Cytogenetic analysis of Oedalechilus labeo (Pisces: Mugilidae), with a report of NOR variability

 A cytogenetic analysis by several staining techniques was carried out on Oedalechilus labeo specimens from the west coast of Italy, in order to extend the karyological knowledge on Mediterranean mullets. The karyotype of the species is composed of 46 acrocentric and 2 subtelocentric chromosomes. Constitutive heterochromatin was found to be restricted to the centromeres. Fluorochrome staining revealed a uniform base composition along the chromosome arms. Nucleolus organizer regions (NORs) are located on the short arms of chromosome pair 9 and can be either homomorphic or quite heteromorphic in size. In some specimens chromomycin A₃-staining and fluorescence in situ hybridization with 18S rDNA revealed a third additional and inactive NOR on the short arms of a medium-sized chromosome. This is the first report of NOR variability in Mugilidae, a family generally characterized by a quite conservative karyotype. Heterochromatin composition and NOR location differentiate O. labeo from a cytotaxonomical point of view from the Liza species studied, Liza being considered the genus from which the genus Oedalechilus derived. Received: 10 April 1999 / Accepted: 21 October 1999     

Host specificity of the symbiotic cyanobacterium<Emphasis Type="Italic"> Oscillatoria spongeliae</Emphasis> in marine sponges,<Emphasis Type="Italic"> Dysidea</Emphasis> spp.

Marine sponges can host a variety of cyanobacterial and bacterial symbionts, but it is often unclear whether these symbionts are generalists that occur in many host species or specialists that occur only in certain species or populations of sponges. The filamentous cyanobacterium Oscillatoria spongeliae is found in the sponges Dysidea n. sp. aff. herbacea 1A and 1B, and similar cyanobacteria are found in D. n. sp. aff. granulosa. We amplified and sequenced sponge nuclear ribosomal DNA (rDNA) and cyanobacterial 16S rDNA from specimens of these three sponges. We then used these sequences to construct phylogenies for host sponges and their symbiotic cyanobacteria. Each of these three sponge species hosts a distinct cyanobacterial clade, suggesting a high degree of host specificity and potential coevolution between symbiotic cyanobacteria and their host sponges.     

Molecular genetic evidence for probable reticulate speciation in the coral genus Madracis from a Caribbean fringing reef slope

For many corals, the existence of morphologically distinct yet sympatric populations/species implies reproductive isolation. Conversely, the presence of many intermediate and overlapping morphologies combined with synchronous, mass spawning suggests incomplete reproductive isolation. In Madracis (Scleractinia: Astrocoeniina: Pocilloporidae), high levels of morphological plasticity among the five most commonly recognized species (M. mirabilis, M. senaria, M. decactis, M. formosa and M. pharensis) on Caribbean reefs led us to question species boundaries. Phylogenetic relationships were investigated at the intra-individual, inter-individual and inter-specific levels using the ITS1-5.8S-ITS2 region (ca. 613 bp) of the ribosomal DNA cistron. Inter-specific divergence was ca. 6%, while intra-individual and intra-specific divergences ranged from 0% to 4.9% and 3.3% to 3.5%, respectively. M. senaria and M. mirabilis formed monophyletic groups. M. formosa, M. decactis and M. pharensis formed a paraphyletic complex. High levels of intra-individual and intra-specific ITS polymorphism in the decactis-formosa-pharensis cluster may be the result of very recent speciation within the clade (i.e. maintenance of ancestral polymorphism and incomplete lineage sorting), or the result of repeated introgressive hybridization among the three taxa. Polymorphism parsimony of 89 sites, including nine that showed additivity, revealed a phylogenetic topology more consistent with inter-taxal hybridization. Results are discussed in terms of weak reproductive barriers, and phylogenetic fission and fusion under Veron's model of reticulate speciation in corals. Ecological studies involving Madracis should consider M. decactis, M. formosa and M. pharensis as a complex.     

