ROOT BIOMASS IN RELATION TO CHANNEL MORPHOLOGY OF HEADWATER STREAMS1

ABSTRACT: Intact riparian zones are the product of an incredibly complex multitude of linkages between the geomorphic, hydrologic, and biotiè features of the ecosystem. Land‐use activities that sever or alter these linkages result in ecosystem degradation. We examined the relationship between riparian vegetation and channel morphology by sampling species composition and herbaceous root biomass in incised (down‐cut and widened) versus unincised (intact) sections of unconstrained reaches in three headwater streams in northeastern Oregon. Incision resulted in a compositional shift from wetland‐obligate plant species to those adapted to drier environments. Root biomass was approximately two times greater in unincised sections than incised sections and decreased with depth more rapidly in incised sections than in unincised sections. Total root biomass ranged from 2,153 g m^‐2 to 4,759 g m^‐2 in unincised sections and from 1,107 g m^‐2 to 2,215 g m^‐2 in incised sections. In unincised sections less than 50 percent of the total root biomass was found in the top 10 cm, with approximately 20 percent in successive 10‐cm depth increments. In contrast, incised sections had greater than 60 percent of the total root biomass in the top 10 cm, approximately 15 percent in the 10 to 20 cm depth, less than 15 percent in the 20 to 30 cm depth, and less than 10 percent in the 30 to 40 cm depth. This distribution of root biomass suggests a positive feedback between vegetation and channel incision: as incision progresses, there is a loss of hydrologic connectivity, which causes a shift to a drier vegetation assemblage and decreased root structure, resulting in a reduced erosive resistance capacity in the lower zone of the streambank, thereby allowing further incision and widening.     

EFFECTS OF URBANIZATION ON CHANNEL INSTABILITY1

ABSTRACT: Channel instability and aquatic ecosystem degradation have been linked to watershed imperviousness in humid regions of the U.S. In an effort to provide a more process‐based linkage between observed thresholds of aquatic ecosystem degradation and urbanization, standard single event approaches (U.S. Geological Survey Flood Regression Equations and rational) and continuous hydrologic models (HSPF and CASC2D) were used to examine potential changes in flow regime associated with varying levels of watershed imperviousness. The predicted changes in flow parameters were then interpreted in concert with risk‐based models of channel form and instability. Although low levels of imperviousness (10 to 20 percent) clearly have the potential to destabilize streams, changes in discharge, and thus stream power, associated with increased impervious area are highly variable and dependent upon watershed‐specific conditions. In addition to the storage characteristics of the pre‐development watershed, the magnitude of change is sensitive to the connectivity and conveyance of impervious areas as well as the specific characteristics of the receiving channels. Different stream types are likely to exhibit varying degrees and types of instability, depending on entrenchment, relative erodibility of bed and banks, riparian condition, mode of sediment transport (bedload versus suspended load), and proximity to geomorphic thresholds. Nonetheless, simple risk‐based analyses of the potential impacts of land use change on aquatic ecosystems have the potential to redirect and improve the effectiveness of watershed management strategies by facilitating the identification of channels that may be most sensitive to changes in stream power.     

Recent Cattail Expansion and Possible Relationships to Water Management: Changes in Upper Taylor Slough (Everglades National Park,Florida, USA)

Recent appearance of cattail (Typha domingensis) within a southern Everglades slough—Upper Taylor Slough (Everglades National Park)—suggests ecosystem eutrophication. We analyze water quality, nutrient enrichment, and water management operations as potential drivers of eutrophication in Upper Taylor Slough. Further, we attempt to determine why surface water phosphorus, a parameter used commonly to monitor ecosystem health in the Everglades, did not serve as an early warning for eutrophication, which has broader implication for other restoration efforts. We found that surface water total phosphorus concentrations generally were below a 0.01 mg L⁻¹ threshold determined to cause imbalances in flora and fauna, suggesting no ecosystem eutrophication. However, assessment of nutrient loads and loading rates suggest Upper Taylor Slough has experienced eutrophication and that continued total phosphorus loading through a point-source discharge was a major driver. These nutrient loads, combined with increases in hydroperiods, led to the expansion of cattail in Upper Taylor Slough. We recommend other metrics, such as nutrient loads, periphyton and arthropod community shifts, and sediment core analyses, for assessing ecosystem health. Monitoring surface water alone is not enough to indicate ecosystem stress.     

