Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome studies

● Riverine microbiomes exhibited hyperlocal variation within a single transect. ● Certain family-level taxa directionally associated with river center and bank. ● Taxon accumulation curves within a transect urges more nuanced sampling design. Microbial communities inhabiting river ecosystems play crucial roles in global biogeochemical cycling and pollution attenuation. Spatial variations in local microbial assemblages are important for detailed understanding of community assembly and developing robust biodiversity sampling strategies. Here, we intensely analyzed twenty water samples collected from a one-meter spaced transect from the near-shore to the near-center in the Meramec River in eastern Missouri, USA and examined the microbial community composition with 16S rRNA gene amplicon sequencing. Riverine microbiomes across the transect exhibited extremely high similarity, with Pearson’s correlation coefficients above 0.9 for all pairwise community composition comparisons. However, despite the high similarity, PERMANOVA revealed significant spatial differences between near-shore and near-center communities (p = 0.001). Sloan’s neutral model simulations revealed that within-transect community composition variation was largely explained by demographic stochasticity (R² = 0.89). Despite being primarily explained by neutral processes, LefSe analyses also revealed taxa from ten families of which relative abundances differed directionally from the bank to the river center, indicating an additional role of environmental filtering. Notably, the local variations within a river transect can have profound impacts on the documentation of alpha diversity. Taxon-accumulation curves indicated that even twenty samples did not fully saturate the sampling effort at the genus level, yet four, six and seven samples were able to capture 80% of the phylum-level, family-level, and genus-level diversity, respectively. This study for the first time reveals hyperlocal variations in riverine microbiomes and their assembly mechanisms, demanding attention to more robust sampling strategies for documenting microbial diversity in riverine systems.     

Monitoring methods for large micro- and meso-litter and applications at Baltic beaches

To complement existing micro-, meso and macro-litter monitoring strategies at sandy beaches, two user-friendly methods were further-developed and tested. The Rake-method and the Frame-method focus on large-micro (>2 mm) and meso-litter (5–25 mm) in the 30–50 mm upper sediment layer and were applied at 58 surveys at 15 sandy beaches of the German and Lithuanian Baltic Sea coast between 2014 and 2016. The Rake-method investigates sandy sediments to a depth of up to 50 mm. In average, we found 2.6 items / m² in Germany (65% micro and meso-litter) and 0.6 items / m² in Lithuania (66% micro and meso-litter). Using the Frame-method, covering the upper 30 mm, we received 1.8 items / m² in Germany (64% micro and meso-litter) and 5.3 items / m² in Lithuania (86% micro and meso-litter). Mostly found were cigarette butts, artificial polymers and in Lithuania paraffin. To test the reliability of both methods, recovery experiments were carried out. Depending on color and structure between 31 and 100% of all items were recovered by the Frame-method and 31–77% by the Rake-method. Using the Matrix Scoring Technique, tourism was identified as major pollution source. Both methods turned out to be suitable for sandy beaches, even if they are regular cleaned, and to assess pollution hot-spots. Both methods do not require elaborated equipment or a laboratory, are low in costs and can be carried out by volunteers. In comparison, the Rake method turned out to be more robust and cost-effective.     

天津市“城-郊-乡”样带土壤种子库特征分析

为了解天津市不同地理位置土壤种子库物种组成和群落结构的变化,沿天津市设置＂城区—城郊—远郊＂的生态样带,在6个典型样地选取20个样方进行土壤种子库的采样工作并进行萌发试验。结果表明：土壤种子库的密度、物种组成及群落结构差异性明显,除趋势对应分析后分异出典型的城市土壤种子库、城郊土壤种子库、远郊土壤种子库3种类型。从远郊到城区,土壤种子库的密度递增,相似性指数也递增,而物种丰富度却递减。相比远郊地区,城区、城郊区土壤种子库物种丰富度损失率分别为66.67%、45.23%。城区因城市化水平较高及频繁的人为干扰致使土壤种子库物种呈现匀质化特点,物种多为一年生的耐踩踏草本。城郊区的多样性指数、生态优势度指数、均匀度指数最低,但是种子库密度较大,物种丰富,萌发种子中木本植物可观,适合用于进行植被恢复的试验研究。     

