Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10

We studied the degradation of carbazole (CAR) and 2,3-dichlorodibenzo-p-dioxin (2,3-DCDD) in soils inoculated with carbazole- and dioxin-degrader Pseudomonas resinovorans strain CA10. By using Tn5-based transposon delivery systems, this bacterium was chromosomally marked with a tandem green fluorescent protein (gfp) gene. Real-time competitive PCR and direct counting using the (gfp) marker were employed to monitor the total number of carbazole 1,9a-dioxygenase gene (carAa) and survival of CA10 cells in the soil and soil slurry microcosms. Bioaugmentation studies indicated that the survival of the marked CA10 cells in soil microcosms was strongly influenced by pH and organic matter. While the number of the marked CA10 cells decreased rapidly in pH 6 with low organic matter, a high cell density was maintained in pH 7.3 with 2.5% organic matters up to 21 days after inoculation. In pH 7.3 soil, the period needed for complete degradation of CAR (100 microg kg(-1)) was markedly shortened from 21 to 7 days by the inoculation with the CA10 cells. Single inoculation of CA10 cells into the soil slurry system of 2,3-DCDD-contaminated soil enhanced the degradation of 2,3-DCDD from 25.0% to 37.0%. In this system, the population density of CA10 cells and the total number of carAa gene were maintained up to 14 days after inoculation. By repeated inoculation (every 2 days) with CA10 cells each at a density of 10(9) CFU g(-1) of soil, almost all of the 2,3-DCDD (1 microg kg(-1)) was degraded within 14 days. Results of these experiments suggest that P. resinovorans strain CA10 may be an important resource for bioremediation of CAR and chlorinated dibenzo-p-dioxin in contaminated soils.     

Characterization of hydrocarbon-degrading and biosurfactant-producing Pseudomonas sp. P-1 strain as a potential tool for bioremediation of petroleum-contaminated soil

The Pseudomonas sp. P-1 strain, isolated from heavily petroleum hydrocarbon-contaminated soil, was investigated for its capability to degrade hydrocarbons and produce a biosurfactant. The strain degraded crude oil, fractions A5 and P3 of crude oil, and hexadecane (27, 39, 27 and 13 % of hydrocarbons added to culture medium were degraded, respectively) but had no ability to degrade phenanthrene. Additionally, the presence of gene-encoding enzymes responsible for the degradation of alkanes and naphthalene in the genome of the P-1 strain was reported. Positive results of blood agar and methylene blue agar tests, as well as the presence of gene rhl, involved in the biosynthesis of rhamnolipid, confirmed the ability of P-1 for synthesis of glycolipid biosurfactant. ¹H and ¹³C nuclear magnetic resonance, Fourier transform infrared spectrum and mass spectrum analyses indicated that the extracted biosurfactant was affiliated with rhamnolipid. The results of this study indicate that the P-1 and/or biosurfactant produced by this strain have the potential to be used in bioremediation of hydrocarbon-contaminated soils.     

Correlations between PAH bioavailability,degrading bacteria,and soil characteristics during PAH biodegradation in five diffusely contaminated dissimilar soils

The natural biodegradation of seven polycyclic aromatic hydrocarbons (PAHs) by native microorganisms was studied in five soils from Normandy (France) from diffusely polluted areas, which can also pose a problem in terms of surfaces and amounts of contaminated soils. Bioavailability tests using cyclodextrin-based extractions were performed. The natural degradation of low molecular weight (LMW) PAHs was not strongly correlated to their bioavailability due to their sorption to geosorbents. Conversely, the very low degradation of high molecular weight (HMW) PAHs was partly correlated to their poor availability, due to their sorption on complexes of organic matter and kaolinites or smectites. A principal component analysis allowed us to distinguish between the respective degradation behaviors of LMW and HMW PAHs. LMW PAHs were degraded in less than 2–3 months and were strongly influenced by the relative percentage of phenanthrene-degrading bacteria over total bacteria in soils. HMW PAHs were not significantly degraded, not only because they were less bioavailable but also because of a lack of degrading microorganisms. Benzo[a]pyrene stood apart since it was partly degraded in acidic soils, probably because of a catabolic cooperation between bacteria and fungi.     