Identification of Sediment Sources in Forested Watersheds With Surface Coal Mining Disturbance Using Carbon and Nitrogen Isotopes1

Abstract: Sediments and soils were analyzed using stable carbon and nitrogen isotope ratio mass spectrometry and carbon and nitrogen elemental analyses to evaluate the their ability to indicate land‐use and land management disturbance and pinpoint loading from sediment transport sources in forested watersheds disturbed by surface coal mining. Samples of transported sediment particulate organic matter were collected from four watersheds in the Southern Appalachian forest region of southeastern Kentucky. The four watersheds had different surface coal mining history that were classified as undisturbed, active mining, and reclaimed conditions. Soil samples were analyzed including reclaimed grassland soils, undisturbed forest soils, geogenic organic matter associated with coal fragments in mining spoil, and soil organic matter from un‐mined grassland soils. Statistically significant differences were found for all biogeochemical signatures when comparing transported sediments from undisturbed watersheds and surface coal mining disturbed watersheds, and the results were attributed to differences in erosion sources and the presence of geogenic organic matter. Sediment transport sources in the surface coal mining watersheds were analyzed using Monte Carlo mass balance un‐mixing and it was found that: δ¹⁵N showed the ability to differentiate streambank erosion and surface soil erosion; and δ¹³C showed the ability to differentiate soil organic matter and geogenic organic matter. Results from the analyses suggest that streambank erosion downstream of surface coal mining sites is an especially significant source of sediment in coal mining disturbed watersheds. Further, the results suggest that the sediment transport processes governing streambank erosion loads are taking longer to reach geomorphologic equilibrium in the watershed as compared with the surface erosion processes. The dual‐isotope technique provides a useful method for further investigation of the impact of surface coal mining in the uplands of the watershed upon the geomorphologic state of the channel and the source of organic matter in aquatic systems impacted by surface coal mining.     

An ecological approach to environmental impact assessment

Carbon cycling analysis is presented as a means for assessing anthropogenic perturbations in an ecosystem. Data from oligotrophic, eutrophic, and dystrophic (bog) lakes are used to show general trends in the lacustrine carbon cycle. The oligotrophic lake is an unstressed system and the eutrophic lake is under nutrient enrichment with high algal standing crops and productivity. The bog lake is a pH-stressed environment that is primarily a grazing ecosystem. It is hoped that a more effective environmental impact assessment will result from the use of carbon cycling as a unifying concept in ecosystem analysis.     

A Hydrologic Drying Bias in Water‐Resource Impact Analyses of Anthropogenic Climate Change

For water‐resource planning, sensitivity of freshwater availability to anthropogenic climate change (ACC) often is analyzed with “offline” hydrologic models that use precipitation and potential evapotranspiration (E_p) as inputs. Because E_p is not a climate‐model output, an intermediary model of E_p must be introduced to connect the climate model to the hydrologic model. Several E_p methods are used. The suitability of each can be assessed by noting a credible E_p method for offline analyses should be able to reproduce climate models’ ACC‐driven changes in actual evapotranspiration in regions and seasons of negligible water stress (E_w). We quantified this ability for seven commonly used E_p methods and for a simple proportionality with available energy (“energy‐only” method). With the exception of the energy‐only method, all methods tend to overestimate substantially the increase in E_p associated with ACC. In an offline hydrologic model, the E_p‐change biases produce excessive increases in actual evapotranspiration (E), whether the system experiences water stress or not, and thence strong negative biases in runoff change, as compared to hydrologic fluxes in the driving climate models. The runoff biases are comparable in magnitude to the ACC‐induced runoff changes themselves. These results suggest future hydrologic drying (wetting) trends likely are being systematically and substantially overestimated (underestimated) in many water‐resource impact analyses.     

