Benthic polychaete assemblages and their relationship to the sediment in Port Madison,Washington

Two indices of community association and a 3 dimensional ordination of stations were used to elucidate the relationship between small-scale changes in species, composition of polychaete assemblages and changes in the physical character of the sediment, at 9 stations along a 1.5 km subtidal transect. There were no faunal or physical discontinuities that might have been used to delineate boundaries of polychaete communities, except at a very shallow station where the effects of extreme fluctuations of temperature and salinity were evident. The degree of similarity between assemblages was related to the similarity of the sediments at the different stations. In particular, the changes in species composition appeared to correspond most clearly to differences in the clay content of the sediment.     

Spatio-temporal variation of hydroids and polychaetes associated with Cystoseira amentacea (Fucales: Phaeophyceae)

The temporal and spatial distribution of hydroids (sessile fauna) and polychaetes (vagile) on the brown alga Cystoseira amentacea (Fucales: Phaeophyceae) have been studied in the mid-littoral zone of the Apulian coast (Italy). Samplings were carried out in February and July 1997, at 1.5 m depth, at three sites (Gargano, Costa Merlata and Otranto), about 200 km apart from each other. Three replicates per site were collected for polychaetes, and another three, for hydroids. Samples yielded 142,426 polyps belonging to 20 hydroid species and 3,088 polychaete specimens belonging to 58 species. Seasonal variations in abundance and number of species were evident in hydroids. The only species probably exclusive of Cystoseira (the hydroid Clytia viridicans) was present only in the summer. Polychaetes showed marked seasonal differences only at the Gargano site. Multivariate techniques were used to compare, in both periods, assemblages within and among sites. Analysis of similarity testing revealed that, for both polychaetes and hydroids, assemblage structures significantly differed among sites and between seasons. Thus, the null hypothesis that the distribution in time and space of the epifauna on the same algal species is homogeneous over a wide geographical scale has been rejected, in spite of the homogeneity of the substrate. In both groups, quantitative differences of a few species seemed to be more important than qualitative ones in determining the spatial separation of sites, the species pool remaining rather consistent. A small-scale variability among replicates was also detected, especially at Gargano, for hydroids. Since the epifauna can allow better comparisons among sites than the actual distribution of the algal species, both sessile and vagile epiphytes of Cystoseira can be considered valid tools for evaluating environmental changes on coastal hard-bottom communities.     

Ecology of Conus on eastern Indian Ocean fringing reefs: Diversity of species and resource utilization