Characterization of bacterial diversity in an atrazine degrading enrichment culture and degradation of atrazine,cyanuric acid and biuret in industrial wastewater

An enrichment culture was used to study atrazine degradation in mineral salt medium (MSM) (T1), MSM+soil extract (1:1, v/v) (T2) and soil extract (T3). Results suggested that enrichment culture required soil extract to degrade atrazine, as after second sequential transfer only partial atrazine degradation was observed in T1 treatment while atrazine was completely degraded in T2 and T3 treatments even after fourth transfer. Culture independent polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) technique confirmed selective enrichment of genus Bacillus along with Pseudomonas and Burkholderia. Degradation of atrazine/metabolites in the industrial wastewater was studied at different initial concentrations of the contaminants [wastewater-water (v/v) ratio: T1, 1:9; T2, 2:8; T3, 3:7; T4, 5:5 and T5, undiluted effluent]. The initial concentrations of atrazine, cyanuric acid and biuret ranged between 5.32 and 53.92 µg mL^?1, 265.6 and 1805.2 µg mL^?1 and 1.85 and 16.12 µg mL^?1, respectively. The enrichment culture was able to completely degrade atrazine, cyanuric acid and biuret up to T4 treatment, while no appreciable degradation of contaminants was observed in the undiluted effluent (T5). Inability of enrichment culture to degrade atrazine/metabolites might be due to high concentrations of cyanuric acid. Therefore, a separate study on cyanuric acid degradation suggested: (i) no appreciable cyanuric acid degradation with accumulation of an unidentified metabolite in the medium where cyanuric acid was supplemented as the sole source of carbon and nitrogen; (ii) partial cyanuric acid degradation with accumulation of unidentified metabolite in the medium containing additional nitrogen source; and (iii) complete cyanuric acid degradation in the medium supplemented with an additional carbon source. This unidentified metabolite observed during cyanuric acid degradation and also detected in the enrichment culture inoculated wastewater samples, however, was degraded up to T4 treatments and was persistent in the T5 treatment. Probably, accumulation of this metabolite inhibited atrazine/cyanuric acid degradation by the enrichment culture in undiluted wastewater.     

纺锤芽孢杆菌(Bacillus fusiformis)降解萘的特性及动力学

在前期研究中发现,纺锤芽孢杆菌(Bacillus fusiformis,BFN)可以用于降解水溶液的萘,为了解其降解过程,发现BFN菌生长量随着溶液中的萘的含量增加而提高。其中,萘的含量分别是30、50、100和200 mg/L时,BFN的生物量OD600值分别为0.057、0.081、0.126和0.193;降解培养基溶液COD的去除率分别为59.4%、65.3%、69.2%和70.6%,说明BFN菌在生长的过程中利用萘作为碳源。同时,动力学拟合发现,对不同含量萘的降解过程都符合一级降解动力学方程,且BFN菌的生长过程满足逻辑斯蒂方程。扫描电镜图表明,BFN菌在萘的存在下生长得更好。紫外光谱显示波长为276 nm的萘的吸收峰在降解后下降很多。红外光谱数据则表明,降解液中有2组新的吸收峰出现:一组出现在2 878、2 930和2 968 cm-1处,说明在萘的降解过程中有新的羧酸类生成;另一组出现在3 438、3 667和3 731 cm-1处有新的酚类物质生成。     

Effect of introduced phthalate-degrading bacteria on the diversity of indigenous bacterial communities during di-(2-ethylhexyl) phthalate (DEHP) degradation in a soil microcosm

Four previously isolated di-butyl-phthalate (DBP) degraders were tested for their abilities to degrade di-(2-ethylhexyl) phthalate (DEHP). In aqueous medium supplemented with 100mg/l of DEHP, both isolate G1 and Rhodococcus rhodochrous G2 showed excellent degradative activity; in three days they were able to degrade more than 97% of the added DEHP. Rhodococcus rhodochrous G7 degraded 32.5% of the added DEHP and Corynebacterium nitrilophilus G11 showed the least amount of DEHP degradation. The addition of surfactant Brij 30 at 0.1x critical micelle concentration (2mg/l) significantly improved DEHP degradation by Rhodococcus rhodochrous G2 (more than 90% of the added DEHP was degraded within 24 hours), but slightly inhibited the degradation of DEHP by the isolate G1 and Rhodococcus rhodochrous G7. Based on the 16S rDNA sequence data, isolate G1 was identified as Gordonia polyisoprenivorans. Soil inhibited DEHP degradation by G. polyisoprenivorans G1; fourteen days after a second addition of DEHP, 11.5% of the total added DEHP (i.e., 243.4 microg/g soil) remained detectable. Changes in the bacterial community were monitored using denaturing gradient gel electrophoresis (DGGE) and respective dendrogram analysis. It is clear that DEHP and DEHP plus G. polyisoprenivorans G1 substantially affected the bacterial community structure in the soils. However, as the population of indigenous DEHP degraders increased in the DEPH-treated soil, its bacterial communities resembled those in the DEHP plus G. polyisoprenivorans G1-inoculated soil by Day 17.     