Population dynamics of vibrio species in the river Narmada at Jabalpur

Several studies on the presence and ecology of various Vibrio sp have been reported in coastal and estuarine waters throughout the world, but there is trifling information available on the distribution of this organism of colossal pathogenic potential in the fresh water riverine environment. Thus, we conducted a multiyearenvironmental study to scrutinize the occurrence of members of genus Vibrio in the largest west flowing river of the Indian subcontinent, which is also the largest river of central India, the Narmada. Statistical analysis was done to reveal major environmental factors controlling the presence of Vibrio sp in the river Narmada. Monthly field samplings were conducted between January 2002 and December 2003 at four different sites in Jabalpur (MP), India. At each site, water samples were taken and physicochemical and bacteriological parameters were measured. The identity of the isolates was confirmed by employing 16S rRNA analysis. The organisms were found to be widely distributed in the river with regular seasonal variations. The density of Vibrio was found to be correlated with temperature, coliforms and other heterotrophic bacteria. Water temperature accounted for most of the variability in the concentration of Vibrio spAs typical fecal pollution indicators may not access public health risk from potential pathogens such as vibrios, hence special monitoring programme for vibrios may adequately be included in the water quality management.     

Responses of phytoplankton and periphytic diatoms to environmental factors in a tropical riverine reservoir北大核心CSCD

Riverine reservoirs have a short water retention time, which is ecologically more similar to that of rivers. Generally, phytoplankton-based approaches are used for lakes and periphytic diatom-based approach for rivers. To understand the differences in the responses of phytoplankton and periphytic diatoms to environmental variables for riverine reservoirs, we collected periphytic diatom samples on artificial substrata as well as phytoplankton samples from a tropical reservoir with a resident time less than 10 days. Our results showed that 131 phytoplankton species and 138 periphytic diatoms were detected; the variation of phytoplankton community was mainly reflected by the dominant species with a strong response to the environmental variables at a time scale, whereas the variation of periphytic diatom community was noted in both the species composition and the dominant species, with a strong response at spatial-temporal scales. The multivariate regression analysis and redundancy analysis showed that environmental factors have higher explanations for the variance of the periphytic diatom community (R2 = 0.27). Temperature was the key explanatory variable for phytoplankton, planktonic diatoms and periphytic diatoms (P < 0.01). However, dissolved oxygen and nitrate were also detected as significant explanatory factors associated with periphytic diatom community (P < 0.01). Thus, the periphytic diatoms were concluded to be more sensitive to environmental change and were associated with more environmental variables than phytoplankton. Periphytic diatoms appear to provide more ecological information than phytoplankton for riverine reservoirs. © 2018 Science Press. All rights reserved.     

Beach macro-litter monitoring on southern Baltic beaches: results,experiences and recommendations

Major objectives were to provide a comprehensive dataset on beach macro-litter for parts of the southern Baltic Sea and to analyse if the methodology is fully applicable and a suitable monitoring method in the Baltic. We carried out a regular macro litter beach monitoring (OSPAR methodology, 4 time a year) on 35 beaches along the German and Lithuanian Baltic coast over 2–5 years. Additional experiments addressed the subjectivity of the field surveys and spatio-temporal variability on different scales. We observed no seasonality of the data and a monthly compared to a 3-monthly sampling resulted in 3 times higher annual item numbers. Along the Lithuanian coast, the average number of items per survey varied between 138 and 340 and along the German Baltic coast between 7 and 404, with a median value of 47. All data showed a very high spatio-temporal variability. Using the Matrix Scoring Technique we assessed beach litter sources. With 50% tourism and recreation was the most important source. 3D–transport simulations helped to explain the minor role of shipping as a source and, compared to the North Sea, the low numbers of items on German Baltic beaches. Floating litter had a short duration time in the western Baltic Sea and offshore drift dominated. Further, the common regular beach cleanings reduced the potential for local litter accumulation and translocation. We suggest a monitoring system on 14 Baltic beaches in Germany and 2 in Lithuania and provide cost calculations. The analysis of macro-litter in cormorant nesting material and the search for beached dead animals did not show any result. We can conclude that the macro-litter beach monitoring method is less suitable for Baltic beaches and should only serve as a complementary method in combination with others.     