Management issues in a Tasmanian tourist cave: potential microclimatic impacts of cave modifications

Caves can be difficult to navigate and often require physical modification to allow easy access for visitors. Single entrance caves double the access impact of each visitor. Visitors in tourist caves have direct physical effects such as the introduction of concrete and steel structures; transport of mud, dust, and nutrients; installation of lights and the exhalation of water vapour and carbon dioxide into the air. Indirect physical effects include alteration of the microclimate, both through physical modifications that change the ventilation regime and through the presence of visitors leading to changes in temperature, humidity and CO2 within the cave environment. Anthropomorphic changes to cave physical environments to aid access or to reduce backtracking can have adverse effects on the internal microclimate of cave systems with subsequent changes to the cave environment affecting the quality of decorations and cave art and the diversity of cave fauna. Although often stated that caves operate at or near a constant temperature, closer examination indicates that cave temperatures are neither static nor constant. The degree of variation depends largely on the structure and physical characteristics of the cave. Air temperature and humidity gradients between the inside and outside cave environment can result in air density differences, which create airflow, which will in turn affect the cave microclimate. As part of the development of a management framework for King Solomons Cave, Tasmania, a study of the microclimate was carried out on behalf of Tasmanian Parks and Wildlife Service. Analysis of the variables showed significant differences in air temperature within each site and between sites. These differences range from 4 degrees C variation at one site to 0 degrees C at another site. The data were used to model potential airflow between the cave and the external environment. Results indicate that part of the cave is dominated by airflow between the chimney and the cave entrance leading to microclimatic fluctuations, while stable climatic conditions occur at the end of the cave. Future management strategies that propose a passage from the chamber to the surface via the current end zone would create a potential for airflow induced microclimatic change, leading to a change in both the temperature and moisture regimes, necessitating the construction of an airtight double door system.     

Natural and Anthropogenic Methane Emission from Coastal Wetlands of South India

For the first time, the methane emissions from diverse coastal wetlands of South India have been measured. Annual emission rates varied widely, ranging from 3.10 mg/m²/hr (Bay of Bengal) to 21.56 mg/m²/hr (Adyar River), based on nature of the perturbance to each of the ecosystems studied. Distinct seasonality in methane emission was noticed in an unpolluted ecosystem (mangrove: 7.38 mg/m²/hr) and over a twofold increase was evident in the ecosystem that was disturbed by human activities (21.56 mg/m²/hr). The wide ranges in estimate suggest that methanogenesis occurs by both natural and anthropogenic activities in these coastal wetlands. Several physical and chemical factors such as salinity, sulfate, oxygen, and organic matter content influenced methanogenesis to a large degree in each of these ecosystems in addition to individual responses to human-induced stress. For example, there was a clear negative correlation between oxygen availability (0.99), sulfate (0.98), and salinity (0.98) with CH₄ emission in the Adyar river ecosystem. Although similar results were obtained for the other wetland ecosystems, CH₄ emission was largely influenced by tidal fluctuations, resulting in a concomitant increase in methanogenesis with high sulfate concentrations. This study demonstrates that coastal wetlands are potentially significant sources of atmospheric methane and could be a greater source if anthropogenic perturbations continue at the current rate. RID=" ID=" *Author to whom correspondence should be addressed.     

NITROGEN AND ORGANIC MATTER LOSSES IN NO‐TILL CORN CROPPING SYSTEMS1

ABSTRACT: Intensive cropping systems based on mechanical movement of soil have induced land degradation in most agricultural areas due to soil erosion and soil fertility losses. Thus, farmers have been increasing fertilization rates to maintain an economically competitive crop yield. This practice has resulted in water quality degradation and lake eutrophication in many agricultural watersheds. Research was conducted in the Patzcuaro watershed in central Mexico to develop appropriate technology that prevents nonpoint source pollution from fertilizers. Organic matter (OM) and nitrogen (N) losses in runoff and nitrate (NO₃‐N) percolation in Andisols with corn under conventional till (CT) and no‐till (NT) treatments using variable percentages of crop residue as soil cover were investigated for steep‐slope agriculture. USLE type runoff plots were used to collect water runoff, while suction tubes with porous caps at 30, 60, and 90 cm depth were used to sample soil water solutes for NO₃‐N analyses. Results indicated a significant reduction of N and OM losses in runoff as residue cover increased in the NT treatments. Inorganic N in runoff was 25 kg/ha for NT without residue cover (NT‐0) and 6 kg/ha for the NT with 100 percent residue cover (NT‐100). Organic matter losses in runoff were 157 and 24 kg/ha for the NT‐0 and NT‐100 treatments, respectively. Nitrate‐N percolation was evident in CT and NT with 100 percent residue cover (NT‐100). However, NT‐100 had higher NO₃‐N concentration at the root zone, suggesting the possibility of reducing fertilization rates with the use of NT treatments.     