Phylogenetic relationship among several genera of Dictyotaceae (Dictyotales, Phaeophyceae) based on 18S rRNA and partial rbcL gene sequences

The partial sequences of the 18S rRNA gene and the rbcL gene, RuBisCo spacer region of representatives of the Dictyotaceae were determined and compared to resolve their phylogenetic relationships. A total of 1,861 base pairs of 18S rDNA sequences were aligned and examined. There was a high similarity of nucleotide sequences within the tribe Dictyoteae (99.4-99.6%) and the tribe Zonarieae (92.8-99.8%). The largest intergeneric divergence within the Dictyotaceae was 7.31%, between Dilophus and Zonaria. The aligned 422 bases of partial rbcL gene sequences gave a similar phylogenetic relationship among taxa to those of the 18S rDNA sequences, although our alignment covered less than 30% of the whole gene. All genera of Dictyotales consisted of several clades forming a polychotomy in MP trees based on partial rbcL gene sequences and on 18S rDNA sequences. The genera within the tribe Dictyoteae formed a clade, a Dictyota-Phacydictyon-Dilophus clade, while genera of the tribe Zonarieae formed four clades: Padina; Distromium-Lobophora-Zonaria; Spatoglossum-Lobospira; and Dictyopteris-Spatoglossum. All genera of the Dictyotaceae included in these sequence analyses are classified into five groups, which have little phylogenetic resolution among them. The genera classified in the tribe Zonarieae according to Womersley's criteria do not appear to be monophyletic, based on our analyses. Although not all genera of Dictyotaceae were analysed, our data suggest that the status of the meristem cells should not be a criterion for separating tribes within the family Dictyotaceae and that other hierarchical systems should be adopted to properly reflect phylogenetic relationships.     

Genetic evolution among selected members of the genus Naso (Nasinae), "unicornfishes" from Guam

A species-level phylogeny of selected surgeonfishes in the genus Naso (Acanthuridae: subfamily Nasinae) was constructed using allozyme data and found to be concordant with previous inferences drawn from morphological data. Naso spp. examined from waters surrounding Guam between 1992 and 1994 were: N. caesius (Randall and Bell, 1992), N. hexacanthus (Bleeker, 1855), N. lituratus (Schneider, 1801), N. thynnoides (Valenciennes, 1835), and N. unicornis (Forskål, 1775). Acanthurus lineatus (Linnaeus, 1758) (Acanthuridae: subfamily Acanthurinae) and Zanclus cornutus (Linnaeus, 1758) (Zanclidae) were included for the purpose of outgroup comparison. Analyses of the allozyme data set generated from 16 presumptive loci using both cladistic and phenetic tree-constructing techniques identified the sibling species N. caesius and N. hexacanthus as the most genetically similar taxa among the Naso species surveyed. The pair shared the most synapomorphic alleles and the lowest degree of genetic divergence with respect to other species studied. The unweighted pair-group method using the arithmetic mean (UPGMA) and the neighbor-joining (NJ) topologies, along with two synapomorphic alleles (Aat-2 and Gpi-A), characterize N. caesius, N. hexacanthus, N. lituratus, and N. unicornis as a monophyletic group. Many allelic autapomorphies were detected in N. thynnoides, a member of the subgenus Axinurus. This supports the morphological data, which suggest that one-plated unicornfishes form a monophyletic group. The proposed partial phylogeny inferred from the allozyme data is concordant with the morphological differences (i.e. dentition, osteology, and myology) that have been used to support the partition of the genus Naso into the subgenera Axinurus and Naso.     

Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae

DNA sequences for a 639 bp region of mitochondrial cytochrome oxidase I (mtCOI) were determined for 34 species of ten genera in two families of calanoid copepods, including: Calanoides, Cosmocalanus, Meoscalanus, Nannocalanus, Neocalanus, and Undinula (family Calanidae); and Clausocalanus, Ctenocalanus, Drepanopus, and Pseudocalanus (family Clausocalanidae). MtCOI gene sequences proved to be diagnostic molecular systematic characters for accurate identification and discrimination of the species. Levels of mtCOI variation within species (range: 1-4%) were significantly less than those between species (9-25%). Higher levels of intraspecific variation (>2%) usually resulted from comparisons between ecologically distinct or geographically isolated populations. MtCOI sequence variation resolved evolutionary relationships among species of Clausocalanus, Neocalanus, and Pseudocalanus, although there was evidence of saturation at some variable sites. Phylogenetic relationships among 11 copepod genera (adding Calanus to the list above) were reconstructed using a 660 bp region of nuclear small-subunit 18S rRNA, a slowly evolving gene that showed no variability within a species and differed by <1-6% among the genera. The 18S rRNA molecular phylogeny was consistent with the accepted limits of the Calanidae and Clausocalanidae and clearly resolved relationships among genera within each family. This molecular systematic and phylogenetic study was part of the ZooGene project, an international partnership to create a DNA sequence database as a tool for uniform, molecularly based species identification of planktonic calanoid copepods and euphausiids.     

