On the behaviour of the residence time at the bottom of the mixed layer

To understand why the findings of Deleersnijder et al. [(2006), Environ Fluid Mech 6: 25–42]—the residence time in the mixed layer in not necessarily zero at the pycnocline—are consistent with those of Delhez and Deleersnijder [(2006), Ocean Dyn 56:139–150]—the residence time in a control domain vanishes at the open boundaries of this control domain—, it is necessary to consider a control domain that includes part of the pycnocline, in which the eddy diffusivity is assumed to be zero. Then, depending on the behaviour of the eddy diffusivity near the bottom of the mixed layer, the residence time may be seen to exhibit a discontinuity at the interface between the mixed layer and the pycnocline. If such a discontinuity exists, the residence time is non-zero in the former and zero in the latter. This is illustrated by analytical solutions obtained under the assumption that the eddy diffusivity is constant in the mixed layer.     

On the parameterization of the roughness length for the air-sea interface in free convection

The roughness length at the air-sea interface during free convection (z_0fc) is mainly related to the convective velocity (w_*) rather than the friction velocity (u_*). The parameterization of z_0fc with w _* ² /g as proposed by Abdella and DAlessio in 2003 is evaluated. It is shown that their proposed formula is consistent with field measurements. In order to avoid self-correlation by using u_*, a new parameterization of w_* with wind speed (U_z) at height z and stability parameter (z/L, where L is the buoyancy length) is proposed. This new formula for w_* is in agreement with an independent field result.     

Planktonic bioluminescence in the pack ice and the marginal ice zone of the Beaufort Sea

An icebreaker cruise into the Beaufort Sea in the fall of 1986 provided a unique opportunity for studying planktonic bioluminescence in ice fields and in the marginal ice zone. Bathyphotometer casts (bioluminescence intensity, seawater temperature, beam attenuation coefficient, and salinity) and biological collections were made to a depth of 100 m. A light budget, which describes the planktonic species responsible for the measured bioluminescence, and a dinoflagellate species budget were constructed from the mean light output from luminescent plankton and plankton counts. The vertical distribution of bioluminescence among the ice stations was similar. The maximum intensities were 2 to 8×10⁶ photons s^-1 cm^-3 in the upper 50 m of the sea-ice interface. The marginal ice zone station (MIZ) exhibited a maximum intensity of 2 to 3×10⁸ photons s^-1 cm^-3 between 5 and 30 m depth. At Ice Station 2, Metridia longa and their nauplii contributed approximately 80% of stimulable bioluminescence in the upper 10 m but, overall, Protoperidinium spp. dinoflagellates contributed most of the light to a depth of 100 m. In the MIZ, Protoperidinium spp. dinoflagellates contributed 90% of the light within the upper 10 m, decreasing to 43% of the contributed light at a depth of 40 m. Below 40 m, dinoflagellate bioluminescence decreased to a few percent of the total to a depth of 90 m. Metridia spp. copepods contributed more than 50% of the light at depths from 40 to 90 m. Ostracods, larvaceans, and euphausiid furcilia contributed <1% of all bioluminescence at all depths sampled. Correlation analyses between measured bioluminescence (photons s^-1 cm^-3), the number of bioluminescent dinoflagellates and the light budget for the MIZ indicated highly significant associations: r=0.919, p=0.001, and r=0.912, p<0.001, respectively (Student's two-tailed t-tests). Bioluminescence was negatively correlated with seawater salinity at all stations (p=0.001). Maximum bioluminescence was measured in the less saline surface waters at all stations.     