The most diverse assemblages of the genus Conus known occur on fringing coral reefs in Thailand and Indonesia. As many as 27 congeneric species of these gastropods inhabit a single reef; in all, we examined 1,350 individuals of 48 species. Several attributes of the populations we observed conform to expectations of a model of ecological characteristics of bench and reef Conus proposed by Kohn (1971a). Number of species (S) averaged 15, and species diversity (H″) averaged 2.3 in the most heterogeneous habitat type — topographically complex, subtidal reef platforms (Type III habitat). Both species richness and evenness of distribution of individuals among species contribute strongly to H″. Fewer congeners and greater numerical dominance by single species characterize more homogeneous habitats. On subtidal reef platforms with large areas of sand substrate and less coral limestone (Type I–III habitat), mean values were S=10, and H″=1.6. In the one intensively studied, truncated reef-limestone platform (Type II–III intermediate habitat), S=13 and H″=1.4. Summed population density of all Conus species in Type III and I–III habitats is similar (0.02 to 0.05 individuals /m²) and comparable to estimates from similar habitats elsewhere in the Indo-West Pacific region. Mean density (0.7/m²) and other population attributes in Type II–III habitat more closely resemble those of Type II than Type III habitats in general. We combined analysis of species diversity and other attributes of assemblages in habitats of different environmental complexity with analysis of microhabitat and food-resource utilization, in order to demonstrate the extent to which specialization on different resources occurs in assemblages differing in diversity and habitat type. In the habitats studied, co-occurring species of Conus specialized to a greater extent on different prey species than on different microhabitat patches, but degree of microhabitat specialization was greater than in similarly complex habitats with assemblages of lower diversity elsewhere in the Indo-West Pacific region. While most Conus species preyed primarily on a different species or higher taxon of polychaetes, diets are not more specialized or dissimilar than in similar habitats elsewhere. Degree of specialization on different prey is not correlated with Conus species diversity in the different types of habitats studied. The data lead to the conclusion that differential predation is as important — and differential microhabitat utilization is more important — in permitting coexistence of potentially competing congeners, compared with conditions in habitats of comparable heterogeneity that support fewer congeners farther from the center of the Indo-West Pacific region. Pairwise comparisons of congeners indicate that many species pairs have low or no overlap in both microhabitat and food utilization. Members of species pairs with high overlap in microhabitat utilization typically eat different prey organisms, and those with similar diets typically occupy different habitats or microhabitats. This applies to molluscivorous as well as vermivorous species. Information on the diets of 11 species is reported here for the first time. Of 48 Indo-West Pacific Conus species whose food is now known, 35 prey on polychaetes, 2 on enteropneusts, 6 on gastropods, and 5 on fishes. Vermivorous Conus prey on relatively few of the polychaete species present in the environments. Species eaten represent only 12% of a total estimated polychaete population density of 27,000 individuals /m². Certain very abundant polychaetes may be protected from predation by Conus by their small size, others by their long tubes. Two new aspects of size-selective predation by Conus are reported: (1) Although comparisons of predation rate with prey standing-crop suggest that food is plentiful, selective predation on the largest prey individuals present suggests that only small proportions of prey-species populations may have large enough body size to repay foraging effort by the Conus present; (2) composition of the diet changes qualitatively with increase in body size in several vermivorous Conus species; shifting by larger individuals to larger prey species could be documented in C. ebraeus.     

The ecology of cirratulid mudballs on the Oman margin, northwest Arabian Sea

Mudball-building cirratulid polychaetes have been described previously only from the southern California margin. During a study of oxygen minimum-zone benthos in fall 1994, we observed dense aggregations of agglutinated mudballs at 840 to 875 m on the Oman margin in the northwest Arabian Sea. These were inhabited, and probably constructed, by a cirratulid polychaete species in the genus Monticellina. The mudballs were cigar-shaped, 4.5 to 25 mm long, and positioned vertically so as to protrude several millimeters above the sediment–water interface. Total mudball densities were ∼16 000 m⁻². Occupied mudballs occurred at densities of 2 112 m⁻²; 89% were in the uppermost 2 cm of sediment, and no occupied mudballs were found below 10 cm. Organisms other than the cirratulid were present on 1.7% of the mudballs examined, and included epizoic polychaetes, agglutinated and calcareous Foraminifera. Various polychaetes, a nemertean and nematodes were found inside tests. Mudball abundance exhibited positive associations with densities of several paraonid polychaete species, and with densities of burrowing and subsurface-deposit-feeding polychaetes. Negative associations were observed between mudballs and three tube-building taxa (two polychaetes and an amphipod). Mudball-inhabiting cirratulids are abundant in at least two low-oxygen, margin settings. We expect further sampling of bathyal environments to yield additional systems in which cirratulid mudballs are common. Such observations are valuable because mudballs appear to represent a significant source of heterogeneity that can influence macrofaunal community structure in deep-sea sediments. Received: 15 January 1997 / Accepted: 30 January 1997     

Nematode assemblages from <Emphasis Type="Italic">Avicennia</Emphasis><Emphasis Type="Italic">marina</Emphasis> leaf litter in a temperate mangrove forest in south-eastern Australia

