WATERSHED URBANIZATION AND CHANGES IN FISH COMMUNITIES IN SOUTHEASTERN WISCONSIN STREAMS1

ABSTRACT: We compared watershed land‐use and fish community data between the 1970s and 1990s in 47 small streams in southeastern Wisconsin. Our goal was to quantify effects of increasing urbanization on stream fishes in what had been a predominantly agricultural region. In the 43 test watersheds, mean surface coverage by agricultural lands decreased from 54 percent to 43 percent and urban lands increased from 24 percent to 31 percent between 1970 and 1990. Agriculture dominated the four reference watersheds, but neither agriculture (65–59 percent) nor urban (4.4–4.8 percent) land‐uses changed significantly in those watersheds during the study period. From the 1970s to the 1990s the mean number of fish species for the test stream sites decreased 15 percent, fish density decreased 41 percent, and the index of biotic integrity (IBI) score dropped 32 percent. Fish community attributes at the four reference sites did not change significantly during the same period, although density was substantially lower in the 1990s. For both the 1970s and 1990s test sites, numbers of fish species and IBI scores were positively correlated with watershed percent agricultural land coverage and negatively correlated with watershed urban land uses, as indexed by percent effective connected imperviousness. Numbers of fish species per site and IBI scores were highly variable below 10 percent imperviousness, but consistently low above 10 percent. Sites that had less than 10 percent imperviousness and fewer than 10 fish species in the 1970s suffered the greatest relative increase in imperviousness and decline in species number over the study period. Our findings are consistent with previous studies that have found strong negative effects of urban land uses on stream ecosystems and a threshold of environmental damage at about 10 percent imperviousness. We conclude that although agricultural land uses often degrade stream fish communities, agricultural land impacts are generally less severe than those from urbanization on a per‐unit‐area basis.     

Relative Importance of Water‐Quality Stressors in Predicting Fish Community Responses in Midwestern Streams

Fish, habitat, and water chemistry data were collected from 98 streams in the midwestern United States, an area dominated by intense cultivation of row crops, in order to identify important water‐quality stressors to fish communities. We focused on 10 stressors including riparian disturbance, riparian vegetative cover, instream fish cover, streambed sedimentation, streamflow variability, total nitrogen, total phosphorus, minimum dissolved oxygen, pesticides, and bed sediment contaminants. Fish community response variables included a measure of observed/expected taxonomic completeness; species‐specific tolerances to nitrogen, phosphorus, dissolved oxygen, and water temperature; the percent of species classified as macrohabitat generalists; and an index of pesticide toxicity to fish. Multivariate analysis indicated that total nitrogen was the most important stressor, signifying that fish communities were responding to total nitrogen despite relatively high levels common to an agricultural setting. Individually, fish taxonomic completeness decreased with increasing streambed sedimentation, whereas fish community tolerance to total phosphorus increased with increasing streambed sedimentation, riparian disturbance, and total nitrogen. These findings underscore the importance of multiple biological response metrics to better understand the effects of water‐quality stressors on fish communities and highlight the complex relations between total phosphorus and fish communities.     

The Capacity to Detect Change Stream Fish Communities Characteristics at the Site-Level in the Lake Ontario Basin

We investigate natural inter-annual variability of fish community measures within streams of the Lake Ontario basin. Given this variability, we examined coefficients of variation (CV) among the community measures and three scenarios pertaining to the capacity of biologists to detect changes in the fish community at the stream site level. Results indicate that Ontario's stream fish communities are highly variable in time. Young-of-the-year rainbow trout growth was the least variable whereas biomass density scored the highest CV of 0.50 among streams (range 0.22-0.99). Given the CVs and relatively equal sample sizes, our measures of the fish community can be ranked from least to most powerful: biomass, density, richness, diversity, and growth of young-of-the-year rainbow trout. Only large changes in measures can typically be detected. For instance, it would take 4-6 years of monitoring before and after a pulse perturbation to detect a 50 % change in species richness or diversity. We suggest that monitoring abundance is unlikely to result in the detection of small impacts within a short period of time and that large effects can be masked by low statistical power. This evidence voices the need for more research into better sampling methods, experimental designs, and choice of indicators to support monitoring programs for flowing waters.     