Geochemical Characteristics of the Acid Mine Drainage in the Water System in the Vicinity of the Dogye Coal Mine in Korea

This study investigated geochemical characteristics of the acid mine drainage (AMD) discharged from the abandoned mine adits in the vicinity of the Dogye coal mine in Korea. Acid mine drainage discharged from Jeoncha pit adit of the Dogye coal mine, which is the main source of the AMD in the study area, had a pH value of 3.0 and concentrations of 2148mg SO₄ ^2– L^–1, 229mg Fe L^–1, 71mg A1 L^–1 and 11mg Mn L^–1. The reduction of some metal concentrations downstream from the discharge point could be explained on the basis of dilution and precipitation. The order of removal of metal ions downstream from the discharge point was Fe>A1, Cu>Zn, Mn. Acidity could be used as a good determining factor offering comprehensive and quantitative values for the polluting extent of acid mine drainage. The acidities existing in all acidic water samples in the Gunahan district originated primarily from mineral acidity, especially in the upper Nahan Creek from dissolved Fe and Al and in the middle and down Nahan Creek from dissolved Al. From the application of the WATEQ4F program, it was determined that predominant species of dissolved Fe in all water samples was Fe²⁺, and those of dissolved Al were AlSO₄ ⁺ and Al³⁺ except for IW2 sample which was associated with white precipitates. The species of dissolved Al in IW2 sample include also AlOH²⁺ and Al(OH)₂ ⁺. The saturation indices of goethite and haematite were positive in the water samples associated with ochrous precipitates (usually called Yellow Boy), therefore these solids might be precipitated. For the IW2 sample, the saturation indices of amorphous Al(OH)₃ and gibbsite were positive, so theoretically these solids might also be precipitated. By XRD analysis, it was found that goethite occurs in ochrous precipitates, and gibbsite in white precipitates.     

On the fine structure of the thermal bar front

The thermal bar—a hydrodynamic phenomenon, arising in natural basins due to successive changes of the water temperature across the temperature of maximum density (T_m, which is close to 4°C)—has been studied in laboratory experiments and by numerical simulations. The experiments were performed in a rectangular tank with an inclined bottom, filled with water with initial temperature T₀ < T_m and then heated at the surface. During the heating a basin-wide circulation develops, consisting of down-slope cascades in regions where T < T_m, a subsurface off-shore jet in the region where T > T_m, and a compensating flow at intermediate depths towards the shallow part of the tank, supplying both off-shore flows with waters from deeper regions. Analysis of the water temperature and density fields as well as the currents has revealed that the location of the convergence zone of the surface current (when formed) does not coincide with that of the Tm-isotherm. The thermal bar front is typically understood as a convergence zone near the 4°C-isotherm, formed due to the effect of cabbeling. Our experiments demonstrate, however, that the front is associated with the leading edge of the subsurface current. The increasing distance between the 4°C-isotherm and the subsurface jet has been recorded in the laboratory experiments. Numerical simulation results corroborate the laboratory experiments. A scaling analysis predicts the speed of propagation of this frontal zone to be U ~ [g × Δρ/ρ × H]^1/2, where H is the depth (increasing with time) of the upper thermo-active layer, ρ₀ a reference density, and Δρ is the characteristic horizontal density difference across the front. A combined analysis of laboratory, field and numerical data has corroborated this law.     

Confidence intervals for the mean of the delta-lognormal distribution

Data that are skewed and contain a relatively high proportion of zeros can often be modelled using a delta-lognormal distribution. We consider three methods of calculating a 95% confidence interval for the mean of this distribution, and use simulation to compare the methods, across a range of realistic scenarios. The best method, in terms of coverage, is that based on the profile-likelihood. This gives error rates that are within 1% (lower limit) or 3% (upper limit) of the nominal level, unless the sample size is small and the level of skewness is moderate to high. Our results will also apply to the delta-lognormal linear model, when we wish to calculate a confidence interval for the expected value of the response variable, given the value of one or more explanatory variables. We illustrate the three methods using data on red cod densities, taken from a fisheries trawl survey in New Zealand.

