝花地区农田土壤固氮细菌群落特征及其与土壤理化性质的关联性,以攀枝花米易县不同海拔高度(1 600 m、1 800 m、2 000 m)植烟土壤为研究对象,采用高通量测序技术(high-throughput sequencing)对nifH基因进行测序,分析固氮细菌群落结构特征和多样性.结果显示,固氮酶活性随海拔升高而逐渐降低,并与土壤有机碳及全氮呈极显著正相关(P <0.01);固氮细菌群落多样性指数在海拔1 800 m处达到最大值.3个海拔土壤共获得高质量序列1 159 980条,所检测到的固氮细菌分属于4个门、11个纲、19个目、29个科、40个属.基于门分类水平分析结果,变形菌门(Proteobacteria)在所有海拔土壤中均为优势固氮菌群,相对丰度达64.69%-78.36%;而蓝细菌门(Cyanobacteria)仅在海拔高度2 000 m时为优势类群.在属水平上,伯克霍尔德菌属(Burkholderia)、克雷伯氏菌属(Klebsiella)相对丰度分别为海拔高度1 800 m与2 000 m土壤优势菌属,而类伯克霍尔德氏菌属(Paraburkholderia)是所有海拔土壤中的主要菌属.采用随机森林分析评估和筛选标志物种,确认Azohydromonas对固氮细菌群落结构差异存在重要影响.结合Pearson相关性分析与冗余分析结果,土壤含水量、硝态氮、碱解氮与有效磷是造成不同海拔土壤固氮细菌群落特征差异的主要环境因子.本研究表明海拔梯度及响应其变化的土壤理化因子,对调控固氮细菌群落结构与多样性有较大影响.(图8表3参41)     

Dynamics of bacterial community of Suillus granulatus mushroom shiro in Pine (Pinus tabuliformis) forests北大核心CSCD

To evaluate bacterial community variation in the mushroom shiro of Suillus granulatus during fruiting, we collected soil samples from the mushroom shiro in the pine (Pinus tabuliformis) forest of mountainous area in Beijing from May to November and evaluated the bacterial community using polymerase chain reaction - denaturing gradient gel electrophoresis (PCR-DGGE). Total soil DNA was extracted using a commercial soil DNA isolation kit. PCR amplification and DGGE were performed using bacterial universal primers 338F and 518R. The specific bands were excised from the gel and sequenced. The results revealed that soil bacterial community maintained considerably high level and changed seasonally with the mushroom fruiting. In total, 53 bands of DGGE profiles were sequenced and divided into 5 phyla (Acidobacteria, Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria and 22 genera (Acidobacterium, Aminobacter, et al). Species from Proteobacteria and Acidobacteria were the dominant bacterial groups sharing considerably high relative abundance, while class a-Proteobacteria was the most abundant group. The variation of the relative abundance of γ-Proteobacteria species was consistent with the mushroom fruiting season. The relative abundance of Acidobacteria species obviously increased before mushroom flush (in July). The fruiting of S. granulatus and the relative abundance of γ-Proteobacteria were correlated with each other. The present study provided a basis for conservation and domestication of mushroom S. granulatus.