ACIDIFICATION AND FISH OCCURRENCE IN THE UPPER CHEAT RWER DRAINAGE,WEST VIRGINIA1

ABSTRACT: The decline of many fish populations within the mid-Appalachian region has been attributed to stream acidification as a result of acid precipitation. Many previous attempts to examine relationships between fish occurrence and acidification have been hindered by a lack of data on water quality and fish distributions. To assess relationships between water quality and bedrock type in the upper Cheat River drainage, we used EPA STORET water quality data (1969–1993) and calculated mean pH and mean alkalinity of streams associated with four bedrock types (Hampshire, Chemung, Mauch Chunk, and Pottsville). We examined the relationship between fish occurrence and bedrock type for 53 headwater streams. We found that acidity in headwater streams associated with Pottsville and Mauch Chunk groups often exceeded biological thresholds for acid-sensitive fish species (pH < 5.5). Streams associated with the Pottsville group typically had fewer cyprinid species and fewer total species than those associated with Mauch Chunk, Chemung, and Hampshire bedrock types. The congruent occurrence of streams with low buffering capacity, streams with pH > 5.5, and streams with low fish species richness indicate that acidification has influenced fish distributions in the upper Cheat River drainage.     

EFFECTS OF WATERSHED BEST MANAGEMENT PRACTICES ON HABITAT AND FISH IN WISCONSIN STREAMS1

ABSTRACT: We evaluated the effectiveness of watershed‐scale implementations of best‐management practices (BMPs) for improving habitat and fish attributes in two coldwater stream systems in Wisconsin. We sampled physical habitat, water temperature, and fish communities in multiple paired treatment and reference streams before and after upland (barnyard runoff controls, manure storage, contour plowing, reduced tillage) and riparian (stream bank fencing, sloping, limited rip‐rapping) BMP installation in the treatment subwatersheds. In Spring Creek, BMPs significantly improved overall stream habitat quality, bank stability, instream cover for fish, abundance of cool‐ and coldwater fishes, and abundance of all fishes. Improvements were most pronounced at sites with riparian BMPs. Water temperatures were consistently cold enough to support coldwater fishes such as trout (Salmonidae) and sculpins (Cottidae) even before BMP installation. We observed the first‐time occurrence of naturally reproduced brown trout (Salmo trutta) in Spring Creek, indicating that the stream condition had been improved to be able to partially sustain a trout population. In Eagle Creek and its tributary Joos Creek, limited riparian BMPs led to localized gains in overall habitat quality, bank stability, and water depth. However, because few upland BMPs were installed in the subwatershed there were no improvements in water temperature or the quality of the fish community. Temperatures remained marginal for coldwater fish throughout the study. Our results demonstrate that riparian BMPs can improve habitat conditions in Wisconsin streams, but cannot restore coldwater fish communities if there is insufficient upland BMP implementation. Our approach of studying multiple paired treatment and reference streams before and after BMP implementation proved effective in detecting the response of stream ecosystems to watershed management activities.     

Relations of fish community composition to environmental variables in streams of central Nebraska,USA

Nine sites on streams in the Platte River Basin in central Nebraska were sampled as part of the US Geological Survey's National Water-Quality Assessment Program during 1993–1994. A combination of canonical correspondence analysis and an index of biotic integrity determined from fish community data produced complementary evaluations of water-quality conditions. Results of the canonical correspondence analysis were useful in showing which environmental variables were significant in differentiating fish communities at the nine sites. Five environmental variables were statistically significant in the analysis. Median specific conductance of water samples collected at a site accounted for the largest amount of variability in the species data. Although the percentage of the basin as cropland was not the first variable chosen in a forward selection process, it was the most strongly correlated with the first ordination axis. A rangeland-dominated site was distinguished from all others along that axis. Median orthophosphate concentration of samples collected in the year up to the time of fish sampling was most strongly correlated with the second ordination axis. The index of biotic integrity produced results that could be interpreted in terms of the relative water quality between sites. Sites draining nearly 100% cropland had the lowest scores for two individual metrics of the index of biotic integrity that were related to species tolerance. Effective monitoring of water quality could be achieved by coupling methods that address both the ecological components of fish communities and their statistical relationships to environmental factors.     