Role of cyanobacteria in the biodegradation of crude oil by a tropical cyanobacterial mat

Cyanobacterial mats are ubiquitous in tropical petroleum-polluted environments. They form a high biodiversity microbial consortium that contains efficient hydrocarbons degraders. A cyanobacterial mat collected from a petroleum-contaminated environment located in Indonesia was studied for its biodegradation potential. In the field, the natural mat was shown to degrade efficiently the crude oil present in the environment. This natural mat demonstrated also a strong activity of degradation on model crude oil under laboratory conditions. In axenic cultures, the monospecific cyanobacterium Phormidium animale that constitute the bulk of the biomass did not exhibit any degradative capacity on hydrocarbons in the range of C13-C35 carbon atom number either in autotrophic or heterotrophic conditions. It was concluded that this cyanobacterial strain living on a heavily contaminated site had no direct effect on biodegradation of crude oil, the degradation activity being exclusively achieved by the other microorganisms present in the microbial consortium of the mat.     

Efficacy of forming biofilms by <Emphasis Type="Italic">Pseudomonas migulae</Emphasis> AN-1 toward in situ bioremediation of aniline-contaminated aquifer by groundwater circulation wells

The formation and activity of aniline-degrading biofilms developed by the psychrotrophic Pseudomonas migulae AN-1 were studied for the in situ remediation of contaminated aquifer using in-well bioreactor of groundwater circulating wells (GCWs). Biofilms grown in mineral salt medium with aniline exhibited tolerance to high concentrations of aniline. In aniline degradation rate, AN-1 biofilms exhibited slight differences compared with planktonic cells. The effectiveness and bio-implication of AN-1 biofilms in GCWs were investigated to treat aniline-contaminated aquifer. The results demonstrate that AN-1 biofilms survived the GCWs treatment process with high aniline-degrading efficiency. This system provides a novel environmentally friendly technology for the in situ bioremediation of low-volatile contaminants.     

Bioremediation of tributyltin contaminated sediment: degradation enhancement and improvement of bioavailability to promote treatment processes

Bioremediation of tributyltin (TBT) contaminated sediment was studied and degradation enhancement and improvement of bioavailability were also investigated. In TBT spiked sediment, the half-life of TBT in the control sample, representing natural attenuation, was 578 d indicating its persistence. In the stimulated sample (pH 7.5, aeration and incubated at 28 °C), the half-life was significantly reduced to 11 d. Further stimulation by nutrient addition (succinate, glycerol and l-arginine) or inoculation with Enterobacter cloacae (∼10⁷ viable cells g⁻¹ of sediment) resulted in half-life reduction to 9 and 10 d, respectively. In non-spiked sediment, the indigenous microorganisms were able to degrade aged TBT, but the extended period of contamination decreased the degradation efficiency. To improve bioavailability, addition of surfactant, adjustment of salinity and sonication were studied. The highest percentage solubilisation of TBT in water was obtained by adjusting salinity to 20 psu, which increased the solubility of TBT from 13% to 33%. Half-lives after bioavailability was improved were 5, 4 and 4 d for stimulation, stimulation w/nutrient addition and stimulation w/inoculation, respectively. However, natural attenuation in the control sample was not enhanced. The results show that providing suitable conditions is important in enhancing TBT biodegradation, and bioavailability improvement additionally increased the rate and degraded amount of TBT. Unfortunately, nutrient addition and inoculation of the degrader did not enhance the degradation appreciably.     