Meiofauna from Avicennia marina leaf litter in a temperate mangrove forest was enumerated, and the nematode assemblages compared on the bases of leaf colour (used as a guide to leaf age) and shore horizon where samples were collected. Twenty-one putative nematode species were collected from 48 leaf litter samples. Univariate analyses indicated that neither the colour of the leaf nor the shore horizon significantly affected abundance of nematodes. However, of the four (2Ƕ) treatment groups, rarefaction curves revealed highest diversity on brown leaves from under the shade of the tree canopy (H'=0.751ǂ.126 SE, n=17). Species diversity of leaf litter nematodes was lower in this temperate mangrove system than reported from tropical mangrove studies. ANOSIM tests confirmed a significant effect of shore horizon on nematode assemblages. The dominant feeding group among nematodes was non-selective deposit feeders (7/21 species, but 77% of all nematodes). Epigrowth grazers were represented by 8/21 species of nematodes, but only 19% of the total number. Excised leaves became skeletonised by about 15 weeks. Shorter temporal scales of life cycles of nematodes compared with leaf degradation, and the dynamic nature of epibiontic assemblages, probably explain the similar assemblage structure on yellow and brown leaves.     

Population distribution and structure of the free-living nematodes of Long Island Sound

The distribution and structure of nematode populations in 4 sedimentary environments (muds, muddy sands, fine sands and medium-coarse sands) in Long Island Sound were studied. Mean population densities were highest in muds and muddy sands. Cluster analysis suggested the presence of two basic faunistic units; a mud unit characterized by high species dominance, low species diversity and low species endemism, and a sand unit characterized by low species dominance, high species diversity and high species endemism. Species diversity in all habitats was a direct function of both species richness and equitability. Limited niche separation among deposit feeders, usually the dominant nematode trophic type in muddy sediments, is proposed as the cause for the high species dominance so often characteristic of shallow marine muds. The study afforded the opportunity to examine the quantitative and qualitative aspects of population structure in relation to environmental impact (as indicated by large differences in the heavy metal and organic carbon concentrations within each of the 4 sedimentary regimes). Within each sediment type no differences in population densities, species composition or species diversity of nematodes existed between heavily impacted and apparently non-impacted sediments, or between Long Island Sound and similar coastal regions. These findings cast doubt on (1) the use of heavy metal and organic carbon concentrations as indicators of environmental stress for marine nematodes; (2) the use of diversity indices alone as indicators of environmental deterioration; and (3) the usefulness of field monitoring studies alone for the assessment of pollution impact on marine nematodes.Contribution no. 100 from the Institute of Marine and Atmospheric Sciences, City College of New YorkCommunicated by M.R. Tripp, Newark     

Distribution quantitative de la méiofaune dans l'aire d'épandage de l'égout de Marseille

A quantitative analysis of meiofauna was carried out at ten sample stations distributed along a transect off Marseilles' (France) sewage outfall in November, 1981. The meiofauna was counted and average and total biomass of nematodes and copepods were calculated for each station. Comparison of data between stations or groups of stations was made using statistical tests. The results revealed three sectors in which effects of pollution on meiofauna differed: (1) A heavily polluted coastal zone (at a distance of 30 to 150 m from the outfall), relatively poor in meiofauna, which, however, was not completely absent-as were macrobenthic organisms; the meiofauna was composed mainly of nematodes and copepods, but acarians and naupliar larvae (probably copepods) were also numerous; the copepods were uncommonly large in size, and alone consituted most of the total benthic biomass in this zone. (2) An intermediate zone (400 to 1 150 m away from the coast), also polluted and much richer in meiofauna than the coastal zone; the meiofauna groups were more diversified, annelids (mainly polychaetes) increasing in number, while acarians became scarce and copepods decreased in size; at 400 m away from the outfall, where the sediment is strongly polluted, the nematode population consisted of large individuals which contributed greatly to the biomass; at 400 and 800 m, the distribution of both meiofauna and macrobenthos was heterogeneous; at 1 150 m away from the outfall, maximal meiofaunal densities were recorded, due primarily to an increase in nematode numbers; here, unlike all the stations nearer to the coast, total nematode biomass was greater than copepod biomass. (3) An off-shore zone (1.8 to 4 km distant from the coast), slightly polluted, where meiofauna densities were reduced and individuals decreased in size with increasing depth. Generally, an enrichment in the meiofauna was evident from the coastal to the intermediate zone. Enrichments induced by urban pollution have been recorded previously, but not, as in the present study, at a distance of 1 km away from the outfall, succeeding to a highly impoverished coastal zone. Thus, by supplying organic matter and nutrients, Marseilles' sewage can enrich sediments, but only to a certain distance away from the outfall, where the deleterious effects of pollutants are attenuated.     