Population control of exotic rainbow trout in streams of a natural area park

Expansion of the distribution of exotic rainbow trout is thought to be a leading cause for the decline of native brook trout since the 1930s in Great Smoky Mountains National Park, USA. An experimental rehabilitation project was conducted from 1976 to 1981 using backpack electrofish shockers on four remnant brook trout populations sympatric with rainbow trout. The objectives were to evaluate the effectiveness of the technique to remove the exotic rainbow trout, to determine the population responses by native brook trout, and to evaluate the usefulness of the technique for trout management in the park.Rainbow trout populations were greatly reduced in density after up to six years of electrofishing, but were not eradicated. Rainbow trout recruitment, however, was essentially eliminated. Brook trout populations responded by increasing in density (including young-of-the-year), but rates of recovery differed among streams. The maximum observed densities ir each stream occurred at the end of the project.The findings suggest that electrofishing had a major negative impact on the exotic species, which was followed by positive responses from the native species in the second and third order study streams. The technique would probably be less effective in larger (fourth-order) park streams, but as an eradication tool the technique may have its highest potential in small first order streams. Nonetheless, the technique appears useful for population control without causing undue impacts on native aquatic species, although it is labor intensive, and capture efficiency is greatly influenced by fish size and stream morphology. To completely remove the exotic fish from selected streams, different technologies will have to be explored and developed.     

Modeling the Relations Between Flow Regime Components,Species Traits,and Spawning Success of Fishes in Warmwater Streams

Modifications to stream hydrologic regimes can have a profound influence on the dynamics of their fish populations. Using hierarchical linear models, we examined the relations between flow regime and young-of-year fish density using fish sampling and discharge data from three different warmwater streams in Illinois, Alabama, and Georgia. We used an information theoretic approach to evaluate the relative support for models describing hypothesized influences of five flow regime components representing: short-term high and low flows; short-term flow stability; and long-term mean flows and flow stability on fish reproductive success during fish spawning and rearing periods. We also evaluated the influence of ten fish species traits on fish reproductive success. Species traits included spawning duration, reproductive strategy, egg incubation rate, swimming locomotion morphology, general habitat preference, and food habits. Model selection results indicated that young-of-year fish density was positively related to short-term high flows during the spawning period and negatively related to flow variability during the rearing period. However, the effect of the flow regime components varied substantially among species, but was related to species traits. The effect of short-term high flows on the reproductive success was lower for species that broadcast their eggs during spawning. Species with cruiser swimming locomotion morphologies (e.g., Micropterus) also were more vulnerable to variable flows during the rearing period. Our models provide insight into the conditions and timing of flows that influence the reproductive success of warmwater stream fishes and may guide decisions related to stream regulation and management.     

Can Warmwater Streams Be Rehabilitated Using Watershed-Scale Standard Erosion Control Measures Alone?

Degradation of warmwater streams in agricultural landscapes is a pervasive problem, and reports of restoration effectiveness based on monitoring data are rare. Described is the outcome of rehabilitation of two deeply incised, unstable sand-and-gravel-bed streams. Channel networks of both watersheds were treated using standard erosion control measures, and aquatic habitats within 1-km-long reaches of each stream were further treated by addition of instream structures and planting woody vegetation on banks (“habitat rehabilitation”). Fish and their habitats were sampled semiannually during 1–2 years before rehabilitation, 3–4 years after rehabilitation, and 10–11 years after rehabilitation. Reaches with only erosion control measures located upstream from the habitat measure reaches and in similar streams in adjacent watersheds were sampled concurrently. Sediment concentrations declined steeply throughout both watersheds, with means ≥40% lower during the post-rehabilitation period than before. Physical effects of habitat rehabilitation were persistent through time, with pool habitat availability much higher in rehabilitated reaches than elsewhere. Fish community structure responded with major shifts in relative species abundance: as pool habitats increased after rehabilitation, small-bodied generalists and opportunists declined as certain piscivores and larger-bodied species such as centrarchids and catostomids increased. Reaches without habitat rehabilitation were significantly shallower, and fish populations there were similar to the rehabilitated reaches prior to treatment. These findings are applicable to incised, warmwater streams draining agricultural watersheds similar to those we studied. Rehabilitation of warmwater stream ecosystems is possible with current knowledge, but a major shift in stream corridor management strategies will be needed to reverse ongoing degradation trends. Apparently, conventional channel erosion controls without instream habitat measures are ineffective tools for ecosystem restoration in incised, warmwater streams of the Southeastern U.S., even if applied at the watershed scale and accompanied by significant reductions in suspended sediment concentration.     