Sources and dynamics of large logs in a temperate floodplain river.

Large logs, important agents of biophysical heterogeneity in temperate floodplain rivers, have been virtually eliminated from modified systems. Our purpose was to quantify the sources and dynamics of large logs (> or = 1 m diameter) in the mainstem of a nearly pristine system: the Queets River, Washington, USA. Erosion of forests by the river supplies 0.40 logs x (100 m)(-1) x yr(-1) to the channel. Most (72%) are new logs entering the river for the first time as the river undercuts mature fluvial terraces dominated by large conifers. Retrospective airphoto analyses demonstrate that, over 63 years, the Queets River recruits 95% of new logs from a riparian corridor extending 265 m laterally on both banks, mostly through channel meandering. However, input rates are patchy, with 10% of the valley length supplying 38% of the new logs. As the river moves laterally, remnant logs are left on channel surfaces that later develop riparian forests and reenter the river when those forests erode. Remnant logs lying on the floodplain forest floor surface or buried in alluvium constitute 21% and 7% of the annual inputs from bank erosion, respectively. We estimate that 50% of logs deposited in the channel in a given year, including those underpinning logjams, are transported downriver within five years. Over the next 55 years, bank erosion reclaims an additional 23%, leaving 27% of the logs stable for > 60 years. Simulations indicate that recurrent transport is common, with half of the large conifers being deposited in > or = 3 locations and transported > or = 1.5 km prior to disintegrating. One in ten logs links distant reaches by occupying > or = 7 locations spanning > or = 12.0 km. Instream supplies are therefore a mixture of new and old logs from nearby and upstream forests, sustained by the recapture and transport of stockpiled remnant logs during periods when new inputs are low. We propose that patchy input rates and the periodic rearrangement of large logs are important drivers of temporal variation in river valley habitats, adding to the spatial complexity created by stable logs. These findings underscore the importance of extensive mature forests and connectivity in temperate floodplain rivers.     

Accumulation of lead, cadmium and chromium in some plants cultivated along the bank of river Ribila at Odo-nla area of Ikorodu, Lagos state, Nigeria

Heavy metal in soil samples and in washed and unwashed samples of Telfaria occidentalis (ugwu) and Talinum triangulare (waterleaf) cultivated on the bank of river Ribila in Odo-nla village were determined. The soil was moderately polluted with cadmium when compared with Federal Environmental Protection Agency standards. The difference between the unwashed and washed plant samples revealed that metal pollutants exist as superficial contaminants on the foliage surface which is the edible portion and if the foliage portion is washed thoroughly it may be safe for dietary consumption. There is no doubt that continuous discharge of effluent and gaseous emissions from the industries located in this area and dumping of domestic wastes into the river may lead to higher concentrations of these heavy metals in the soil and in the tissue of the leafy vegetables cultivated on the river bank over time. This can eventually lead to pollution of the soil and the cultivated plants, which are ready source of food for the people and other organisms in the food chain.     

Dissolved Ions of Trace and Major Elements and in Suspended Sediments in the Nile, Egypt

Dissolved ions and suspended participates from twelve water samples from Sohag (different localities) and Aswan (behind and below the High Dam) areas were collected along the River Nile, upper Egypt, which is at present affected seriously by pressure of population, intense industrial and agricultural activities, and atmospheric fallout. Eighteen trace and nine major ions in solution and fourteen metals in suspension were analyzed to establish whether elements are of anthropogenic or natural origin. Results of this study show that the Nile water was contaminated with high concentrations of dissolved lead, and with copper, nickel and mercury to a lesser extent, suggesting that these contaminants are generated from anthropogenic activities. the other dissolved ions in the Nile are of natural origin because their metal concentrations fall within the range of the normal background and average world dissolved values for inland waters. Results show that the usual constituents of suspended particulates in the Nile seem to be some metals (Cu and Zn) adsorbed on iron and manganese oxide/hydroxide. the results also reveal that most trace and major metal particulates increase from south to north due to activities associated with the dense population living along the Nile banks. No significant differences were observed between the chemical composition of trace and major elements taken on the east and west river Nile banks.     