Species-specific effect of macrobenthic assemblages on meiobenthos and nematode community structure in shallow sandy sediments

Three functionally different macrofaunal species (the filter- and/or surface deposit-feeding polychaete Hediste diversicolor, and the suspension-feeding bivalves Mya arenaria and Cerastoderma glaucum) were introduced as single- and two-species treatments into microcosms containing sandy sediment with a natural meiofaunal community. H. diversicolor is a burrowing species building a system of galleries, C. glaucum lives actively near the sediment surface acting as a biodiffuser and M. arenaria buries deeply and leads a sessile lifestyle. It is shown that H. diversicolor extended the vertical distribution of meiofauna into deeper sediment layers compared to the control and non-Hediste treatments. The response of the nematode community varied significantly among treatments and was dependant on the macrobenthic species composition but not on the species number. Nematode assemblages in all treatments with the polychaete, both in monoculture and with either bivalve, differed significantly from those recorded in other treatments and were more similar than replicates within any other single treatment. H. diversicolor also appeared to have stimulated nematode species diversity. The present study demonstrated that the impact of macrobenthic assemblages on meiofauna is not a simple summation of individual species effects but is species specific.     

Harbours as marine habitats: hydroid assemblages on sea-walls compared with natural habitats

Sessile hydrozoans constitute a common component of marine rocky communities. We compared the hydrozoan assemblages occurring on sea-walls of commercial harbours with those on natural rocky cliffs along the southern Iberian Peninsula, to identify differences in the multivariate structure of the assemblages and species richness. Harbour hydroid assemblages significantly differed from natural ones mainly due to their qualitative composition. Medusa-less taxa, optimized for low dispersal and long-term persistence on the substratum, are barely represented in harbours, but abundant at natural sites. “Port species” assemblages were composed of (1) small, short-living species with typical opportunistic characteristics; (2) cosmopolitan large-size taxa, significantly represented both in harbours and in natural habitats; (3) non-indigenous species. Contrarily to the expected lower richness of communities in confined areas, our results demonstrate that richness of hydroid assemblages in harbours is comparable to that of natural habitats.     

Oxygen/sulfide regime and nematode fauna associated with Arenicola marina burrows: new insights in the thiobios case

Profiles of oxygen and sulfide around the burrows of the lugworm, Arenicola marina, from a North Sea tidal flat were examined with microelectrodes, and the steep gradients were related to the microdistribution of nematodes. Around the tail shaft free oxygen penetrated only 2 mm into the burrow wall, coinciding with a bright zone sharply limited by the ambient black sediment. Contrastingly, in normal bottoms of the tidal flat (controls) only the surface of the bright zone was supplied with free oxygen. Here, the dark colouration coincided with the presence of free hydrogen sulfide. Around the tail shaft the nearest free hydrogen sulfide was detected 6 mm from the burrow wall leaving several millimetres of black sediment without measurable free sulfide. We discuss how these divergencies may relate to the stability of the oxygen/sulfide gradients and the course of time involved in their formation. A total of 54 nematode species were identified. Based on non-metric Multidimensional Scaling Ordination, four nematode assemblages corresponded to four microhabitats of the A. marina burrow: the funnel, the feeding pocket, the tail shaft and the feacal cast. The tail shaft assemblage (oxic plus partly anoxic zones) was similar to that of the anoxic zone of the control sediment. It was dominated by the most abundant nematode in the present study, Metalinhomoeus biformis (mean abundance in tail shaft 202 indx10 cm^-3). Adults of common nematode species from sulfidic microhabitats had a significantly higher length/diameter ratio than those inhabiting the oxic zone of the control sediment (p<0.001). The chemical recordings and metric analysis indicate that these slender nematodes around the A. marina tail shaft and in the reduced horizons of the reference sites represent thiobiotic assemblages, as compared to the shorter and stouter oxybiotic species characterising the assemblages from the surface zone and (partly) the funnel.     