Quinones in cockchafers: additional function of a sex attractant as an antimicrobial agent

Summary. Females of the forest cockchafer, Melolontha hippocastani Fabr. (Coleoptera: Scarabaeidae, Melolonthinae), are known to produce toluquinone and 1,4-benzoquinone. The latter component has been shown in our earlier studies to act as a sex attractant that enhances synergistically the attraction of males towards plant volatiles induced by feeding females. Analyses of whole body extracts from adults and grubs (L3) of M. hippocastani by coupled gas chromatography--mass spectrometry revealed the presence of 1,4-benzoquinone and toluquinone also in males and larvae. Quantitative analyses showed that extracts from females contained significantly more of 1,4-benzoquinone and toluquinone than extracts from males. Remarkably, extracts from grubs contained significantly higher amounts of both compounds than extracts from females. Inhibition assays using Escherichia coli, Saccharomyces cerevisiae, and the entomopathogenic fungi Metarhizium anisopliae and Beauveria brongniartii revealed inhibitory effects of 1,4-benzoquinone and toluquinone against all tested microorganisms. However, the amounts necessary for inhibition of entomopathogenic fungi and S. cerevisiae in the laboratory assay were higher than those found in the extracts from M. hippocastani.     

Cytogenetic analysis of Epinephelus marginatus (Pisces: Serranidae), with the chromosome localization of the 18S and 5S rRNA genes and of the (TTAGGG)n telomeric sequence

 A cytogenetic analysis was carried out on specimens of Epinephelus marginatus (Lowe, 1834) from three localities in the Mediterranean Sea, to deepen knowledge of the chromosome complement of the species and identify any possible population-specific cytogenetic markers. All specimens had a 2n = 48 acrocentric karyotype with two Ag-, chromomycin A₃- and C-positive NORs (nucleolar organizer regions) in the subcentromeric region of the smallest chromosome pair. The constitutive heterochromatin was distributed centromerically. Except for NORs, neither eu- nor heterochromatin show fluorescence after fluorochrome staining, i.e. there is no localized increase of AT- or GC-rich DNA. In all populations, the (TTAGGG) _n telomeric sequences are restricted to the telomeres, and the 18S and the 5S rDNA clusters are located on different chromosome pairs. In specimens from Sardinia, additional signals after C-banding, Ag-staining and FISH (fluorescence in situ hybridization) with 18S rDNA can be observed in the telomeric region of one or two large-sized chromosomes, classified as No. 2. This suggests that additional and variable NORs could be detected in the species in addition to those on the genus-specific, NOR-bearing Chromosome Pair 24. Received: 20 October 1999 / Accepted: 14 April 2000     

Development of a PCR strategy for thraustochytrid identification based on 18S rDNA sequence

The identification and characterization of the thraustochytrids, an emerging economically and biotechnologically important group of marine heterotrophic protists, is usually based on morphological characters. In this research we used molecular markers to identify thraustochytrids. We designed three sets of primers based on the 18S rDNA sequence alignment of known strains and employed a PCR (polymerase chain reaction) strategy to identify unknown thraustochytrid isolates. DNA from 26 thraustochytrids (three isolated from primary cell cultures of the tunicate Botryllus schlosseri and 23 from a coral holding aquarium) were amplified by these primers, revealing 21 isolates with three bands each, which were assigned to two groups according to PCR fragment sizes. Taxonomic characterizations were deduced by comparing with GenBank data. Four isolates were further studied by sequencing their 18S rDNA. Sequence alignments and phylogenetic analysis revealed that isolates from the coral aquarium (7-5 and 8-7) were highly similar to each other and 95.0-97.0% similar to Thraustochytrium multirudimentale and Schizochytrium minutum. Isolates from the tunicate primary cell cultures (BS1 and BS2) were also closely related to each other and 84.3-86.0% similar to labyrinthulid quahog parasite and Thraustochytrium pachydermum. AFLP (amplified fragment-length polymorphism) analysis revealed 2.5-3.6% differences within the genomic DNA of each group, showing that each isolate is different, although isolates within each group may belong to the same species, in spite of differences found in the general morphology.     