WATER QUALITY IN SHALLOW ALLUVIAL AQUIFERS,UPPER COLORADO RIVER BASIN,COLORADO, 19971

ABSTRACT: Shallow ground water in areas of increasing urban development within the Upper Colorado River Basin was sampled for inorganic and organic constituents to characterize water‐quality conditions and to identify potential anthropogenic effects resulting from development. In 1997, 25 shallow monitoring wells were installed and sampled in five areas of urban development in Eagle, Grand, Gunnison, and Summit Counties, Colorado. The results of this study indicate that the shallow ground water in the study area is suitable for most uses. Nonparametric statistical methods showed that constituents and parameters measured in the shallow wells were often significantly different between the five developing urban areas. Radon concentrations exceeded the proposed USEPA maximum contaminant level at all sites. The presence of nutrients, pesticides, and volatile organic compounds indicate anthropogenic activities are affecting the shallow ground‐water quality in the study area. Nitrate as N concentrations greater than 2.0 mg/L were observed in ground water recharged between the 1980s and 1990s. Low concentrations of methylene blue active substances were detected at a few sites. Total coliform bacteria were detected at ten sites; however, E. coli was not detected. Continued monitoring is needed to assess the effects of increasing urban development on the shallow ground‐water quality in the study area.     

Building resilience to drought in desertification-prone savannas in Sub-Saharan Africa: The water perspective

Securing sustainable livelihood conditions and reducing the risk of outmigration in savanna ecosystems hosted in the tropical semiarid regions is of fundamental importance for the future of humanity in general. Although precipitation in tropical drylands, or savannas, is generally more significant than one might expect, these regions are subject to considerable rainfall variability which causes frequent periods of water deficiency. This paper addresses the twin problems of “drought and desertification” from a water perspective, focusing on the soil moisture (green water) and plant water uptake deficiencies. It makes a clear distinction between long‐term climate change, meteorological drought, and agricultural droughts and dry spells caused by rainfall variability and land degradation. It then formulates recommendations to better cope with and to build resilience to droughts and dry spells. Coping with desertification requires a new conceptual framework based on green‐blue water resources to identify hydrological opportunities in a sea of constraints. This paper proposes an integrated land/water approach to desertification where ecosystem management supports agricultural development to build social‐ecological resilience to droughts and dry spells. This approach is based on the premise that to combat desertification, focus should shift from reducing trends of land degradation in agricultural systems to water resource management in savannas and to landscape‐wide ecosystem management.     

Influence of Bioenergy Crop Production and Climate Change on Ecosystem Services

Land use change can significantly affect the provision of ecosystem services and the effects could be exacerbated by projected climate change. We quantify ecosystem services of bioenergy‐based land use change and estimate the potential changes of ecosystem services due to climate change projections. We considered 17 bioenergy‐based scenarios with Miscanthus, switchgrass, and corn stover as candidate bioenergy feedstock. Soil and Water Assessment Tool simulations of biomass/grain yield, hydrology, and water quality were used to quantify ecosystem services freshwater provision (FWPI), food (FPI) and fuel provision, erosion regulation (ERI), and flood regulation (FRI). Nine climate projections from Coupled Model Intercomparison Project phase‐3 were used to quantify the potential climate change variability. Overall, ecosystem services of heavily row cropped Wildcat Creek watershed were lower than St. Joseph River watershed which had more forested and perennial pasture lands. The provision of ecosystem services for both study watersheds were improved with bioenergy production scenarios. Miscanthus in marginal lands of Wildcat Creek (9% of total area) increased FWPI by 27% and ERI by 14% and decreased FPI by 12% from the baseline. For St. Joseph watershed, Miscanthus in marginal lands (18% of total area) improved FWPI by 87% and ERI by 23% while decreasing FPI by 46%. The relative impacts of land use change were considerably larger than climate change impacts in this paper. Editor's note : This paper is part of the featured series on SWAT Applications for Emerging Hydrologic and Water Quality Challenges. See the February 2017 issue for the introduction and background to the series.     