Establishment, persistence, and introgression of entomopathogenic nematodes in a forest ecosystem.

Entomopathogenic nematodes (EPN) are currently marketed worldwide for use in inundative biological control, where the applied natural enemy population (rather than its offspring) is expected to reduce insect numbers. Unlike classical biological control, in inundative control natural enemy establishment is not crucial in order to achieve pest suppression. Field trials in Irish forestry provided the opportunity to test predictions regarding the establishment of two exotic (Steinernema carpocapsae and Heterorhabditis megidis) and two indigenous (Steinernema feltiae and Heterorhabditis downesi) species. Nematodes were inundatively applied to pine stumps to control populations of pine weevil, Hylobius abietis, on three clearcut sites, and their persistence and spread monitored for up to five years. All species were recovered three years after application but only S. feltiae was recovered in years 4 and 5. Limited horizontal dispersal to 20 cm (but not 100 cm) was observed, but the majority of nematodes were recovered close to the area of application. Steinernema feltiae was also recovered from nearby stumps to which it had not been applied, indicating possible phoretic dispersal by weevils or other stump-associated fauna. EPN were not recovered from stumps outside the treated area, suggesting that such dispersal is quite localized. Two strains of S. feltiae (Irish and exotic) were applied. Amplified fragment length polymorphism (AFLP) analysis on 11 populations isolated from soil four years later showed that all had a much closer affinity to the applied Irish strain, suggesting persistence of this genotype and extinction of the exotic one. Some strains were clustered close together, and this is interpreted in the light of possible population genetic scenarios. The findings from the field study confirm predictions based on background knowledge of the species and demonstrate the importance of medium-term studies, as a 3-year study would have overestimated the risk of establishment of exotic species. Short-term persistence and spread of S. carpocapsae, S. feltiae, and H. downesi was also studied in pine forest mesocosms. Similar trends to field results, such as limited horizontal dispersal, even vertical distribution, and more abundant recovery of S. feltiae than of other species, point to the utility of mesocosm studies as a predictive tool.     

Impact of Arenicola marina (Polychaeta) on the microbial assemblages and meiobenthos in a marine intertidal flat

The benthic microbial food web can be responsible for a large proportion of benthic carbon cycling yet there are few data on the trophic interactions between this food web and macrobenthos. A large-scale field experiment was conducted to investigate effects of eliminating the polychaete Arenicola marina on benthic microbes (prokaryotes, heterotrophic and autotrophic protists) and metazoan meiofauna in a marine intertidal flat of the North Sea, Germany. Over a period of 2 years, quantity and composition of micro- and meiobenthos from unmanipulated sites were compared to those from sites deplete of lugworms. These grazer treatments were cross-classified with different sediment characteristics (low- and mid-intertidal areas). Lugworm removal resulted in an initial increase in abundance of prokaryotes and nanoflagellates, which became less pronounced in the second year. Ciliates were not affected quantitatively, but in the absence of lugworms, diversity and the proportion of carnivorous forms increased. Meiobenthos (nematodes, ostracods and copepods) were affected only moderately. The observed changes are probably due to a combination of release from grazing/predation pressure, changes in the species composition of higher trophic levels (namely large polychaetes) and altered environmental conditions (such as depth of the oxygenated layer and sediment grain size). Spatial differences between sites of different tidal exposure/grain size appeared to be as large as temporal differences during the 2 years following the manipulation of the system. We conclude that in intertidal sediments, indirect effects due to habitat transformation are as important as direct biological interactions (grazing pressure and competition) for the dynamics of the benthic microbial food web.     