Co-metabolic degradation of naphthalene and pyrene by acclimated strain and competitive inhibition kinetics

A dominant strain named Ochrobactrum sp. was isolated from soils contaminated with coal tar. The batch experiments were carried out to study the co-metabolic degradation of pyrene by Ochrobactrum MB-2 with naphthalene as the main substrate and the effects of several significant parameters such as naphthalene concentration, pH and temperature on removal efficiency were explored. The results showed that Ochrobactrum MB-2 effectively degraded naphthalene and that the addition of naphthalene favored the degradation of pyrene. The maximum elimination efficiency of naphthalene (10?mg?L^?1) and pyrene (1?mg?L^?1) was achieved at pH 7 and 25?°C, and the corresponding values were 99 and 41%, respectively. A competitive inhibition model based on the Michaelis–Menten equation was used to characterize the inhibitory effect of pyrene on naphthalene degradation. The values of the half-saturation coefficient for naphthalene (K_S) and dissociation constant of enzyme-inhibitor complex (K_C) were determined to be 4.93 and 1.38?mg?L^?1, respectively.     

Inoculation of an atrazine-degrading strain,Chelatobacter heintzii Cit1, in four different soils: effects of different inoculum densities

The possibility to improve atrazine degradation in soils by bioaugmentation was studied. The atrazine-mineralizing strain, Chelatobacter heintzii Cit1, was inoculated in four sterile and four non-sterile soils, at varying inoculum densities. Two soils, which had shown enhanced atrazine mineralization, were used to determine which inoculum density was capable of restoring their original mineralizing capacity after sterilization. The two other soils, with intermediate and low capacity to mineralize atrazine, were used in order to demonstrate that atrazine mineralization in such soils could be improved by inoculation. Mineralization kinetics were fitted using the Gompertz model. In the case of soils adapted to atrazine mineralization, inoculation of C. heintzii did not accelerate the rate of atrazine mineralization, which was essentially performed by the indigenous microflora. However, with soils that did not mineralize atrazine, the introduction of 10(4) cfug(-1) resulted in a 3-fold increase of atrazine mineralization capacity.     

Degradation and detoxification of acetochlor in soils treated by organic and thiosulfate amendments

This work investigated the degradation and detoxification of acetochlor in a soil amended with an organic fertilizer or sodium thiosulfate (STS). Over an incubation period of 28 d, the residual acetochlor was measured, soil dehydrogenase activity was determined, and major degradates were identified. Results show that high-concentration acetochlor was persistent in the soil, as indicated by the depression in soil dehydrogenase activity. When the soil was amended with the organic fertilizer, the soil dehydrogenase activity was stimulated by supplemented nutrients, which resulted in a higher degradation of acetochlor. While STS did not significantly stimulate the soil dehydrogenase activity, acetochlor degraded more rapidly in STS-amended soil than in organic-amended soil. The Wright-Hobbie plots show that the influence of initial acetochlor concentration on degradation was dependent on the amendments. While the organic amendment resulted in the same degradate of acetochlor ethanesulfonic acid as in unamended soil, the STS amendment produced dechlorinated acetochlor thiosulfonic acid. The degradation of acetochlor in organic- and STS-amended soils thus occurred via different mechanisms. Further tests show that both degradates were less toxic to green algae than acetochlor. Both organic and STS amendments thus effectively degrade and detoxify acetochlor in soils.     

Investigation of evaporation and biodegradation of fuel spills in Antarctica. I. A chemical approach using GC-FID

Little effort has been devoted to differentiating between hydrocarbon losses through evaporation and biodegradation in treatability studies of fuel-contaminated Antarctic soils. When natural attenuation is being considered as a treatment option, it is important to be able to identify the mechanism of hydrocarbon loss and demonstrate that rates of degradation are sufficient to prevent off-site migration. Similarly, where complex thermally enhanced bioremediation schemes involve nutrient addition, water management, air stripping and active heating, it is important to appreciate the relative roles of these mechanisms for cost minimisation. Following the loss of hydrocarbons by documenting changes in total petroleum hydrocarbons offers little insight into the relative contribution of evaporation and biodegradation. We present a methodology here that allows identification and quantification of evaporative losses of diesel range organics at a range of temperatures using successively less volatile compounds as fractionation markers. We also present data that supports the general utility of so-called biodegradation indices for tracking biodegradation progress. We are also able to show that at 4 degrees C indigenous Antarctic soil bacteria degrade Special Antarctic Blend fuel components in the following order: naphthalene and methyl-napthalenes, light n-alkanes, then progressively heavier n-alkanes; whereas isoprenoids and the unresolved complex mixture are relatively recalcitrant.     