A Biological Assessment of Streams in the Eastern United States Using a Predictive Model for Macroinvertebrate Assemblages1

Abstract: A predictive model (RIVPACS‐type) for benthic macroinvertebrates was constructed to assess the biological condition of 1,087 streams sampled throughout the eastern United States from 1993‐2003 as part of the U.S. Geological Survey’s National Water‐Quality Assessment Program. A subset of 338 sites was designated as reference quality, 28 of which were withheld from model calibration and used to independently evaluate model precision and accuracy. The ratio of observed (O) to expected (E) taxa richness was used as a continuous measure of biological condition, and sites with O/E values <0.8 were classified as biologically degraded. Spatiotemporal variability of O/E values was evaluated with repeated annual and within‐site samples at reference sites. Values of O/E were regressed on a measure of urbanization in three regions and compared among streams in different land‐use settings. The model accurately predicted the expected taxa at validation sites with high precision (SD = 0.11). Within‐site spatial variability in O/E values was much larger than annual and among‐site variation at reference sites and was likely caused by environmental differences among sampled reaches. Values of O/E were significantly correlated with basin road density in the Boston, Massachusetts (p < 0.001), Birmingham, Alabama (p = 0.002), and Green Bay, Wisconsin (p = 0.034) metropolitan areas, but the strength of the relations varied among regions. Urban streams were more depleted of taxa than streams in other land‐use settings, but larger networks of riparian forest appeared to mediate biological degradation. Taxa that occurred less frequently than predicted by the model were those known to be generally intolerant of a variety of anthropogenic stressors.     

Effects of Alien Plants on Ecosystem Structure and Functioning and Implications for Restoration: Insights from Three Degraded Sites in South African Fynbos

We investigated the type and extent of degradation at three sites on the Agulhas Plain, South Africa: an old field dominated by the alien grass Pennisetum clandestinum Pers. (kikuyu), an abandoned Eucalyptus plantation, and a natural fynbos community invaded by nitrogen fixing—Australian Acacia species. These forms of degradation are representative of many areas in the region. By identifying the nature and degree of ecosystem degradation we aimed to determine appropriate strategies for restoration in this biodiversity hotspot. Vegetation surveys were conducted at degraded sites and carefully selected reference sites. Soil-stored propagule seed banks and macro- and micro-soil nutrients were determined. Species richness, diversity and native cover under Eucalyptus were extremely low compared to the reference site and alterations of the soil nutrients were the most severe. The cover of indigenous species under Acacia did not differ significantly from that in reference sites, but species richness was lower under Acacia and soils were considerably enriched. Native species richness was much lower in the kikuyu site, but soil nutrient status was similar to the reference site. Removal of the alien species alone may be sufficient to re-initiate ecosystem recovery at the kikuyu site, whereas active restoration is required to restore functioning ecosystems dominated by native species in the Acacia thicket and the Eucalyptus plantation. To restore native plant communities we suggest burning, mulching with sawdust and sowing of native species.     

Depolymerization of polyaromatic hydrocarbons by Penicillium spp. inhabit the phyllosphere of urban ornamental plants

A variety of anthropogenic sources release hazardous polyaromatic hydrocarbons (PAHs) into the phyllosphere which is an excellent niche for diverse fungi, and some of them have PAHs degradation capabilities. Therefore, this research attempted to determine the PAHs (phenanthrene, anthracene, naphthalene, and pyrene) degradation capability of phyllosphere inhabited Penicillium species. The leaf samples were collected from highly polluted urban areas (Panchikawatta, Pettah, Orugodawatta, Maradana, Sapugaskanda, and Colombo Fort) in Sri Lanka to isolate fungal species inhabiting the phyllosphere. Furthermore, their distribution patterns among the leaf tissue layers were studied using bright-field microscopic observations. Moreover, the best PAH degraders were screened out using plate assays and confirmed through High Performance Liquid Chromatography (HPLC) analysis. Further, their enzymatic activities during the PAHs degradation were analyzed. As per the microscopic observations, the highest fungal distribution was in the upper epidermis of the leaves followed by the fungal distribution in the interspaces of palisade mesophyll layers. Out of isolated fungal species, two Penicillium spp. (Penicillium citrinum P₂₃B-91 and Penicillium griseofulvum P₉B - 30) showed the highest PAHs (phenanthrene, anthracene, naphthalene, and pyrene) degradation capabilities. Manganese peroxidase (MnP) enzyme dominated phenanthrene degradation in P. griseofulvum P₉B - 30, which showed the highest phenanthrene degradation ability (61%). In addition, P. citrinum P23B-91 was good at degrading anthracene (88%) and also displayed a higher MnP activity during the anthracene degradation than laccase and lignin peroxidase activities. The discoveries from the toxicity assay during the PAHs degradation processes revealed that the produced byproducts had no toxic effects on the fungal growth cycle and the phyllosphere. Therefore this phyllosphere Penicillium spp. are ideal for the bioremediation of polluted air in urbanized areas.     