Evaluation of a Market in Wetland Credits: Entrepreneurial Wetland Banking in Chicago

Abstract: With the rise of market‐led approaches to environmental policy, compensation for permitted discharge of dredge or fill material into wetlands under Section 404 of the U.S. Clean Water Act has been purchased increasingly from entrepreneurial third‐party providers. The growth of this practice (i.e., entrepreneurial wetland banking) has resolved many challenges associated with wetland compensation. But it has also produced (1) quantifiable temporal loss of wetland ecological functions, (2) spatial redistribution of wetland area, and (3) a degree of regulatory instability that may pose a threat to entrepreneurial compensation as a sustainable component of wetland‐compensation policy. We used achieved compensation ratios, lapse between bank credit sale and the attainment of performance standards, distance between impact and bank site, and changes in bank market area to examine these 3 factors. We analyzed data from a census of all such transactions in the Chicago District of the U.S. Army Corps of Engineers, compiled from site visits, Corps databases, and contacts with consultants and Section 404 permittees. Entrepreneurial banking provided compensation at a lower overall ratio than nonbank forms of compensation. Approximately 60% of bank credits were sold after site‐protection standards were met but before ecological performance standards were met at the bank site. The average distance between bank and impact site was approximately 26 km. The area of markets within which established banks can sell wetland credits has fluctuated considerably over the study period. Comparing these data with similar data for other compensation mechanisms will assist in evaluating banking as an element of conservation policy. Data characterizing the performance of entrepreneurial wetland banks in actual regulatory environments are scarce, even though it is the most established of similar markets that have become instrumental to federal policy in administering several major environmental protection laws.     

Mobilization of different metals between Tamarix parts and their crystal salts – soil system at the banks of river Nile,Aswan, Egypt

In order to study the relation of the mobility and distribution of metals between Tamarix parts and their crystal salts – soil system, different experiments were conducted with plant-rich and plant-free soils at the banks of river Nile, Aswan, Egypt. For these purposes, Tamarix top and subsoil samples near and far from the plant were collected from six different locations at the banks of river Nile. Elemental analysis of Fe, Mn, Ca, Mg, Cr, Cu, Ni, Zn, Cd and Pb in soil, and in different parts of Tamarix and their crystal salt samples was carried out by atomic absorption spectrometry, whereas Na and K were measured by atomic emission spectrophotometry. The bioavailability of metals in the soil samples was evaluated by determining their contents using sequential extraction single-step, providing higher metal concentrations in occluded Fe/Mn oxide fraction. The ratio of heavy metal concentrations in topsoil to that in subsoil enhancement (RTE) ranged from 0.67 to 4.4 and 0.22 to 4.61 for soil Tamarix and soil free from plant, respectively for all measured total element concentrations. Data indicate that the mobility expressed as transfer factor (TF) was obtained as Fe?>?Mg?>?Cr?>?Mn?>?Ca?>?K?>?Na, for Tamarix leaves. The major part of accumulated Na in Tamarix is retained in the plant leaves, while roots accumulated high concentration of Co.     

A numerical study of hypothetical storm surge and coastal inundation for AILA cyclone in the Bay of Bengal

