Indoor airborne fungal pollution in newborn units in Turkey

Pathogenic and/or opportunistic fungal species are major causes of nosocomial infections, especially in controlled environments where immunocompromised patients are hospitalized. Indoor fungal contamination in hospital air is associated with a wide range of adverse health effects. Regular determination of fungal spore counts in controlled hospital environments may help reduce the risk of fungal infections. Because infants have inchoate immune systems, they are given immunocompromised patient status. The aim of the present study was to evaluate culturable airborne fungi in the air of hospital newborn units in the Thrace, Marmara, Aegean, and Central Anatolia regions of Turkey. A total of 108 air samples were collected seasonally from newborn units in July 2012, October 2012, January 2013, and April 2013 by using an air sampler and dichloran 18% glycerol agar (DG18) as isolation media. We obtained 2593 fungal colonies comprising 370 fungal isolates representing 109 species of 28 genera, which were identified through multi-loci gene sequencing. Penicillium, Aspergillus, Cladosporium, Talaromyces, and Alternaria were the most abundant genera identified (35.14, 25.40, 17.57, 2.70, and 6.22% of the total, respectively).     

Organismic-level acute toxicology profiling of reactive azo dyes

In the present study, organismic-level acute toxicology profile of three reactive azo dyes, viz. Reactive Blue 221, Reactive Red 195, and Reactive Yellow 145, was investigated, by using bacterial (Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae, Staphylococcus aureus, Listeria monocytogenes, and Bacillus subtilis), fungal (Trichoderma asperellum, Aspergillus flavus, Fusarium fujikuroi, and Rhizoctonia solani), plant (Raphanus sativus, Triticum aestivum, Sorghum bicolor, and Phaseolus mungo), and aquatic (Artemia salina and Daphnia magna) specimens. Microbial test organisms (all the six bacteria and two fungi, i.e., T. asperellum and A. flavus) and D. magna were found to be relatively more sensitive towards the reactive azo dyes and their mixture, as the EC50 values were in the range of 80–330, 135–360, and 108–242 ppm for bacteria, fungi, and D. magna, respectively (but the effect was not acutely toxic). Moreover, the effect of dye mixture was comparable tothe individual dyes in almost all the tested microbial specimens. For plant seeds, the dye mixture was found to be relatively more inhibitory towards T. aestivum and R. sativus than the individual dyes. For S. bicolor and P. mungo seeds, the effect of the dye mixture was almost identical to the individual dyes. However, in all cases, EC50 values were in the range of 950–3500 ppm, which indicates a non-toxic effect on plant seed germination potential. Likewise, the dyes and their mixture were not acutely toxic for Artemia salina larvae (more sensitive to the dye mixture) and Daphnia magna neonates (EC50, 516–950 and 108–242 ppm, respectively).     

Evaluation of disinfectants in order to eliminate fungal contamination in computer keyboards of an integrated health center in Piauí, Brazil

This quantitative and qualitative study aimed to evaluate the level of fungal contamination in computer keyboards from an Integrated Health Center (IHC) at Piauí, Brazil, and to evaluate the efficacy of 50% sodium bicarbonate and 50% alcoholic vinegar solutions to eliminate these microorganisms. Ten keyboards from six sectors of the IHC were chosen randomly, and the collection was performed in three situations: (i) before of disinfection, (ii) after disinfection with solution of sodium bicarbonate, and (iii) after disinfection with solution of alcoholic vinegar. Samples were inoculated in Petri dishes with dextrose agar potato plus chloramphenicol and incubated at room temperature for 72 h. All keyboards were contaminated with opportunistic fungi, with Cladosporium cladosporioides (29.4%) being the most frequent species, followed by Curvularia lunata (17.6%) and Aspergillus niger, Alternaria alternata, and Curvularia clavata with 11.8% each. The two solutions were proven to be efficient in eliminating fungal contamination; however, the sodium bicarbonate solution caused esthetic damages in keyboards. In addition, this study is the first report of the antifungal activity of alcoholic vinegar in filamentous fungi. Based on our findings, we suggest a daily disinfection of keyboards with a 50% vinegar solution plus adequate hygiene from the hands of professionals before and after the use of the computer and its annexes, as key actions to reduce nosocomial infections, particularly in economically disadvantaged countries.     