Respiration of the eggs of the giant cuttlefish Sepia apama

On the roofs of subtidal crevices, the giant cuttlefish (Sepia apama) of southern Australia lays clutches of lemon-shaped eggs which hatch after 3 to 5 mo. Diffusion of oxygen through the capsule and chorion membrane to the perivitelline fluid and embryo was modelled using the equation V˙ _O2 = G _O2(P _O2out−P _O2in), where V˙ _O2 = rate of oxygen consumption, G _O2 = oxygen conductance of the capsule, and P _O2 values = oxygen partial pressures across the capsule. During development, V˙ _O2 rose exponentially as the embryo grew, reaching 5.5 μl h⁻¹ at hatching. Throughout development, the capsule dimensions enlarged by absorption of water into the perivitelline space, increasing G _O2 by a combination of increasing surface area, and decreasing thickness of the capsule. These processes maintained P _O2in high enough to allow unrestricted V˙ _O2 until shortly before hatching. Diffusion limitation of respiration in hatching-stage embryos was demonstrated by (1) increased embryonic V˙ _O2 when P _O2out was experimentally raised, (2) greater V˙ _O2 of resting individuals immediately after hatching, and (3) reduced V˙ _O2 of hatchlings at experimental P _O2 levels higher than P _O2in before hatching. Thus, low P _O2in may be the stimulus to hatch. Potential problems of diffusive gas-exchange are mitigated by the relatively low incubation temperature (12 °C), which may be a factor limiting the distribution of the species to cool, southern waters. Received: 14 August 1999 / Accepted: 24 January 2000     

Shunning the night to elude the hunter: diurnal fireflies and the “femmes fatales”

Summary. Lucidota atra, a diurnal firefly, shares possession of defensive steroids (lucibufagins or LBGs) with nocturnal fireflies of the genus Photinus. Photinus are protected against predators by their LBGs, but not against fireflies of the genus Photuris, the so-called firefly femmes fatales, which prey upon Photinus, thereby acquiring LBGs for their own defense. We propose that L. atra may have been prompted evolutionarily to become diurnal by the opportunity to avoid, thereby, being hunted by Photuris. Indeed, L. atra, if offered to Photuris, were eagerly devoured by the latter, which sequestered their LBG’s. In feeding on L. atra, Photuris may be driven by a gustatory affinity for LBGs. Persistent nocturnality might therefore have put L. atra at risk vis à vis Photuris. Diurnality freed the firefly from that risk, without compromising its defended status with respect to other predators. Possession of LBGs may in fact account for L. atra’s unacceptability to birds and spiders.     

Stimulation of fat-body production in the polyps of the coralPocillopora damicornis by the presence of mutualistic crabs of the genusTrapezia

A mutualism exists between the xanthid crabs of the genusTrapezia and their host corals,Pocillopora damicornis. It has previously been established that these obligate coral residents benefit the coral hosts by defending them against echinoderm predators and by increasing the survival of polyps located deep between the coral branches. In turn, the corals apparently benefit the crabs by producing lipid-filled structures on which the trapezid crabs feed; these fat bodies may contain some of the lipid which in previous studies of coral metabolism has been termed excess. It was determined by experiments conducted at the Hawaii Institute of Marine Biology that the presence of crabs in colonies ofP. damicornis stimulates the polyps to produce the lipid-filled fat bodies; removal of crabs causes corals to cease producing fat bodies. A structure very similar to the fat bodies ofP. damicornis has been reported inAcropora durvillei. Both of these coral genera ordinarily possess xanthid-crab mutualists. This association between branching corals and crustaceans may have evolved because corals of these genera provide shelter among their branches and because these shallow-water corals are evidently capable of releasing lipid which is excess to the corals' metabolic needs, but which can be utilized by the crabs.     