The head Bay region bordering the Bay of Bengal is highly vulnerable to tropical cyclones. Catastrophic risks from storm surge and associated inundation are quite high due to high population density in coastal areas, socio-economic conditions, and shallow bathymetry. It features the world’s largest deltaic system comprising of ‘Sunderbans’ bordered by West Bengal and Bangladesh. In a geomorphologic sense, the head Bay region is a low-lying belt comprising several barrier islands and river drainage systems, numerous tidal creeks, and mud flats having a high risk for widespread inundation. In addition, the high tidal range together with low-lying topography leads to high risk and vulnerability from storm surge inundation. During May 2009, a severe cyclonic storm Aila struck West Bengal causing enormous destruction to life and property along coastal belts of West Bengal and Bangladesh. It was the strongest pre-monsoon cyclone in the past two decades that had landfall in West Bengal. This work reports on a numerical study for hypothetical storm surge and associated inundation from Aila using the ADCIRC model. The study covers a comprehensive qualitative analysis on water level elevation and onshore inundation for West Bengal and Bangladesh regions. The estimated peak storm surge was about 4 m in the Sunderban region that propagated into all major riverine systems, inundating the river banks as well the inland areas. Numerical simulations indicate an average inland penetration distance of 350 m with a maximum of 600 m at various coastal locations in West Bengal and Bangladesh. The study emphasizes the need and importance of inundation modeling system required for emergency preparedness and disaster management.     

Biochemical composition and early diagenesis of organic matter in coastal sediments of the NW Adriatic Sea influenced by riverine inputs

River inputs influence trophodynamic and biogeochemical processes of adjacent continental shelves. In order to provide new insights on the influence of continental inputs on the benthic trophic state and early diagenesis of sediment organic matter we collected surface sediments in the NW Adriatic Sea at three stations located at increasing distance from the Po River. Sediment samples were collected in four periods characterized by different river outflows and analysed for chloropigment content (chlorophyll-a and phaeopygments), protein, carbohydrate and lipid concentrations, prokaryote abundance and aminopeptidase activity. Sediments of the NW Adriatic Sea displayed high organic loads, tightly coupled with the outflow dynamics of the Po River. A major flooding event was responsible of an enhanced accumulation of organic material on the sea bottom. The resulting increased nutrient load in the sediment impaired organic matter degradation processes. The results of the present study suggest that the enhanced trophic state of marine coastal sediments subjected to riverine inputs are related not only to the increased nutrient inputs, but that they may be amplified by impaired degradation processes.     

土壤种子库研究的几个热点问题

土壤种子库是指存在于土壤表层凋落物和土壤中全部活性种子的总和。土壤中有活性的种子是植物群落的一部分,是新植株的来源。土壤种子库可以分为瞬时土壤种子库和持久土壤种子库。随着群落生态学的发展,土壤种子库的研究已经成为植物生态学重要的一部分,研究内容主要包括:(1)土壤种子库的组成和分布;(2)土壤种子库的动态;(3)地上植被与土壤种子库的关系;(4)干扰对土壤种子库的作用;(5)土壤种子库在生态恢复中的作用。文章在对目前土壤种子库的研究方法、主要研究内容方面总结的基础上,认为土壤种子库在合适的干扰作用下对退化生态系统的恢复以及植被更新发挥重要的作用,同时需进一步加强对这一过程中种子萌发、幼苗建立限制因素的研究。     

Development of a ‘Matrix Scoring Technique’ to determine litter sources at a Bristol Channel beach

Litter at beaches can come from more than one source and determining the proportions to assign pollution to different sources is very complex. There is no widely accepted methodology at present that links litter items to their source. The aim of this study was to create a method of assigning a source to litter found on beaches of the Bristol Channel but which could equally be used on any beach. Various methods that attempt to establish the source of beach litter were evaluated; their strengths, weaknesses, applicability and reliability for use on Bristol Channel, UK beaches were considered. Elements of existing methods coupled with new ideas were utilized in the production of a ‘refined’ methodology: consequently a new method of assigning a source to beach litter was developed. The developed ‘Matrix Scoring Technique’ was applied to data collected at Minehead beach on the Bristol Channel, UK. Several numerical and nomenclature variations were used to produce a system that reflected the various sources and eliminated as much bias as possible. This cross-tabulated matrix scoring system can produce an insight into the contribution of different source groups to litter found on beaches. This novel approach requires further testing with emphasis on a control data set.     