Experimental arid land afforestation in Central Anatolia,Turkey

The afforestation of arid lands faces many challenges, and perhaps the most important key for success is choosing one or more species that are adapted well for local environmental conditions. We explored species that would be suitable for the steppe region of Central Anatolia. Intensive site preparation included ripping the subsoil (to 80 cm) and plowing the upper soil before planting seedlings of Elaeagnus angustifolia, Robinia pseudoacacia, Fraxinus angustifolia, and Pinus nigra were used as tree species. We also tested the success of several shrub species: Amygdalus orientalis, Calligonum polygonoides, and Spartium junceum. After five growing seasons, E. angustifolia showed the highest survival, with 80% of planted seedlings remaining. For the shrubs, A. orientalis was the most successful species with a 95% survival rate. Broad-leaved trees grew a cumulative average of 34 cm in height in 5 years, whereas P. nigra seedings grew only 9 cm. The greatest height growth occurred in the shrubs, with A. orientalis gaining 40 cm in height in 5 years. Overall, E. angustifolia and A. orientalis appeared best suited for afforestation in these areas. R. pseodoacacia and F. angustifolia may also be used as alternative species.     

Assessment of physicochemical parameters and prevalence of virulent and multiple-antibiotic-resistant <Emphasis Type="Italic">Escherichia coli</Emphasis> in treated effluent of two wastewater treatment plants and receiving aquatic <Emphasis Type="Italic">milieu</Emphasis> in Durban,South Africa

The poor operational status of some wastewater treatment plants often result in the discharge of inadequately treated effluent into receiving surface waters. This is of significant public health concern as there are many informal settlement dwellers (ISDs) that rely on these surface waters for their domestic use. This study investigated the treatment efficiency of two independent wastewater treatment plants (WWTPs) in Durban, South Africa and determined the impact of treated effluent discharge on the physicochemical and microbial quality of the receiving water bodies over a 6-month period. Presumptive Escherichia coli isolates were identified using biochemical tests and detection of the mdh gene via PCR. Six major virulence genes namely eae, hly, fliC, stx1, stx2, and rfbE were also detected via PCR while antibiotic resistance profiles of the isolates were determined using Kirby-Bauer disc diffusion assay. The physicochemical parameters of the wastewater samples ranged variously between 9 and 313.33 mg/L, 1.52 and 76.43 NTUs, and 6.30 and 7.87 for COD, turbidity, and pH respectively, while the E. coli counts ranged between 0 and 31.2?×?10³ CFU/ml. Of the 200 selected E. coli isolates, the hly gene was found in 28 %, fliC in 20 %, stx2 in 17 %, eae in 14 %, with stx1 and rfbE in only 4 % of the isolates. Notable resistance was observed toward trimethoprim (97 %), tetracycline (56 %), and ampicillin (52.5 %). These results further highlight the poor operational status of these WWTPs and outline the need for improved water quality monitoring and enforcement of stringent guidelines.     

Estimation of underwater visibility in coastal and inland waters using remote sensing data