Chitobiase activity in the epidermis and hepatopancreas of the fiddler crab Uca pugilator during the molting cycle

The activity of chitobiase, also known as N-acetyl-β-glucosaminidase, in the epidermis and hepatopancreas of the fiddler crab Uca pugilator (Bosc, 1802), during the molting cycle, was investigated. A pH optimum of 5 to 6 was found for the enzymatic activity in both the epidermis and hepatopancreas. The temperature optimum for epidermal and hepatopancreatic chitobiase activities was 50 to 60 °C. The K _m values for epidermal and hepatopancreatic chitobiase activities at 19 °C were 0.190 ± 0.027 and 0.203 ± 0.016 mM 4-methylumbelliferyl-N-acetyl-β-glucosaminide, respectively. Hepatopancreatic chitobiase activity was significantly higher than epidermal enzymatic activity in all the molt cycle stages tested except Postmolt Stage A-B. Chitobiase activity varied significantly during the molting cycle, with the epidermal enzymatic activity in Premolt Stage D_3–4 significantly higher than in Stage C (intermolt) and Premolt Stage D₀, whereas hepatopancreatic chitobiase activity in Premolt Stage D_3–4 was significantly higher than in all other molt stages tested. The patterns of chitobiase activity in the epidermis and hepatopancreas correlate well with the hemolymph titer of ecdysteroids in U. pugilator during the molting cycle; this suggests that chitobiase activity in both tissues is regulated at least in part by the steroid molting hormones. Received: 6 May 1998 / Accepted: 12 September 1998     

Factors influencing the gas composition in the vesicles of Sargassum

The composition of gas in the vesicles of Sargassum cf. leptopodum Sonder has been investigated. The oxygen content depends upon the oxygen partial pressure of the surrounding medium. It does not depend upon the photosynthetic activity of the vesicle. Evidence is provided that the lower limit of the vertical distribution zone of Sargassum cf. leptopodum Sonder is not controlled by the vesicles' capability of resisting hydrostatic pressure.     

Chitinolytic enzymes in the integument and midgut-gland of the shrimpPalaemon serratus during the moulting cycle

Chitinase andN-acetyl--D-glucosaminidase activity were quantified inPalaemon serratus (Pennant) integument and midgut gland during the moulting cycle. Studies were performed on specimens collected near Concarneau, France, in July 1989. The changes in specific activity are different in the two organs: in the midgut gland enzymatic activity is high throughout the whole moulting cycle with a weak peak at the early premoult Stage D1, whereas in the integument the activity of both enzymes is very low throughout post- and intermoult stages and rises only after premoult Stage D1. The highest specific activity is reached in D1 for chitinase and somewhat earlier (D1) forN-acetyl--D-glucosaminidase. The increase in specific chitinolytic activity coincides with an increase in ecdysteroids.     

A study on the landfill leachate and its impact on the groundwater quality of the greater area

Characterisation of the leachate originating from the Ano Liosia landfill (situated in Attica region, Greece) as well as assessment on the quality of the local aquifer were carried out. The experimental results showed that most of the parameters examined in the leachate samples such as colour, conductivity, TS, COD, NH₃–N, PO₄–P, SO₄ ^2–, Cl^–, K⁺, Fe and Pb were found in high levels. The organic load was quite high since the COD concentrations were in the range of 3250–6125mgL^–1. In addition, the low BOD/COD ratio (0.096–0.195), confirmed that the majority of this organic matter is not easily biodegradable. The groundwater near the landfill site was characterised as not potable and not suitable for irrigation water, since most of the physical and chemical parameters examined – such as colour, conductivity, DS, hardness, Cl^–, NH₃–N, COD, K⁺, Na⁺, Ca²⁺, Fe, Ni and Pb exceeded the permissible limits given by EE, EPA and the Greek Ministry of Agriculture. Furthermore, this study presents the application of the hydrologic evaluation of landfill performance (HELP) model for the determination of the yearly leakage from the base of the landfill after the final capping.     