Leaf epifauna of the seagrass Thalassia testudinum

The abundance, composition and trophic relationships of metazoan leaf epifauna of the marine angiosperm Thalassia testudinum König were studied in Barbados, West Indies. Approximately 90 species from 11 phyla consisted chiefly of nematodes, harpacticoid copepods, crustacean nauplii, ostracods, and turbellarians. Epiflora- and detritus-feeders dominated the epifauna. Increasing leaf epiphytism was accompanied by faunal changes, most notably increased nematode, harpacticoid and polychaete density. Faunal composition was very similar to that of the temperate seagrass analogue Zostera marina.     

Currents connecting communities: nearshore community similarity and ocean circulation

Understanding the mechanisms that create spatial heterogeneity in species distributions is fundamental to ecology. For nearshore marine systems, most species have a pelagic larval stage where dispersal is strongly influenced by patterns of ocean circulation. Concomitantly, nearshore habitats and the local environment are also influenced by ocean circulation. Because of the shared dependence on the seascape, distinguishing the relative importance of the local environment from regional patterns of dispersal for community structure remains a challenge. Here, we quantify the "oceanographic distance" and "oceanographic asymmetry" between nearshore sites using ocean circulation modeling results. These novel metrics quantify spatial separation based on realistic patterns of ocean circulation, and we explore their explanatory power for intertidal and subtidal community similarity in the Southern California Bight. We find that these metrics show significant correspondence with patterns of community similarity and that their combined explanatory power exceeds that of the thermal structure of the domain. Our approach identifies the unique influence of ocean circulation on community structure and provides evidence for oceanographically mediated dispersal limitation in nearshore marine communities.     

Effects of ocean acidification on invertebrate settlement at volcanic CO2 vents

We present the first study of the effects of ocean acidification on settlement of benthic invertebrates and microfauna. Artificial collectors were placed for 1 month along pH gradients at CO₂ vents off Ischia (Tyrrhenian Sea, Italy). Seventy-nine taxa were identified from six main taxonomic groups (foraminiferans, nematodes, polychaetes, molluscs, crustaceans and chaetognaths). Calcareous foraminiferans, serpulid polychaetes, gastropods and bivalves showed highly significant reductions in recruitment to the collectors as pCO₂ rose from normal (336–341 ppm, pH 8.09–8.15) to high levels (886–5,148 ppm) causing acidified conditions near the vents (pH 7.08–7.79). Only the syllid polychaete Syllis prolifera had higher abundances at the most acidified station, although a wide range of polychaetes and small crustaceans was able to settle and survive under these conditions. A few taxa (Amphiglena mediterranea, Leptochelia dubia, Caprella acanthifera) were particularly abundant at stations acidified by intermediate amounts of CO₂ (pH 7.41–7.99). These results show that increased levels of CO₂ can profoundly affect the settlement of a wide range of benthic organisms.     