An optical method is developed to estimate water transparency (or underwater visibility) in terms of Secchi depth (Z _sd ), which follows the remote sensing and contrast transmittance theory. The major factors governing the variation in Z _sd , namely, turbidity and length attenuation coefficient (1/(c + K _d ), c = beam attenuation coefficient; K _d  = diffuse attenuation coefficient at 531 nm), are obtained based on band rationing techniques. It was found that the band ratio of remote sensing reflectance (expressed as (R _rs (443) + R _rs (490))/(R _rs (555) + R _rs (670)) contains essential information about the water column optical properties and thereby positively correlates to turbidity. The beam attenuation coefficient (c) at 531 nm is obtained by a linear relationship with turbidity. To derive the vertical diffuse attenuation coefficient (K _d ) at 531 nm, K _d (490) is estimated as a function of reflectance ratio (R _rs (670)/R _rs (490)), which provides the bio-optical link between chlorophyll concentration and K _d (531). The present algorithm was applied to MODIS-Aqua images, and the results were evaluated by matchup comparisons between the remotely estimated Z _sd and in situ Z _sd in coastal waters off Point Calimere and its adjoining regions on the southeast coast of India. The results showed the pattern of increasing Z _sd from shallow turbid waters to deep clear waters. The statistical evaluation of the results showed that the percent mean relative error between the MODIS-Aqua-derived Z _sd and in situ Z _sd values was within ±25%. A close agreement achieved in spatial contours of MODIS-Aqua-derived Z _sd and in situ Z _sd for the month of January 2014 and August 2013 promises the model capability to yield accurate estimates of Z _sd in coastal, estuarine, and inland waters. The spatial contours have been included to provide the best data visualization of the measured, modeled (in situ), and satellite-derived Z _sd products. The modeled and satellite-derived Z _sd values were compared with measurement data which yielded RMSE = 0.079, MRE = ?0.016, and R ²  = 0.95 for the modeled Z _sd and RMSE = 0.075, MRE = 0.020, and R ²  = 0.95 for the satellite-derived Z _sd products.     

Characterisation of the airborne pollen spectrum in Guadalajara (central Spain) and estimation of the potential allergy risk

Aerobiological research into airborne pollen diversity and seasonal variations in pollen counts has become increasingly important over recent decades due to the growing incidence of asthma, rhinitis and other pollen-related allergic conditions. Airborne pollen in Guadalajara (Castilla-La Mancha, Spain) was studied over a 6-year period (2008–2013) using a Hirst-type volumetric spore trap. The highest pollen concentrations were recorded from February to June, coinciding with the pollen season of the pollen types that most contribute to the local airborne pollen spectrum: Cupressaceae (32.2 %), Quercus (15.1 %), Platanus (13.2 %), Olea (8.3 %), Populus (7.8 %) and Poaceae (7.2 %). These are therefore critical months for allergy sufferers. The pollen calendar was typically Mediterranean and comprised 25 pollen types. Between January and March, Cupressaceae pollen concentrations exceeded allergy risk thresholds on 38 days. Other woody species such as Olea and Platanus have a shorter pollen season, and airborne concentrations exceeded allergy risk thresholds on around 13 days in each case. Poaceae pollen concentrations attained allergy risk levels on 26 days between May and July. Other highly allergenic pollen types included Urticaceae and Chenopodiaceae-Amaranthaceae, though these are less abundant than other pollen types in Guadalajara and did not exceed risk thresholds on more than 3 and 5 days, respectively.     

Identification and analysis of polyaromatic hydrocarbons (PAHs)—biodegrading bacterial strains from refinery soil of India

Polyaromatic hydrocarbons (PAHs) utilizing bacteria were isolated from soils of seven sites of Mathura refinery, India. Twenty-six bacterial strains with different morphotypes were isolated. These strains were acclimatized to utilize a mixture of four polycyclic aromatic hydrocarbons, i.e., anthracene, fluorene, phenanthrene, and pyrene, each at 50 mg/L concentration as sole carbon source. Out of total isolates, 15 potent isolates were subjected to 16S rDNA sequencing and identified as a member of diverse genera, i.e., Bacillus, Acinetobacter, Stenotrophomonas, Alcaligenes, Lysinibacillus, Brevibacterium, Serratia, and Streptomyces. Consortium of four promising isolates (Acinetobacter, Brevibacterium, Serratia, and Streptomyces) were also investigated for bioremediation of PAH mixture. This consortium was proved to be efficient PAH degrader resulting in 40–70 % degradation of PAH within 7 days. Results of this study indicated that these genera may play an active role in bioremediation of PAHs.     