Biodegradation of potential diesel oxygenate additives: dibutyl maleate (DBM), and tripropylene glycol methyl ether (TGME)

The addition of oxygen-bearing compounds to diesel fuel considerably reduces particulate emissions. TGME and DBM have been identified as possible diesel additives based on their physicochemical characteristics and performance in engine tests. Although these compounds will reduce particulate emissions, their potential environmental impacts are unknown. As a means of characterizing their persistence in environmental media such as soil and groundwater, we conducted a series of biodegradation tests of DBM and TGME. Benzene and methyl tertiary butyl ether (MTBE) were also tested as reference compounds. Primary degradation of DBM fully occurred within 3 days, while TGME presented a lag phase of approximately 8 days and was not completely degraded by day 28. Benzene primary degradation occurred completely by day 3 and MTBE did not degrade at all. The total mineralized fractions of DBM and TGME achieved constant values as a function of time of approximately 65% and approximately 40%, respectively. Transport predictions show that, released to the environment, DBM and TGME would concentrate mostly in soils and waters with minimal impact to air. From an environmental standpoint, these results combined with the transport predictions indicate that DBM is a better choice than TGME as a diesel additive.     

Fate and degradation of triasulfuron in soil and water under laboratory conditions

The behavior and fate of triasulfuron (TRS) in water and soil systems were examined in laboratory studies. The degradation of TRS in both buffer solution and soil was highly pH-sensitive. The rate of degradation could be described with a pseudo first-order kinetic and was much faster at pH 4 than at pH 7 and 9. Aqueous hydrolysis occurred by cleavage of the sulfonylurea bridge to form 2-(2-chloroethoxy) benzenesulfonamide (CBSA) and [(4-methoxy-6-methyl-1,3,5-triazin-2-yl)amino] (AMMT). AMMT was unstable in aqueous solutions in any pH condition but it degraded more quickly at pH 4 and 9. CBSA did not degrade in aqueous solutions or in enriched cultures but it underwent a quick degradation in the soil. The rates of TRS degradation in sterile and non-sterile soils were similar, suggesting that microorganisms played a minimal role in the breakdown process. This hypothesis is supported by the results of studies on the degradation of TRS by enriched cultures during which the molecule underwent a prevalently chemical degradation.     

Fate and degradation of triasulfuron in soil and water under laboratory conditions

The behavior and fate of triasulfuron (TRS) in water and soil systems were examined in laboratory studies. The degradation of TRS in both buffer solution and soil was highly pH-sensitive. The rate of degradation could be described with a pseudo first-order kinetic and was much faster at pH 4 than at pH 7 and 9. Aqueous hydrolysis occurred by cleavage of the sulfonylurea bridge to form 2-(2-chloroethoxy) benzenesulfonamide (CBSA) and [(4-methoxy-6-methyl-1,3,5-triazin-2-yl)amino] (AMMT). AMMT was unstable in aqueous solutions in any pH condition but it degraded more quickly at pH 4 and 9. CBSA did not degrade in aqueous solutions or in enriched cultures but it underwent a quick degradation in the soil. The rates of TRS degradation in sterile and non-sterile soils were similar, suggesting that microorganisms played a minimal role in the breakdown process. This hypothesis is supported by the results of studies on the degradation of TRS by enriched cultures during which the molecule underwent a prevalently chemical degradation.     

Removal of Microcystins by Phototrophic Biofilms. A Microcosm Study (6 pp)