Effect of Experimental Selective Logging on Tropical Butterflies

Abstract: I investigated the effects of an experimental selective logging regime on the assemblage of fruit-feeding butterflies in replicated experimental plots in the Chiquibul Forest, Belize. Over a 12-month period, I caught 1187 individuals of 49 species using fruit-baited traps. Selective logging at densities of six stems per ha 3 years before the study had little effect on butterfly species richness, the abundance of individual species, or the shape of species-abundance distributions. There was no tendency for taxa with restricted geographical ranges to be particularly sensitive to selective logging. Mark-release-recapture results suggest that most butterflies move relatively short distances, but that some dispersal occurs between plots separated by distances of ≥1 km. The apparent similarity of the fruit-feeding butterfly assemblage in selectively logged and unlogged forest contrasts with previous studies of butterfly assemblages but mirrors results for birds in the same plots. A possible explanation is the high frequency of natural disturbance—hurricanes and associated fires—in the Chiquibul Forest. The species present appear to be adapted to naturally disturbed habitats and may therefore be relatively unaffected by selective logging. Local studies of the effects of selective logging must take into account the history of natural and human disturbance in the study area. The results support the case for "ecological forestry," in which sustainable management regimes work within the limits imposed by natural disturbance.     

Biotic indexes reveal the impact of harbour enlargement on benthic fauna

Environmental effects of enlargement works in Puerto Calero (Lanzarote, Canary Islands) were analysed in the sediments using abiotic variables (total hydrocarbons, polyaromatic hydrocarbons, organic matter and granulometry) and three biotic indexes (AMBI, M-AMBI and BENTIX). A before–after/control–impact (BACI) design was developed with four sampling campaigns, before (November 2004), during (March and July 2005) and after (July 2006) works. Inner stations were characterised by high concentrations of pollutants (total hydrocarbons and polyaromatic hydrocarbons). A temporal trend (2004–2006) was observed in macrofaunal assemblage structure, and thus in AMBI, M-AMBI and BENTIX indexes. Macrobenthic assemblages also mirrored the pollution gradient, with bioindicator species in inner stations (the polychaete Pseudopolydora paucibranchiata and the mollusc Abra alba), sensitive species (the sipunculid Aspidosiphon muelleri, the crustacean Pariambus typicus and the polychaete Aponuphis bilineata) in outer stations and ubiquitous species (the polychaetes Aricidea assimilis and Armandia polyophthalma) in both stations (inner and outer).     

土壤线虫生态毒理学研究现状及展望

线虫是土壤中最为丰富的无脊椎动物,在土壤生态系统腐屑食物网中占有重要地位.由于线虫具有形态特殊、分离鉴定相对简单,以及对环境变化敏感等特点,现已被作为模式生物用于生态毒理学研究,为环境污染评价提供有价值的信息.论文系统阐述了土壤线虫在物种和群落水平的生态毒理学研究现状,指出了目前线虫毒理学研究存在的薄弱环节,并对今后的研究趋势进行了展望.     

Bioengineers and their associated fauna respond differently to the effects of biogeography and upwelling

Temperature and primary production (often linked to nutrient supply) are two of the few factors influencing species diversity and abundances across mesoscale gradients, while at smaller scales the habitat complexity offered by bioengineers is important. Previous studies have illustrated effects of upwelling and biogeography on intertidal bioengineers, but it is not known if these processes influence assemblages associated with those bioengineers in a similar way. We examined the habitat structure offered by two species of mussels and their associated fauna in five regions across 3000 km and three biogeographic provinces of the South African coast, replicating upwelling and non-upwelling areas within each region. Upwelling and region influenced the structure of mussel beds (the density and size of mussels). In contrast, upwelling did not influence mesoscale differences in composition, abundance, and numbers of species of crustaceans, mollusks, or polychaetes in mussel beds. Regardless of trophic level or mode of reproduction, mussel bed fauna were influenced only by region. Regional differences were strongly influenced by biogeography. The associated fauna was, however, also strongly correlated with the structure of the habitats created by mussels. Our results support the importance of upwelling to a critical ecosystem engineer, but show that these effects do not extend directly to the assemblages of associated fauna, which are more influenced by regional-scale effects and biogeography. We suggest that mesoscale patterns in the associated fauna of this bioengineered habitat are driven by the direct effects of biogeography, combined with the influence of biogeography and upwelling on mussel bed structure.