Relative proportions of <Emphasis Type="Italic">E. coli</Emphasis> and <Emphasis Type="Italic">Enterococcus spp.</Emphasis> may be a good indicator of potential health risks associated with the use of roof harvested rainwater stored in tanks

A total of 285 water samples were collected from 71 roof harvested rainwater tanks from four villages in different provinces over a two-year (2013–2014) period during the early (October to December) and late (January to March) rainy season. Water quality was evaluated based on Escherichia coli, faecal coliforms and Enterococcus spp. prevalence using the IDEXX Quanti-Tray quantification system. Real-Time PCR was used to analyse a subset of 168 samples for the presence of Shigella spp., Salmonella spp. and E. coli virulence genes (stx1, stx2 and eaeA). Escherichia coli were detected in 44.1% of the samples, Enterococcus spp. in 57.9% and faecal coliforms in 95.7%. The most prevalent E. coli concentrations in harvested rainwater were observed in 29.1% of samples and 22.5% for Enterococcus spp. and, were within 1–10 cfu/100 ml and 10–100 cfu/100 ml, respectively, whereas those for faecal coliforms (36.6%) were within 100–1000 cfu/100 ml. On average 16.8% of the samples had neither E. coli nor Enterococcus spp. detected, while 33.9% had only Enterococcus spp. and 23.7% had only E. coli. E. coli and Enterococcus spp. were detected together in 25.5% of the samples. Evaluation of samples for potential pathogenic bacteria showed all tested samples to be negative for the Shigella spp. ipaH gene, while five tested positive for Salmonella ipaB gene. None of the samples tested positive for the stx1 and stx2 genes, and only two tested positive for the eaeA gene. These findings are potentially useful in the development of a simplified risk assessment strategy based on the concentrations of indicator bacteria.     

Bioindicator responses and performance of plant species along a vehicular pollution gradient in western Himalaya

Loss of green cover, and increasing pollution is a prime global concern. The problem calls for screening of pollution-tolerant tree species that can be integrated into plantation drives. Recognizing this, the study analyzed bio-indicator responses and performance of commonly occurring plant species along a pollution gradient in western Himalaya. Based on distance from the road, three sites viz., highly polluted (HP), moderately polluted (MP), and least polluted (LP), were identified. From these sites, leaves of commonly occurring 26 tree species were collected and analyzed for dust accumulation, total chlorophyll, relative water content (RWC), ascorbic acid, and pH using standard protocols. Later, assessment of Air Pollution Tolerance Index (APTI) and Anticipated Performance Indices (API) was carried out. The results revealed variations in biochemical characteristics. The pH, RWC, and total chlorophyll increased with decreasing pollution while ascorbic acid increased with increasing pollution. Dust capturing potential of Ficus carica (1.191 mg/m²) and Toona ciliata (0.820 mg/m²) was relatively higher. Based on the results of APTI, Grevillea robusta was classified as tolerant. It scored significantly higher values (21.06, 21.19, and 19.61 in LP, MP, and HP sites, respectively). Quercus floribunda, G. robusta (68.75% each), Juglans regia (68.7%), and T. ciliata (62.50%) were good performers in HP sites. Acer caesium, Betula utilis, and Morus alba that had low API scores (43.75%) were predicted as poor performers. Thus, G. robusta, Q. floribunda, J. regia, T. ciliata, and F. carica were evaluated as best performers. They could be integrated into plantations drives for environmental management.     

Microphytobenthic biomass,species composition and environmental gradients in the mangrove intertidal region of the Andaman Archipelago,India

Monthly sampling in mangrove intertidal sediments of Andaman Archipelago was carried out during a 1-year study (January to December, 2013) in order to analyse the spatial and temporal distribution of microphytobenthos (MPB) and MPB biomass (sediment chlorophyll-a (chl-a)) in the surficial layer 0–1 cm. The MPB community was mainly composed of diatoms. The MPB biomass concentration in surface sediment (0–1 cm) ranged from 0.7 to 16.98 μg cm^?3. Population density of benthic diatoms varied from 78 to 224 ind cm^?3. This study identified 41 diatom taxa (27 pennate diatoms, 14 centric diatoms) in the sediment, and among all the diatom taxa, we distinguished few true planktonic species—Coscinodiscus centralis, Coscinodiscus marginatus, Leptocylindricus danicus, Planktoniella sol, Thalassiosira decipiens, Thalassionema nitzschioides and Thalassiothrix longissima. Overall, a high percentage of diatoms were pennate (81%) as opposed to centric. Based on benthic diatom abundance, species composition and distribution, MPB assemblages of sampling stations were grouped into two distinct clusters: one with St. 1 and St. 3 and another one with St. 2 and St. 4. Canonical correspondence analysis (CCA) revealed seasonality as the most important factor determining variability in diatom species composition among sampling sites. There was a distinct seasonal pattern in MPB biomass distribution and benthic diatom cell density during monsoon and post-monsoon seasons. Our results suggest that among various physical and chemical variables studied, greater levels of overlying water nutrients and sediment textures significantly correlated and were conducive factors for MPB. This is the first detailed study on the MPB from these mangrove sediments, providing benchmark data for future studies about these remote groups of Andaman and Nicobar Islands.     