Background, Aims and Scope Microcystins (MCs) are a family of natural toxins produced by cyanobacteria (blue-green algae). As a result of eutrophication, massive cyanobacterial blooms occur more frequently and MCs represent important contaminants of freshwater ecosystems. Bacterial biodegradation is considered a main mechanism for MC breakdown in environmental conditions. While existing studies were mostly focused on MC biodegradation by planktonic bacteria, our experiments examined the fate and kinetics of MC degradation in river-originated phototrophic biofilms and investigated factors influencing the rate of MC removal. Methods The fate of dissolved MCs was studied in laboratory microcosms with different composition (containing water only, water with phytoplankton and/or phototrophic biofilms). Biofilms originated from river ecosystem were pre-incubated under various conditions (with/without presence of cyanobacterial biomass or model organic substrates: glucose and protein - casein). Changes in MC concentration (0-14 days) in water columns were measured by HPLC DAD after external additions of purified MCs (160 μg L-1, MC-LR and MC YR), and halftimes (t1/2) of MC removal were estimated. Results and Discussion The slow degradation of MC was revealed in tap water (t1/2 ~ 14 days) and river water without cyanobacteria (t1/2 ~ 8 days). Enhanced removal occurred in the presence of natural planktonic cyanobacteria (t1/2 ~ 44 h), most probably due to microorganisms associated with the biomass of cyanobacterial bloom. More rapid MC elimination occurred in the variants containing phototrophic biofilms, and was particularly pronounced at those biofilms pre-cultivated in the presence of cyanobacterial blooms (t1/2 ~ 20 h). Much slower removal was observed in the variants simulating possible substrate-dependent induction of microorganism metabolism (biofilms pre-incubated with glucose: t1/2 ~ 35 h, and casein: t1/2 ~ 80 h). After termination of experiments, total amounts of MCs accumulated in the biofilms were below 5% of the initial toxin level revealing significant biodegradation processes. Conclusion The microcosm studies contributed to understanding of the environmental fate of MCs and revealed a rapid biodegradation by phototrophic biofilms. The rate of MC elimination depends on history of biofilm community, previous contact with cyanobacteria seems to be a selective factor improving the biodegradation potential. Recommendation and Outlook Our results experimentally showed a positive role of biofilms in MC elimination during water treatment processes such as bank filtration or slow sand filtration, and could eventually serve for further research of biofilm-based technological applications for MCs removal in small-scale drinking water treatment facilities.     

Photo-Induced OH reactions of naphthalene and its oxidation products on SiO2

The photo-induced degradation of naphthalene, 1,4-naphthoquinone, 1-naphthol and 1-NO₂ naphthalene, adsorbed on silica gel, and with the addition of nitrogenous air pollutants e.g. NO₂ (as KNO₂) was investigated. Results indicate that compounds adsorbed onto a solid carrier are degraded when irradiated with UV light (λ > 290 nm) in the presence of nitrites. The key species initiating the naphthalene degradation is the OH-radical which is generated through the photolysis of NO₂. Reaction products identified were 2-formyl-cinnamaldehyde, 1,4-naphthoquinone, nitronaphthol, o-phthaldialdehyde, phthalide and nitronaphthalene. A mass balance between 40–50% was achieved. Under the same irradiation conditions, 1-NO₂ naphthalene is mainly degraded by direct photolysis while degradation of 1-naphthol and 1,4-naphthoquinone proceeds via the reaction with OH-radicals. Identified products were hydroxy-nitro-nitroso- and quinones compounds.     

Toxicity to medaka of solutions of fenitrothion degraded by strong alkali

Various experiments were conducted to examine the effects of degradation products on organisms. Fenitrothion (MEP) emulsions adjusted to pH 10 or 14 were degraded by exposure to natural sunlight in winter with heat. Medaka eggs were exposed to various concentrations of the degraded solutions and an untreated MEP emulsion for 5 days starting 4-5 h following fertilisation. The eggs were then allowed to develop in dechlorinated tap water until the fish reached 3 months of age. The hatching rate and rate of survival in the degraded solutions tended to be lower than those in the untreated MEP emulsion, and the incidence of abnormal fry in the degraded solutions was higher than that of the untreated MEP emulsion. It thus appears that degradation products formed by MEP have toxic effects on medaka.     

Application of a luminescence-based biosensor for assessing naphthalene biodegradation in soils from a manufactured gas plant

Despite numerous reviews suggesting that microbial biosensors could be used in many environmental applications, in reality they have failed to be used for which they were designed. In part this is because most of these sensors perform in an aqueous phase and a buffered medium, which is in contrast to the nature of genuine environmental systems. In this study, a range of non-exhaustive extraction techniques (NEETs) were assessed for (i) compatibility with a naphthalene responsive biosensor and (ii) correlation with naphthalene biodegradation. The NEETs removed a portion of the total soil naphthalene in the order of methanol > HPCD > βCD > water. To place the biosensor performance to NEETs in context, a biodegradation experiment was carried out using historically contaminated soils. By coupling the HPCD extraction with the biosensor, it was possible to assess the fraction of the naphthalene capable of undergoing microbial degradation in soil.