Some observations of sea turtle nesting activity in Costa Rica

Low level aerial observations were used to obtain synoptic records of the distribution of sea turtle nesting activity along both coasts of Costa Rica. Pertinent environmental information was simultaneously recorded including beach characteristics, river effluents, and evidence of coastal currents. Other correlative information was obtained from detailed maps, current charts, and climatological data. On the Caribbean coast, as expected, green turtle (Chelonia mydas) nesting was concentrated on the beaches between the Tortuguero and Parismina Rivers. On the Pacific coast, two major nesting beaches for the Pacific ridley Lepidochelys olivacea were found, each having over 100 thousand turtles aggregated offshore during the peak period between September and November. Aggregations were present at least from July through December. Massed nesting occurs each year on these same beaches and the event is known as the salida de flota by the natives of Guanacaste Province. Numerous less important nesting beaches were also found. Nesting density did not correlate well with beach quality but, instead, appeared to be related to the proximity of the beach to offshore currents. Oceanic current systems apparently facilitate the transport of sea turtles to the general vicinity of the important nesting beaches on both coasts of Coata Rica.Contribution No. 1557 from the Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, Florida, USA.     

Status of Species Conservation Banking in the United States

Abstract:  Receiving financial gains for protecting habitat may be necessary to proactively protect endangered species in the United States. Species conservation banking, the creation and trading of "credits" that represent biodiversity values on private land, is nearly a decade old. We detail the biological, financial, and political experience of conservation banking in the United States. We contacted agencies, nongovernmental organizations, and bank owners and compiled comprehensive accounts of the experiences of current banks. There are 76 properties identified as conservation banks in the United States, but only 35 of these are established under a conservation banking agreement approved by the U.S. Fish and Wildlife Service (USFWS). The 35 official conservation banks cumulatively cover 15,987 ha and shelter a range of biodiversity, including more than 22 species listed under the U.S. Endangered Species Act. Financial motives drove the establishment of 91% of conservation banks, and the majority of for-profit banks are breaking even or making money. With credit prices ranging from $3,000 to $125,000/0.41 ha (1 acre), banking agreements offer financial incentives that compete with development and provide a business-based argument for conserving habitat. Although the bureaucracy of establishing an agreement with the USFWS was burdensome, 63% of bank owners reported they would set up another agreement given the appropriate opportunity. Increasing information sharing, decreasing the time to establish agreements (currently averaging 2.18 years), and reducing bureaucratic challenges can further increase the amount of private property voluntarily committed to banking. Although many ecological uncertainties remain, conservation banking offers at least a partial solution to the conservation versus development conflict over biodiversity.     

Studies on Merops orientalis Latham 1801 with special reference to its population in Mayiladuthurai, Tamil Nadu

Role of habitat-structure and climatic factors in the population dynamics of the small green bee-eater Merops orientalis was evaluated in three habitats viz., agricultural lands, river banks and human habitations during 1991-1993. The river banks supported relatively high population of bee-eaters (157/Km2) followed by the agricultural lands (101/Km2) and human habitations (58/Km2). Bee-eater populations showed year-wise variations in river banks and human habitations having high values during 1992 (123/Km2) and 1993 (43/Km2) respectively. Agricultural lands showed a significantly low mean density in 1991 than other years. Seasonal variations in the bee-eater densities among the habitats were also recorded. Vegetation structure, food (insects) availability, climatic conditions and human disturbance were the casual factors for variations in bee-eater populations.     

城市景观河道不同类型驳岸界面微生物生态研究

对某景观河道鹅卵石驳岸、泥岸、石砌驳岸和砼仿木桩驳岸4种类型驳岸的河水/河床界面上覆水质及界面功能微生物生态多样性进行了研究.结果表明:4种驳岸的界面上覆水质以鹅卵石驳岸和泥岸较好,而石砌驳岸和砼仿木桩驳岸较差;界面上覆水和界面泥样的功能微生物菌群数量都以鹅卵石驳岸最多,泥岸次之,砼仿木桩驳岸最少.在鹅卵石驳岸上鹅卵石的堆砌增加了水体与驳岸的接触面积,为微生物提供了更多的生存空间.泥岸对污染物的吸附能力较强,为微生物提供了有利的生存环境,微生物数量较大.