<Emphasis Type="Italic">Synechococcus</Emphasis> production and grazing loss rates in nearshore tropical waters

Temporal variation of Synechococcus, its production (μ) and grazing loss (g) rates were studied for 2 years at nearshore stations, i.e. Port Dickson and Port Klang along the Straits of Malacca. Synechococcus abundance at Port Dickson (0.3–2.3 × 10⁵ cell ml^?1) was always higher than at Port Klang (0.3–7.1 × 10⁴ cell ml^?1) (p < 0.001). μ ranged up to 0.98 day^?1 (0.51 ± 0.29 day^?1), while g ranged from 0.02 to 0.31 day^?1 (0.15 ± 0.07 day^?1) at Port Klang. At Port Dickson, μ and g averaged 0.47 ± 0.13 day^?1 (0.29–0.82 day^?1) and 0.31 ± 0.14 day^?1 (0.13–0.63 day^?1), respectively. Synechococcus abundance did not correlate with temperature (p > 0.25), but nutrient and light availability were important factors for their distribution. The relationship was modelled as log Synechococcus = 0.37Secchi ? 0.01DIN + 4.52 where light availability (as Secchi disc depth) was a more important determinant. From a two-factorial experiment, nutrients were not significant for Synechococcus growth as in situ nutrient concentrations exceeded the threshold for saturated growth. However, light availability was important and elevated Synechococcus growth rates especially at Port Dickson (F = 5.94, p < 0.05). As for grazing loss rates, they were independent of either nutrients or light intensity (p > 0.30). In nearshore tropical waters, an estimated 69 % of Synechococcus production could be grazed.     

Seasonal variations and source profile of <Emphasis Type="Italic">n</Emphasis>-alkanes in particulate matter (PM<Subscript>10</Subscript>) at a heavy traffic site,Delhi

Delhi is one of the most polluted cities in the world. The generation of aerosols in the lower atmosphere of the city is mainly due to a large amount of natural dust advection and sizable anthropogenic activities. The compositions of organic compounds in aerosols are highly variable in this region and need to be investigated thoroughly. Twenty-four-hour sampling to assess concentrations of n-alkanes (ng/m³) in PM₁₀ was carried out during January 2015 to June 2015 at Indira Gandhi Delhi Technical University for Women (IGDTUW) Campus, Delhi, India. The total average concentration of n-alkanes, 243.7 ± 5.5 ng/m³, along with the diagnostic tools has been calculated. The values of CPI₁, CPI₂, and CPI₃ for the whole range of n-alkanes series, petrogenic n-alkanes, and biogenic n-alkanes were 1.00, 1.02, and 1.04, respectively, and C _max were at C₂₅ and C₂₇. Diagnostic indices and curves indicated that the dominant inputs of n-alkanes are from petrogenic emissions, with lower contribution from biogenic emissions. Significant seasonal variations were observed in average concentrations of n-alkanes, which is comparatively higher in winter (187.4 ± 4.3 ng/m³) than during the summer season (56.3 ± 1.1 ng/m³).     