Assessing Water Quality at Large Geographic Scales: Relations Among Land Use,Water Physicochemistry,Riparian Condition,and Fish Community Structure

Data collected from 172 sites in 20 major river basins between 1993 and 1995 as part of the US Geological Survey's National Water-Quality Assessment Program were analyzed to assess relations among basinwide land use (agriculture, forest, urban, range), water physicochemistry, riparian condition, and fish community structure. A multimetric approach was used to develop regionally referenced indices of fish community and riparian condition. Across large geographic areas, decreased riparian condition was associated with water-quality constituents indicative of nonpoint source inputs—total nitrogen and suspended sediment and basinwide urban land use. Decreased fish community condition was associated with increases in total dissolved solids and rangeland use and decreases in riparian condition and agricultural land use. Fish community condition was relatively high even in areas where agricultural land use was relatively high (>50% of the basin). Although agricultural land use can have deleterious effects on fish communities, the results of this study suggest that other factors also may be important, including practices that regulate the delivery of nutrients, suspended sediments, and total dissolved solids into streams. Across large geographic scales, measures of water physicochemistry may be better indicators of fish community condition than basinwide land use. Whereas numerous studies have indicated that riparian restorations are successful in specific cases, this analysis suggests the universal importance of riparian zones to the maintenance and restoration of diverse fish communities in streams.     

A Method and Rationale for Deriving Nutrient Criteria for Small Rivers and Streams in Ohio

A mechanistic understanding of the effects of nutrient enrichment in lotic systems has been advanced over the last two decades such that identification of management thresholds for the prevention of eutrophication is now possible. This study describes relationships among primary nutrients (phosphorus and nitrogen), benthic chlorophyll a concentrations, daily dissolved oxygen (DO) concentrations, and the condition of macroinvertebrate and fish communities in small rivers and streams in Ohio, USA. Clear associations between nutrients, secondary response indicators (i.e., benthic chlorophyll and DO), and biological condition were found, and change points between the various indicators were identified for use in water quality criteria for nutrients in small rivers and streams (<1300 km²). A change point in benthic chlorophyll a density was detected at an inorganic nitrogen concentration of 0.435 mg/l (±0.599 SD), and a total phosphorus (TP) concentration of 0.038 mg/l (±0.085 SD). Daily variation in DO concentration was significantly related to benthic chlorophyll concentration and canopy cover, and a change point in 24-h DO concentration range was detected at a benthic chlorophyll level of 182 mg/m². The condition of macroinvertebrate communities was related to benthic chlorophyll concentration and both minimum and 24-h range of DO concentration. The condition of fish communities was best explained by habitat quality. The thresholds found in relationships between the stressor and the response variables, when interpreted in light of the uncertainty surrounding individual change points, may now serve as a framework for nutrient criteria in water quality standards.     

Fish Assemblage Responses to Forest Cover

We investigated whether fish assemblage structure in southern Appalachian streams differed with historical and contemporary forest cover. We compared fish assemblages in 2^nd–4^th order streams draining watersheds that had increased forest cover between 1950 and 1993 (i.e., reforesting watersheds). We sampled fish in 50 m reaches during August 2001 and calculated catch-per-unit-effort (CPUE) by taxonomic, distributional, trophic, reproductive, and thermal metrics. We assigned streams to reforestation categories based on cluster analysis of years 1950 and 1993 near-stream forest cover. The relationship between forest cover and assemblage structure was assessed using analysis of variance to identify differences in fish CPUE in five forest cover categories. Streams contained 23 fish species representing six families, and taxa richness ranged from 1 to 13 at 30 stream sites. Streams with relatively low near-stream forest cover were different from streams having moderate to high near-stream forest cover in 1950 and 1993. Fish assemblages in streams having the lowest amount of forest cover (53–75%) were characterized by higher cosmopolitan, brood hider, detritivore/herbivore, intermediate habitat breadths, run-pool dweller, and warm water tolerant fish CPUE compared to streams with higher riparian forest cover. Our results suggest that fish assemblage’s structural and functional diversity and/or richness may be lower in streams having lower recent or past riparian forest cover compared to assemblages in streams having a high degree of near-stream forest cover.     