Effect of the allelochemicals from the macrophyte Egeria densa on the competitive interactions of pelagic and littoral cladocerans

Macrophytes release allelochemicals, which affect pelagic cladocerans such as Daphnia. Using population growth experiments, we analysed the effects of allelochemicals from the macrophyte Egeria densa on the interaction between Daphnia mendotae and three littoral cladocerans (Diaphanosoma birgei, Macrothrix triserialis and Simocephalus mixtus). We found that allelochemicals from E. densa increased the abundance of all the tested cladocerans in spite of the presence of a competitor. This effect was stronger (nearly three to four times higher than in controls) for D. birgei and M. triserialis in the absence of D. mendotae. Independent of the presence of allelochemicals, S. mixtus, but not D. birgei and M. triserialis, reduced the abundance of D. mendotae as compared to controls. The rate of population increase (r) per day was significantly elevated due to the presence of Egeria’s allelochemicals (from 0.07–0.16?d^?1 without allelochemicals against 0.12–0.24?d^?1 with allelochemicals). In our competition experiments, the rates of population increase of the cladocerans were lower than those in single-species cultures when cultured in the absence of allelochemicals. However, in the presence of allelochemicals this trend was not consistent. Thus, the positive effects of Egeria’s allelochemicals over the cladoceran populations may enhance the grazing pressure on phytoplankton.     

Reproductive biology of the holothurians from the major communities of the New Caledonian Lagoon

The reproductive biology of nine species of aspidochirote holothurians from the major communities of the New Caledonian lagoon has been analysed. The data were obtained from monthly sampling from 1978 to 1982 of their populations on reef slopes and passes for Holothuria nobilis, H. fuscogilva, H. fuscopunctata and Thelenota ananas, in the inner lagoon for Stichopus variegatus, H. scabra and H. scabra versicolor and on reef flats for Actinopyga mauritiana, A. echinites and H. atra. The morphology and anatomy of the gonads and their annual cycle are described. The reproductive cycles, composed of the five phases of gonad growth, maturing, spawning, post-spawning and resting, were determined from the changes in the sexual stages, the gonad indices and the percentage of indeterminate sex. Three main reproductive patterns are recognized, annual cycles with spawning occurring during the warm season or during the cool season and a semiannual cycle. Other population parameters, such as the size of the mature oocytes, the mean size of the individuals at first sexual maturity, and absolute and relative fecundities were calculated and related to the mean size of the species, the taxonomy and the ecology. The reproductive strategies of the species show a gradient that is probably related to the stability of the biotopes, with smaller species living in the more intrable outer reef flats and larger species in deeper lagoon floors.     

A whole-animal bioassay for the determination of the food attractants of the lobster Homarus gammarus

A semi-quantitative assay is described for assessing the effectiveness of bait extracts for the lobster Homarus gammarus (L.), using an extract of the squid Loligo vulgaris Lamarck as a standard. Fractionation of this extract indicated that, while no single component was as attractive to lobsters as the whole, the recombination of the various components yielded a solution which was as attractive as the original extract. It appears likely that several different classes of chemosensory cell must be simultaneously stimulated for the initiation of feeding behaviour in the lobster.     

Ultrastructure of the spermatozoa of Hymenosomatidae (Crustacea: Brachyura) and the relationships of the family

The spermatozoa of the genus Odiomaris Ng and Richer de Forges, 1996 (=Amarinus Lucas, 1980) have the components typical of eubrachyuran (Heterotremata + Thoracotremata) sperm, but differ significantly from all other investigated eubrachyurans in at least ten characteristics: (1) presence of an epiopercular dome; (2) separation of all but the central region of the operculum from the remainder of the acrosome by an infra-opercular rim; (3) the fact that the acrosome is smaller in volume than the nucleus; (4) the acrosome is strongly emergent from the nucleus, being surrounded only basally by nuclear material; (5) the cytoplasmic sheath, ending anteriorly with the nucleus, is also basal; (6) division of the acrosome contents into an inner and outer acrosome zone is scarcely apparent in longitudinal section as the inner zone is narrow and of doubtful homology; (7) the thin, putative inner acrosome zone is anteriorly almost septate owing to several longitudinal corrugations; (8) basally there is a unique “fringe zone”; (9) the acrosome, including the epinuclear dome, is longer than wide; (10) the unique helical and posterolateral disposition of the nuclear arms. From a purely spermatological viewpoint, Odiomaris (as exemplified by O. pilosus and O. estuarius), and provisionally the Hymenosomatidae, are thus excluded from the Thora- cotremata, in which they were formerly placed, nor are they readily placeable in the Heterotremata. Received: 30 December 1996 / Accepted: 4 February 1997     