Diversity of crude oil-degrading bacteria and alkane hydroxylase (<Emphasis Type="Italic">alkB</Emphasis>) genes from the Qinghai-Tibet Plateau

The aim of this study was to survey the response of the microbial community to crude oil and the diversity of alkane hydroxylase (alkB) genes in soil samples from the Qinghai-Tibet Plateau (QTP). The enrichment cultures and clone libraries were used. Finally, 53 isolates and 94 alkB sequences were obtained from 10 pristine soil samples after enrichment at 10 °C with crude oil as sole carbon source. The isolates fell into the phyla Proteobacteria, Actinobacteria, and Bacteroidetes, with the dominance of Pseudomonas and Acinetobacter. The composition of degraders was different from polar habitats where Acinetobacter sp. is not a predominant responder of alkane degradative microbial communities. Phylogenetic analysis showed that the alkB genes from isolates and enrichment communities formed eight clusters and mainly related with alkB genes of Pseudomonas, Rhodococcus, and Acinetobacter. The alkB gene diversity in the QTP was lower than marine environments and polar soil samples. In particular, a total of 10 isolates exhibiting vigorous growth with crude oil could detect no crude oil degradation-related gene sequences, such as alkB, P450, almA, ndoB, and xylE genes. The Shannon-Wiener index of the alkB clone libraries from the QTP ranged from 1.00 to 2.24 which is similar with polar pristine soil samples but lower than that of contaminated soils. These results indicated that the Pseudomonas, Acinetobacter, and Rhodococcus genera are the candidate for in situ bioremediation, and the environment of QTP may be still relatively uncontaminated by crude oil.     

Impact of mining and forest regeneration on small mammal biodiversity in the Western Region of Ghana

Much of the terrestrial biodiversity in sub-Saharan Africa is supported by tropical rainforest. Natural resource development, particularly surface mining in the rainforest, poses great risks to the region’s rich and endemic biodiversity. Here, we assessed the impact of surface mining and the success of forest rehabilitation on small mammal diversity in the Western Region of Ghana. We surveyed small mammals in the project area and two adjoining forest reserves (control sites) before the mining operation and 10 years after mine closure and forest rehabilitation (topsoil replacement and revegetation). The forest reserves recorded higher species abundance than the mining areas. Majority of the species captured in the forest reserves, including Hylomyscus alleni, Praomys tullbergi, Malacomys cansdalei, and Hybomys trivirgatus, are forest obligate species. Only one individual each of H. alleni and P. tullbergi was captured in the naturally regenerated areas (core areas of mining activities that were allowed to revegetate naturally), while 32 individuals belonging to four species (Lophuromys sikapusi, Mus musculoides, Mastomys erythroleucus, and Crocidura olivieri) were recorded in the rehabilitated areas. Our data suggested negative effects of mining on small mammal diversity and the restoration of species diversity and important ecological processes after rehabilitation of altered habitats. We strongly encourage deliberate conservation efforts, particularly the development of management plans that require the restoration of degraded land resulting from mining activities.     

<Emphasis Type="Italic">Noctiluca</Emphasis> and copepods grazing on the phytoplankton community in a nutrient-enriched coastal environment along the southwest coast of India

The relative grazing impact of Noctiluca scintillans (hereafter referred only Noctiluca) and copepods (Acrocalanus gracilis, Paracalanus parvus, Acartia danae and Oithona similis) on the phytoplankton community in an upwelling–mudbank environment along the southwest coast India is presented here. This study was carried out during the Pre-Southwest Monsoon (April–May) to the Late Southwest Monsoon (August) period in 2014. During the sampling period, large hydrographical transformation was evident in the study area (off Alappuzha, Southwest coast of India); warmer Pre-Southwest Monsoon water column condition got transformed into cooler and nitrate-rich hypoxic waters during the Southwest Monsoon (June–August) due to intense coastal upwelling. Copepods were present in the study area throughout the sampling period with a noticeable increase in their abundance during the Southwest Monsoon. On the other hand, the first appearance of Noctiluca in the sampling location was during the Early Southwest Monsoon (mid-June) and thereafter their abundance increased towards the Peak Southwest Monsoon. The grazing experiments carried out as per the food removal method showed noticeable differences in the feeding preferences of Noctiluca and copepods, especially on the different size fractions of phytoplankton. Noctiluca showed the highest positive electivity for the phytoplankton micro-fraction (av. 0.49 ± 0.04), followed by nano-fraction (av. 0.17 ± 0.04) and a negative electivity for the pico-fraction (av. ?0.66 ± 0.06). In total ingestion of Noctiluca, micro-fraction contribution (83.7%) was significantly higher compared to the nano- (15.7%) and pico-fractions (0.58%). On the other hand, copepods showed the highest positive electivity for the phytoplankton nano-fraction (av. 0.38 ± 0.04) followed by micro- (av. -0.17 ± 0.05) and pico-fractions (av. ?0.35 ± 0.05). Similarly, in total ingestion of copepods, nano-fraction (69.7%) was the highest followed by micro- (28.9%) and pico-fractions (1.37%). The grazing pressure of Noctiluca on the total phytoplankton was found to be 27.7% of the standing stock and 45.6% of the production, whereas in the case of copepods, it was 9.95% of the standing stock and 16.6% of the production. The study showed that the grazing pressure of Noctiluca on the total phytoplankton as well as larger phytoplankton fraction was 2.8- and 8-folds higher than that of the copepods. This suggests the leading role of Noctiluca as an effective grazer of larger phytoplankton along the southwest west coast of India, especially during the Peak/Late Southwest Monsoon.     