Molecular taxonomy of vestimentiferans of the western Pacific and their phylogenetic relationship to species of the eastern Pacific. I. Family Lamellibrachiidae

Phylogenetic relationships among vestimentiferans in the family Lamellibrachiidae collected from ten sites in the western Pacific were analyzed on the basis of the nucleotide sequence of part of a mitochondrial gene for cytochrome oxidase I. The 103 individuals analyzed were tentatively classified into five species: namely, Lamellibrachia satsuma, three tentative species inhabiting Japanese waters and one tentative species from the Manus Basin. Phylogenetic analysis of the four tentative species, L. satsuma, and two lamellibrachiids, whose sequences had been reported previously, namely L. columna from the Lau Basin and L. barhami from the Oregon Margin and the Middle Valley, revealed that the lamellibrachiids from Japanese waters were not monophyletic. While two tentative species from Japanese waters and L. columna formed a monophyletic group, the other tentative species from Japanese waters was closely related to the tentative species from the Manus Basin. L. satsuma was shown to be phylogenetically distinct from other lamellibrachiids of the western Pacific. A lamellibrachiid that had been collected from the Nikko Seamount was also demonstrated to be L. sastuma.     

Osmoregulation in fiddler crabs (<Emphasis Type="Italic">Uca</Emphasis>) from temperate Atlantic and Gulf of Mexico coasts of North America

Fiddler crabs (Crustacea: Decapoda; genus Uca) were collected from 16 locations along the temperate Atlantic and Gulf of Mexico coasts of eastern North America for osmoregulation studies. Three species, U. pugilator, U. pugnax and U. minax, were taken from habitats between Cape Cod, MA, and St. Mary's River, Nassau Co., GA Seven species, U. panacea, U. speciosa, U. spinicarpa, U. longisignalis, U. rapax, U. pugilator and U. minax, were collected in habitats between the Ochlochonee River, Liberty Co., and Thompson's Bayou, Escambia Co., along the Gulf coast of northwest Florida. To examine differences in osmoregulatory capabilities among the species, specimens were placed in various concentrations of artificial seawater (0-3450 mOsm) for 5 days. The oligohaline or "freshwater" species, U. minax, U. spinicarpa and U. longisignalis, possess the lowest average hemolymph osmolality. They are unable to control hemolymph osmolality above 2000 mOsm. On the other hand, the euryhaline species, U. speciosa, U. panacea, U. pugilator and U. pugnax, have much higher average hemolymph osmolality. They are able to withstand an osmotic challenge of 2200 mOsm or greater. Among the eight species, U. panacea and U. pugilator are able to osmoregulate across the broadest range of seawater concentrations (0-2800 mOsm). After an examination of the osmoregulation in several populations of U. minax, U. pugilator and U. pugnax, physiological adaptation is apparent in the two former species, but not the latter. Experimental evidence for capacity adaptation was examined in the freshwater species, U. minax. If slowly adapted to hypertonic seawater (1800 mOsm) for 14 days, this species is able to withstand much higher osmotic pressures than unadapted crabs. Although hemolymph isosmotic concentration remains the same, the limits for regulation are extended to higher osmolality. Consequently, as a result of studying osmoregulation in several species of Uca captured at various locations across their geographic range in the temperate zone, a clearer view of water-balance physiology is available for the genus. The Uca spp. are not uniform in osmoregulatory abilities. There is considerable inter- and intraspecific physiological variation associated with the ecological distribution of each species, respectively.     

Cytogenetic characterization of the greater amberjack, Seriola dumerili (Pisces: Carangidae), by different staining techniques and fluorescence in situ hybridization

A cytogenetic analysis by several staining techniques was carried out on specimens of Seriola dumerili from the Tyrrhenian coast of Sicily. The karyotype was found to be composed of 48 chromosomes in all the specimens examined. All chromosomes are subtelo- and acrocentrics, except for one pair of small-sized submetacentric chromosomes. After Ag-staining, nucleolus organizer regions (NORs) can be observed on the short arms of a medium-sized subtelocentric chromosome pair, and after chromomycin A₃-staining a bright fluorescent signal is evident at the same sites. The 18S rDNA mapping by fluorescence in situ hybridization confirms this unique NOR location. The constitutive heterochromatin is mainly restricted to centromeres and the fluorochrome-staining by chromomycin A₃ and 4′,6-diamidino-2-phenylindole revealed a uniform base composition along the chromosomal arms; therefore stock/population-specific marker chromosomes cannot be identified. Such cytogenetic features, however, rule out the presence of morphologically differentiated sex-chromosomes in the greater amberjack. Received: 16 January 1997 / Accepted: 31 January 1997     