Feeding association of the copepod Rhincalanus gigas with the tunicate salp Salpa thompsoni in the southern ocean

During a repeat grid survey and drogue study carried out in the Lazarev Sea in the austral summer of 1994 to 1995, a sudden collapse of a rich population of the tunicate Salpa thompsoni was observed at the onset of a phytoplankton bloom. This may have been related to the inability of salps to regulate their filtration rate and avoid clogging of their filtering apparatus at particle concentrations ≥1 mg (chlorophyll a) m⁻³. It was at this stage that large numbers of salp individuals had their branchial cavities invaded by the copepod Rhincalanus gigas. Incubations, to compare the feeding rates of R.␣gigas in the presence and absence of salps, showed that copepods are able to utilize the high concentrations of microplankton accumulated in the food strand of the salp, thus enhancing their grazing efficiency. This is likely to represent a typical form of opportunistic parasitism. However, the timing of the invasion, and the observation that most salps could survive prolonged exposure to R. gigas invasion, suggest that the association may also constitute a novel type of symbiosis. S.␣thompsoni could potentially benefit from R. gigas cleaning its filtering apparatus when clogging due to high particle concentrations occurs. Received: 15 July 1996 / Accepted: 20 July 1996     

Urea as a nitrogen source for the phytoplankton in the Oslofjord

Ambient concentrations of urea in the inner Oslofjord, Norway, showed a pronounced yearly cycle in 1980, with values in the range 0.1 to 10.0 μg-at N l^-1; this cycle resemble that of ammonia although urea concentrations were usually lower. The uptake of urea by phytoplankton was investigated using ¹⁵N. Urea was usually a less important N source than NH ₄ ⁺ , and accounted for 0 to 53% (mean 19%) of summed NH ₄ ⁺ +NO ₃ ^- + urea uptake rates from April to October. Absolute as well as relative (specific) uptake rates of urea were higher in the summer (June–August) than at other times. Uptake of urea was inhibited by NH ₄ ⁺ concentrations higher than 1 to 2 μg-at N l^-1. The summed NH ₄ ⁺ +NO ₃ ^- + urea uptake rate was exponentially related to temperature.     

Considerations of temperature in the context of the persistence classification in the EU

Simulation degradation studies for industrial chemicals, biocidal products and plant protection products are required in the EU to estimate half-lives in soil, water and sediment for the comparison to persistence criteria for hazard (P/vP) assessment, and for use in exposure assessments. There is a discrepancy between European regulatory approaches regarding the temperature at which degradation half-lives should be (1) measured in simulation degradation testing of environmental compartments, and (2) compared to the P/vP criteria. In this paper, an opinion is provided on the options for the experimental temperature and extrapolation to other conditions. A review of the historical development of persistence criteria did not give conclusive evidence of the temperature at which the half-lives that underpin the P-criteria were measured, but room temperature is likely. Half-lives measured at 20 °C are in line with the intentions of some international agreements, but in the EU there is a continued political debate regarding the relevant temperature for comparison with persistence criteria. Measuring degradation at 20 °C has the advantage that metabolites/transformation products can be identified with greater accuracy, and that kinetic fits to determine half-lives for parent compounds and metabolites carry less uncertainty. Extrapolation of half-lives to lower temperatures is possible for assessing environmental exposure, but the uncertainty of the persistence classification is smaller when measured half-lives are used for direct comparison with P/vP criteria, without extrapolation. Model simulations demonstrate the pattern of concentrations that can be expected for realistic worst case climate scenarios in the EU based on the half-life of 120 days in soil at 20 °C and of 40 days in water at 20 °C, and their temporal and spatial variability.