Variation of phytoplankton assemblages of Kongsfjorden in early autumn 2012: a microscopic and pigment ratio-based assessment

Phytoplankton species distribution and composition were determined by using microscopy and pigment ratios in the Kongsfjorden during early autumn 2012. Variation in sea surface temperature (SST) was minimal and matched well with satellite-derived SST. Nutrients were generally limited. Surface phytoplankton abundance ranged from 0.21?×?10³ to 10.28?×?10³ cells L^?1. Phytoplankton abundance decreased with depth and did not show any significant correlation with chlorophyll a (chl a). Column-integrated phytoplankton cell counts (PCC) ranged from 94.3?×?10⁶ cells m^?2 (Kf4) to 13.7?×?10⁶ cells m^?2 (Kf5), while chl a was lowest at inner part of the fjord (6.3 mg m^?2) and highest towards the mouth (24.83 mg m^?2). Biomass from prymnesiophytes and raphidophytes dominated at surface and 10 m, respectively. The contribution of Bacillariophyceae to biomass was low. Generally, heterotrophic dinoflagellates were great in abundance (12.82 %) and ubiquitous in nature and were major contributors to biomass. Various chl pigments (chl b, chl c, phaeopigments (phaeo)) were measured to obtain pigment/chl a ratios to ascertain phytoplankton composition. Phaeo were observed only in inner fjord. Chl b:a ratios and microscopic observations indicated dominance of Chlorophyceae at greater depths than surface. Furthermore, microscopic observations confirmed dominance of chl c containing algae throughout the fjord. The study indicates that pigment ratios can be used as a tool for preliminary identification of major phytoplankton groups. However, under the presence of a large number of heterotrophic dinoflagellates such as Gymnodinium sp. and Gyrodinium sp., pigment signatures need to be supplemented by microscopic observations.     

Antibiotic resistance and plasmid profiling of <Emphasis Type="Italic">Vibrio</Emphasis> spp. in tropical waters of Peninsular Malaysia

Vibrio species isolated from four different sampling stations in the west coast of Peninsular Malaysia were screened for their antimicrobial resistance and plasmid profiles. A total of 138 isolates belonging to 15 different species were identified. Vibrio campbellii, V. parahaemolyticus, V. harveyi, and V. tubiashii were found to predominance species at all stations. High incidence of erythromycin, ampicillin, and mecillinam resistance was observed among the Vibrio isolates. In contrast, resistance against aztreonam, cefepime, streptomycin, sulfamethoxazole, and sulfonamides was low. All the Vibrio isolates in this study were found to be susceptible to imipenem, norfloxacin, ofloxacin, chloramphenicol, trimethoprim/sulfamethoxazole, and oxytetracycline. Ninety-five percent of the Vibrio isolates were resistant to one or more different classes of antibiotic, and 20 different resistance antibiograms were identified. Thirty-two distinct plasmid profiles with molecular weight ranging from 2.2 to 24.8 kb were detected among the resistance isolates. This study showed that multidrug-resistant Vibrio spp. were common in the aquatic environments of west coast of Peninsular Malaysia.     