Evidence of different reproductive traits in the transisthmian sister species, <Emphasis Type="Italic">Alpheus saxidomus</Emphasis> and <Emphasis Type="Italic">A. simus</Emphasis> (Decapoda,Caridea, Alpheidae): description of the first postembryonic stage

The emergence of the Isthmus of Panama, approximately 3.0-3.5 million years ago, established two very different marine systems (the Caribbean and the eastern Pacific) and separated previously continuous marine populations. The geographic isolation of transisthmian sister species provides an excellent basis for the study of divergence and speciation processes. Here we describe the morphology of the first postembryonic stage of Alpheus saxidomus and A. simus, two rock-boring alpheids; the estimated time since divergence for this transisthmian pair ranges from 4.4-6.1 to 3-9 million years. The presence of a first zoeal stage in A. saxidomus, e.g., without pleopods and a telson with 7+7 setae, indicates a prolonged developmental sequence. In contrast, hatchlings of A. simus are substantially more developed and resemble juveniles. Thus, the developmental modes of A. saxidomus and A. simus are strikingly different with abbreviated, most probably direct, development in the latter species. Reduced food availability in the Caribbean compared to the Pacific coast is likely to be a possible reason for the evolution of such important differences in life history traits of the two transisthmian sister species. It is suggested that a transition from prolonged to abbreviated development evolved gradually during the estimated time since divergence; however, such a shift may have taken place within a substantially smaller time span.     

Cellulose digestion and phenol oxidation in coastal isopods (Crustacea: Isopoda)

In order to test three hypotheses on digestive constraints that may have affected the colonization of land by isopods, two marine isopods and one semi-terrestrial species were screened for their ability to oxidize phenolic compounds and digest cellulose in natural and artificial diets. Ligia pallasii (Isopoda: Oniscidea) and Gnorimosphaeroma oregonense (Isopoda: Sphaeromatidea) oxidized dietary phenolics, but Idotea wosnesenskii (Isopoda: Valvifera) did not, even though it feeds on seaweeds that are rich in phenolics. All three species were able to digest some cellulose, but this ability was least developed in the marine phytophagous species, Idotea wosnesenskii, and best developed in the semi-terrestrial L. pallasii. After reducing the number of endosymbiotic bacteria in the hepatopancreas (midgut digestive gland) by feeding antibiotics, cellulose digestion in L. pallasii was significantly reduced. Our results are consistent with the hypotheses that (1) the ability to oxidize phenolics is absent in phytophagous marine isopods, but present in saprophagous marine and semi-terrestrial species, (2) the ability to digest cellulose was an important pre-adaptation facilitating a fully terrestrial life-style in isopods, and (3) endosymbiotic bacteria in the hepatopancreas aid digestion in terrestrial isopods, and to a lesser degree in semi-terrestrial species, but not in marine isopods.     

Multiplexed species-specific PCR protocol to discriminate four N. Atlantic Calanus species, with an mtCOI gene tree for ten Calanus species

Accurate species identification is the cornerstone of any ecological study - yet this fundamental step is not always possible for marine zooplankton. Routine species' identification, especially of juvenile andlarval stages, is difficult for Calanus species (Copepoda; Calanoida) in the N. Atlantic Ocean, where two or three species may co-occur. A rapid, simple, and inexpensive molecularly based protocol to identify individual copepods of any life stage has beendeveloped. This protocol will routinely identify four Calanus species in the N. Atlantic and will help to accurately understand the role of each species in coastal and open ocean ecosystems. The DNA sequence of a 633 bp region of the mitochondrial cytochrome oxidase I (mtCOI) was determined for ten Calanus species: C. australis (Brodsky, 1959), C. chilensis (Brodsky, 1959), C. finmarchicus (Gunnerus, 1770), C. glacialis (Jaschnov, 1955), C. helgolandicus (Claus, 1863), C. hyperboreus (Krøyer, 1838), C. marshallae (Frost, 1974), C. pacificus (Brodsky, 1948), C. simillimus (Giesbrecht, 1902), and C. sinicus (Brodsky, 1965). MtCOI sequences were used to design species-specific oligonucleotide primers for C. finmarchicus, C. glacialis, C. helgolandicus, and C. hyperboreus and to optimize a competitive, multiplexed, species-specific PCR (SS-PCR) protocol to discriminate the four species. This corrects and improves a previously published protocol for three Calanus species (Bucklin et al. 1999: Hydrobiologia 401:239-254), unambiguously identifying individual copepods and copepodites from diverse geographic regions of the four species' ranges. In order to further examine the pattern of mtCOI evolution within Calanus (an important consideration for molecular systematic characters), consensus mtCOI sequences were used to reconstruct phylogenetic relationships among the ten species; the mtCOI gene tree agreed with morphological and molecular (based on mt16S rRNA) phylogenies, except that the affiliation of C. sinicus could not be resolved.     