INFLUENCES OF WATERSHED,RIPARIAN‐CORRIDOR,AND REACH‐SCALE CHARACTERISTICS ON AQUATIC BIOTA IN AGRICULTURAL WATERSHEDS1

ABSTRACT: Multivariate analyses and correlations revealed strong relations between watershed and riparian‐corridor land cover, and reach‐scale habitat versus fish and macroinvertebrate assemblages in 38 warmwater streams in eastern Wisconsin. Watersheds were dominated by agricultural use, and ranged in size from 9 to 71 km² Watershed land cover was summarized from satellite‐derived data for the area outside a 30‐m buffer. Riparian land cover was interpreted from digital orthophotos within 10‐, 10‐to 20‐, and 20‐to 30‐m buffers. Reach‐scale habitat, fish, and macroinvertebrates were collected in 1998 and biotic indices calculated. Correlations between land cover, habitat, and stream‐quality indicators revealed significant relations at the watershed, riparian‐corridor, and reach scales. At the watershed scale, fish diversity, intolerant fish and EPT species increased, and Hilsenhoff biotic index (HBI) decreased as percent forest increased. At the riparian‐corridor scale, EPT species decreased and HBI increased as riparian vegetation became more fragmented. For the reach, EPT species decreased with embeddedness. Multivariate analyses further indicated that riparian (percent agriculture, grassland, urban and forest, and fragmentation of vegetation), watershed (percent forest) and reach‐scale characteristics (embeddedness) were the most important variables influencing fish (IBI, density, diversity, number, and percent tolerant and insectivorous species) and macroinvertebrate (HBI and EPT) communities.     

THE RELATIONSHIP OF WATER QUALITY AND FISH OCCURRENCE TO SOILS AND GEOLOGY IN AN AREA OF HIGH HYDROGEN AND SULFATE ION DEPOSITION1

ABSTRACT: A survey of 61 headwater streams and their watersheds on Pennsylvania's Laurel Hill, an area of high hydrogen ion and sulfate deposition, was conducted in May and June 1983. Trout were absent from 12 or 20 percent of the streams. No fish were present in 10 streams. Thirty-three streams appeared to contain viable trout populations, 10 streams had other interferring cultural impacts and 6 streams had nonviable trout populations. Significant differences in water quality were noted among streams with and without fish. The streams having no fish as a group had significantly lower pH and alkalinity and higher dissolved aluminum than those with fish. Attempts were made to correlate soil type and geology with the presence or absence of trout. Watersheds with a major percentage of very stony land soil classifications always contained no trout or were culturally impacted. On the other hand, watersheds with a major percentage of Upshur (limestone derived) soils always supported trout. Watersheds with more than 30 percent Pocono Group bedrock supported trout in every case but two, while in every case but one, watersheds with more than 30 percent Pottsville Group bedrock did not support trout. Acid runoff episode data indicate severe transient acidification attributable to atmospheric deposition. It appears that a combination of very stony land, 30 percent Pottsville Group bedrock and high deposition of hydrogen ions and sulfate may result in transient acidification and absence of fish populations from headwater streams on Pennsylvania's Laurel Hill.     

Recovery of Fish Communities in a Warm Water Stream Following Pollution Abatement

The long-term recovery process for fish communities in a warm water stream in East Tennessee was studied using quantitative measurements over 20 years. The stream receives effluents from a U. S. Department of Energy (DOE) facility, but since 1985 these effluents have been greatly reduced, eliminated, or diluted as part of a substantial long-term pollution abatement program. The resulting changes in water quantity and quality led to a recovery of the fish communities, evidenced by significant changes in species richness, abundance (density and biomass), and community composition (e.g., number of fish species sensitive to stress). The fish community changes occurred over a spatial gradient (downstream from the headwater release zone nearest the DOE facility) and temporally, at multiple sampling locations in the stream. Changes in measured parameters were associated with specific remedial actions and the intervening steps within the recovery process are discussed with regard to changes in treatment processes.     

RELATION BETWEEN FISH COMMUNITIES AND RIPARIAN ZONE CONDITIONS AT TWO SPATIAL SCALES1

ABSTRACT: The relation offish community composition to riparian cover at two spatial scales was compared at 18 streams in the agricultural Minnesota River Basin. The two spatial scales were: (1) local riparian zone (a 200 meter wide buffer extending 2 to 3 kilometers upstream of the sampling reach); and (2) the upstream riparian zone (a 200 m wide buffer on the mainstem and all perennial tributaries upstream of the sampling reach). Analysis of variance indicated that streams with wooded‐local riparian zones had greater fish species richness (means = 20 and 15, respectively) and Index of Biotic Integrity (IBI) scores (means = 40 and 26, respectively) than streams with open‐local riparian zones. Streams with wooded‐upstream riparian zones tended (were not statistically significant) to have greater numbers of species (means = 19 and 15, respectively) and IBI scores (means = 33 and 28, respectively) than streams with open‐upstream riparian zones. There was no significant interaction between the riparian zone conditions at the two scales. This study suggests that maintenance of wooded riparian cover along streams could be effective in maintaining or improving fish community composition in streams draining heavily agricultural areas.     