Discriminant analysis for the prediction of sand mass distribution in an urban stormwater holding pond using simulated depth average flow velocity data

The approach of this paper is to predict the sand mass distribution in an urban stormwater holding pond at the Stormwater Management And Road Tunnel (SMART) Control Centre, Malaysia, using simulated depth average floodwater velocity diverted into the holding during storm events. Discriminant analysis (DA) was applied to derive the classification function to spatially distinguish areas of relatively high and low sand mass compositions based on the simulated water velocity variations at corresponding locations of gravimetrically measured sand mass composition of surface sediment samples. Three inflow parameter values, 16, 40 and 80 m³ s^?1, representing diverted floodwater discharge for three storm event conditions were fixed as input parameters of the hydrodynamic model. The sand (grain size?>?0.063 mm) mass composition of the surface sediment measured at 29 sampling locations ranges from 3.7 to 45.5 %. The sampling locations of the surface sediment were spatially clustered into two groups based on the sand mass composition. The sand mass composition of group 1 is relatively lower (3.69 to 12.20 %) compared to group 2 (16.90 to 45.55 %). Two Fisher’s linear discriminant functions, F ₁ and F ₂, were generated to predict areas; both consist of relatively higher and lower sand mass compositions based on the relationship between the simulated flow velocity and the measured surface sand composition at corresponding sampling locations. F ₁?=??9.405?+?4232.119?×?A???1795.805?×?B?+?281.224?×?C, and F ₂?=??2.842?+?2725.137?×?A???1307.688?×?B?+?231.353?×?C. A, B and C represent the simulated flow velocity generated by inflow parameter values of 16, 40 and 80 m³ s^?1, respectively. The model correctly predicts 88.9 and 100.0 % of sampling locations consisting of relatively high and low sand mass percentages, respectively, with the cross-validated classification showing that, overall, 82.8 % are correctly classified. The model predicts that 31.4 % of the model domain areas consist of high-sand mass composition areas and the remaining 68.6 % comprise low-sand mass composition areas.     

Assessment of heavy metal pollution in vegetables and relationships with soil heavy metal distribution in Zhejiang province,China

There are increasing concerns on heavy metal contaminant in soils and vegetables. In this study, we investigated heavy metal pollution in vegetables and the corresponding soils in the main vegetable production regions of Zhejiang province, China. A total of 97 vegetable samples and 202 agricultural soil samples were analyzed for the concentrations of Cd, Pb, As, Hg, and Cr. The average levels of Cd, Pb, and Cr in vegetable samples [Chinese cabbage (Brassica campestris spp. Pekinensis), pakchoi (Brassica chinensis L.), celery (Apium graveolens), tomato (Lycopersicon esculentum), cucumber (Colletotrichum lagenarium), cowpea (Vigna unguiculata), pumpkin (Cucurbita pepo L.), and eggplant (Solanum melongena)] were 0.020, 0.048, and 0.043 mg kg^?1, respectively. The Pb and Cr concentrations in all vegetable samples were below the threshold levels of the Food Quality Standard (0.3 and 0.5 mg kg^?1, respectively), except that two eggplant samples exceeded the threshold levels for Cd concentrations (0.05 mg kg^?1). As and Hg contents in vegetables were below the detection level (0.005 and 0.002 mg kg^?1, respectively). Soil pollution conditions were assessed in accordance with the Chinese Soil Quality Criterion (GB15618-1995, Grade II); 50 and 68 soil samples from the investigated area exceeded the maximum allowable contents for Cd and Hg, respectively. Simple correlation analysis revealed that there were significantly positive correlations between the metal concentrations in vegetables and the corresponding soils, especially for the leafy and stem vegetables such as pakchoi, cabbage, and celery. Bio-concentration factor values for Cd are higher than those for Pb and Cr, which indicates that Cd is more readily absorbed by vegetables than Pb and Cr. Therefore, more attention should be paid to the possible pollution of heavy metals in vegetables, especially Cd.