A novel Vibrio sp. pathogen of the coral Pocillopora damicornis

A coral pathogen was isolated from the diseased tissue of Pocillopora damicornis in Zanzibar. The pathogenic bacterium, referred to as Vibrio coralyticus YB, was classified as a member of the genus Vibrio. Based on its 16S rDNA sequence, V. coralyticus is probably a new species. In controlled aquaria experiments at 26-29°C, inoculation of pure cultures of V. coralyticus YB either into the seawater or by direct contact onto the coral caused tissue lysis of P. damicornis fragments. At 29°C, lysis began as small white spots after 3-5 days, rapidly spreading so that by 2 weeks the entire tissue was destroyed, leaving only the intact bare skeleton. When an infected diseased coral was placed in direct contact with a healthy one, the healthy coral lysed in 2-4 days, further indicating that the disease was contagious. Inoculation with as few as 30 bacteria ml^-1 was sufficient to infect and lyse corals. Seawater temperature was a critical variable for the infectious process: infection and lysis occurred rapidly at 27-29°C, slowly at 26°C and was not observed at 25°C. The data suggest that the presence of V. coralyticus YB, even in low numbers, in seawater surrounding a coral reef will lead to tissue destruction of P. damicornis, when seawater temperatures rise.     

DNA sequence evidence for speciation,paraphyly and a Mesozoic dispersal of cancellothyridid articulate brachiopods

Because the classification of extant and fossil articulate brachiopods is based largely upon shell characters observable in fossils, it identifies morphotaxa whose biological status can, in practice, best be inferred from estimates of genetic divergence. Allozyme polymorphism and restriction fragment length polymorphism of mitochondrial DNA (mtDNA RFLP) have been used to show that nuclear and mitochondrial genetic divergence between samples of the cancellothyridid brachiopods Terebratulina septentrionalis from Canada and T. retusa from Europe is compatible with biological speciation, but the genetic distances obtained were biased by methodological limitations. Here, we report estimates of divergence in 12S rDNA mitochondrial sequences within and between samples of these brachiopods. The sequence-based genetic distance between these samples (5.98ǂ.07% SE) is at least 10 times greater than within them and, since they also differ in a complex life-history trait, their species status is considered to be securely established. Divergence levels between 12S rDNA genes of three other cancellothyridids, T. unguicula from Alaska, T. crossei from near Japan, and Cancellothyris hedleyi from near Australia are higher than between the two North Atlantic species, and the mean nucleotide distance between all these cancellothyrids is similar to the mean distance between species of Littorina (Mollusca: Gastropoda). Sequences of both 12S and 16S genes from cancellothyridids and other short-looped brachiopod species show neither saturation nor lineage-specific rate differences and, when analysed with different outgroups, either separately or together, yield one unexpected, but well-supported, tree with Alaskan T. unguicula basal and C. hedleyi nested within Terebratulina, i.e. these genera are paraphyletic. A geologically dated divergence between Antarctic and New Zealand species of the short-looped brachiopod Liothyrella is used to calibrate the rate of 12S divergence at ca. 0.1% per million years (MY), and this rate is used to infer that T. septentrionalis and T. retusa have been diverging for ca. 60 MY and that they and T. unguicula have been diverging from their last common ancestor for ca. 100 MY. This indicates a Mesozoic origin for the present-day distribution of cancellothyridids and the basal position of T. unguicula suggests a possible North Pacific centre of origin, with separate Atlantic and Pacific radiations. The inclusion of Cancellothyris within Terebratulina also shows that adult shell characters such as umbo, foramen and symphytium shape, whilst probably indispensible for the practical classification of fossils, are not reliable guides to genealogy.     