Habitat Improvements and Fish Community Response Associated with an Agricultural Two‐Stage Ditch in Mower County,Minnesota

Water quality and stream habitat in agricultural watersheds are under greater scrutiny as hydrologic pathways are altered to increase crop production. Ditches have been traditionally constructed to remove water from agricultural lands. Little attention has been placed on alternative ditch designs that are more stable and provide greater habitat diversity for wildlife and aquatic species. In 2009, 1.89 km of a conventional drainage ditch in Mower County, Minnesota, was converted to a two‐stage ditch (TSD) with small, adjacent floodplains to mimic a natural system. Cross section surveys, conducted pre‐ and post‐construction, generally indicate a stable channel with minor adjustments over time. Vegetation surveys showed differences in species composition and biomass between the slopes and the benches, with changes ongoing. Longitudinal surveys demonstrated a 12‐fold increase in depth variability. Fish habitat quality improved with well‐sorted gravel riffles and deeper pool habitat. The biological response to improved habitat quality was investigated using a Fish Index of Biological Integrity (FIBI). Our results show higher FIBI scores post‐construction with scores more similar to natural streams. In summary, the TSD demonstrated improvements in riparian and instream habitat quality and fish communities, which showed greater fish species richness, higher percentages of gravel spawning fish, and better FIBI scores. This type of management tool could benefit ditches in other regions where gradient and geology allow.     

Impacts of Urbanization on Stream Habitat and Fish Across Multiple Spatial Scales

We analyzed the relation of the amount and spatial pattern of land cover with stream fish communities, in-stream habitat, and baseflow in 47 small southeastern Wisconsin, USA, watersheds encompassing a gradient of predominantly agricultural to predominantly urban land uses. The amount of connected impervious surface in the watershed was the best measure of urbanization for predicting fish density, species richness, diversity, and index of biotic integrity (IBI) score; bank erosion; and base flow. However, connected imperviousness was not significantly correlated with overall habitat quality for fish. Nonlinear models were developed using quantile regression to predict the maximum possible number of fish species, IBI score, and base flow for a given level of imperviousness. At watershed connected imperviousness levels less than about 8%, all three variables could have high values, whereas at connected imperviousness levels greater than 12% their values were inevitably low. Connected imperviousness levels between 8 and 12% represented a threshold region where minor changes in urbanization could result in major changes in stream condition. In a spatial analysis, connected imperviousness within a 50-m buffer along the stream or within a 1.6-km radius upstream of the sampling site had more influence on stream fish and base flow than did comparable amounts of imperviousness further away. Our results suggest that urban development that minimizes amount of connected impervious surface and establishes undeveloped buffer areas along streams should have less impact than conventional types of development.     

Assessing Influences of Hydrology,Physicochemistry, and Habitat on Stream Fish Assemblages Across a Changing Landscape1

Abstract: We evaluated the impact of land cover on fish assemblages by examining relationships between stream hydrology, physicochemistry, and instream habitat and their association with fish responses in streams draining 18 watersheds of the Lower Piedmont of western Georgia. Several important relationships between land use and physicochemical, hydrological, and habitat parameters were observed, particularly higher frequency of spate flows, water temperatures, and lower dissolved oxygen (DO) with percentage impervious surface (IS) cover, higher habitat quality with percentage forest cover, and elevated suspended solid concentrations with percentage pasture cover. Fish assemblages were largely explained by physicochemical and hydrological rather than habitat variables. Specifically, fish species diversity, richness, and biotic integrity were lower in streams that received high frequency of spate flows. Also, overall fish assemblage structure as determined by nonmetric multidimensional scaling was best described by total dissolved solids (TDS) and DO, with high TDS and low DO streams containing sunfish‐based assemblages and low TDS and high DO streams containing minnow‐based assemblages. Our results suggest that altered hydrological and physicochemical conditions, induced largely by IS, may be a strong determinant of fish assemblage structure in these lowland streams and allow for a more mechanistic understanding of how land use ultimately affects these systems.