Feeding ecology of five fishes from the mid-slope micronekton community off southern Tasmania, Australia

We examine the feeding ecology of characteristic micronekton species inhabiting the mid-slope region (~700 to 1,500 m depths) off southern Tasmania. Five fishes, Diaphus danae, Hygophum hanseni, Lampanyctus australis (Myctophidae), Phosichthys argenteus (Phosichthyidae) and Chauliodus sloani (Chauliodontidae), were sampled by depth-stratified midwater trawling on a diel and seasonal basis. Overall, 74 prey taxa were identified from 2,132 stomachs. Euphausiids (mostly Euphausia spinifera and E. similis) and calanoid copepods (mostly Pleuromamma species) were the main prey of the three myctophids; P. argenteus ate fishes and decapods in addition to the euphausiids, while C. sloani ate only fishes. Copepods were less important in the diets of larger D. danae, L. australis and P. argenteus and were replaced by euphausiids in the myctophids and by fishes in P. argenteus. In autumn, when euphausiid biomass increased six-fold, all three myctophids and P. argenteus fed most intensively and consumed a high proportion of euphausiids. The three myctophids appeared to feed nocturnally. Differences in the timing and duration of feeding corresponded to differences in their spatio-temporal overlap with key prey. Daily rations of H. hanseni (1.93% dry-weight biomass) and L. australis (1.43%), estimated from data on stomach fullness, were typical for temperate myctophids and higher than that of the non-migratory P. argenteus (0.43%). The vertical flux of near-surface plankton production to the mesopelagic food web is based primarily on diel feeding in the upper water column (<500 m) rather than consumption of species that migrate seasonally into the deeper mesopelagic zone. Because species such as P. argenteus and C. sloani feed above the third trophic level, their predators, including the commercially important orange roughy, are feeding between levels four and five.     

Size-related trophodynamic changes in three target fish species recovering from intensive trawling

The consequences for food-web structure of protecting marine communities from trawling have been little explored. We investigated the Gulf of Castellammare, northwest Sicily, where a trawl ban initiated in 1989 has led to great increases in the biomass of some target species. Using stable isotopes of carbon and nitrogen, our objectives were to see if mean trophic level and omnivory had increased after the ban in three of the most common fishery-target species, namely, the anglerfish Lophius budegassa, Mediterranean hake Merluccius merluccius, and red mullet Mullus barbatus. We compared size data from before and after the fishery closure, but we also compared recently derived data from outside and inside the closed area. In all three species '¹³C and '¹⁵N were found to differ markedly depending on fish size. '¹³C was found to decrease in L. budegassa and Merluccius merluccius but increase in Mullus barbatus with increasing fish length. '¹⁵N increased in all three species, and this was thought to reflect feeding at increasingly higher trophic levels during the animals' lives. Mean length, and therefore '¹⁵N-derived trophic level, increased after the trawl ban only in the anglerfish L. budegassa. Based on '¹³C and '¹⁵N data, none of the species became more or less omnivorous after the ban. After 9 years of no trawling, increases in numerical abundance were not accompanied by substantial size-related trophodynamic shifts in any of the three species of fish studied.     

Molecular response of the sponge Suberites domuncula to bacterial infection

The aim of this study was the documentation of the molecular immune response of Suberites domuncula upon bacterial infection. Additionally, the bacteria that are naturally present in the sponge after prolonged aquarium maintenance were characterized. After 6 months of maintenance of S. domuncula in seawater aquaria, only one bacterial 16S rDNA sequence could be recovered, which belongs to the genus Pseudomonas. Concomitantly, morphologically uniform bacteria were found encapsulated in bacteriocytes. These findings indicate that certain bacteria, possibly of the genus Pseudomonas, are able to persist for long periods in host bacteriocytes. Subsequent to performing a previously established infection assay with S. domuncula, a potentially pathogenic Vibrio sp. was isolated from the tissues. Furthermore, the host tissue disintegrated and asexual propagation bodies (gemmules) were formed. In order to gain insights into the molecular events occurring after bacterial infection, the stress-response kinases, p38 protein kinase and JNK protein kinase, were analyzed. It is demonstrated that these two kinases are activated (phosphorylated) upon incubation of the tissue with the bacterial endotoxin lipopolysaccharide (LPS). Moreover, LPS strongly inhibits protein synthesis. It is concluded that there are many functionally different interactions between S. domuncula and bacteria and that the animal possesses mechanisms to differentiate between bacteria and to respond accordingly.