TECIIMQUES FOR DETECTING HYDROLOGIC CHANGE IN HIGH RESOURCE STREAMS1

ABSTRACT: A “synthetic paired basin” technique that combines hydrologic monitoring and watershed modeling proves to be a useful tool in detecting hydrologic change in creeks draining basins undergoing urbanization. In this approach, measured stream flow following subbasin treatment (a period of urbanization) is compared with flow from a control subbasin over the same time period. The control subbasin is the pretreatment subbasin itself as represented by a well‐calibrated hydrologic model that is input with post‐treatment meteorological data. The technique is illustrated for stream monitoring sites at the outlets of two high‐resource sub‐basins in the Bear Creek basin of King County, Washington. Application of this technique holds promise to provide earlier warning of cumulative, human impacts on aquatic resources and to better inform adaptive watershed management for resource protection.     

Perceptions of visibility degradation in Hong Kong

The human dimensions of visibility degradation remain under-researched academically. Based on Zube and Sell's Process Model of the Perception of, and Response to, Environmental Change, a questionnaire survey was conducted in Hong Kong between 5 June 2012 and 26 January 2013 (n = 1,203). The respondents’ perceptions towards visibility degradation were collected. The results show that respondents were moderately knowledgeable to visibility degradation, perceiving the problem as anthropogenic and unfavorable and identifying the fight against the degradation as an important environmental issue. It is further deduced that the respondents’ physical and sociocultural attributes, and the way they gain information about visibility degradation, can affect their perceptions of visibility degradation. The results reveal that improving information channels can positively promote human sensitivity to and understanding of visibility degradation in order to mitigate it. Yet, any attempts to educate the lay public should not assume the existence of a homogenous community of like-minded people.     

Environmental Control and Limnological Impacts of a Large Recurrent Spring Bloom in Lake Washington,USA

A series of statistical analyses were used to identify temporal and spatial patterns in the phytoplankton and nutrient dynamics of Lake Washington, an mesotrophic lake in Washington State (USA). These analyses were based on fortnightly or monthly samples of water temperature, Secchi transparency, ammonium (NH₄), nitrate (NO₃), inorganic phosphorus (IP), total nitrogen (TN), total phosphorus (TP), dissolved oxygen (DO), pH and chlorophyll a (chl a) collected during 1995–2000 from 12 stations. Lake Washington has a very consistent and pronounced annual spring diatom bloom which occurs from March to May. During this bloom, epilimnetic chl a concentrations peak on average at 10 μg/L, which is 3 times higher than chl a concentrations typically seen during summer stratified conditions. The spring bloom on average comprised 62% diatoms, 21% chlorophytes and 8% cyanobacteria. During summer stratification, diatoms comprised 26% of the phytoplankton community, chlorophytes 37% and cyanobacteria 25%. Cryptophytes comprised approximately 8% of the community throughout the year. Overall, 6 phytoplankton genera (i.e., Aulacoseira, Fragilaria, Cryptomonas, Asterionella, Stephanodiscus, and Ankistrodesmus) cumulatively accounted for over 50% of the community. These analyses also suggest that the phytoplankton community strongly influences the seasonality of NO₃, IP, DO, pH and water clarity. According to a MANOVA, seasonal fluctuations explained 40% of the total variability for the major parameters, spatial heterogeneity explained 10% of variability, and the seasonal-spatial interaction explained 10% of variability. Distinctive patterns were identified between offshore and inshore sampling stations. The results of our analyses also suggest that spatial variability was substantial, but much smaller than temporal variability.     

Hydrologic Connectivity and the Contribution of Stream Headwaters to Ecological Integrity at Regional Scales1

Abstract: Cumulatively, headwater streams contribute to maintaining hydrologic connectivity and ecosystem integrity at regional scales. Hydrologic connectivity is the water‐mediated transport of matter, energy and organisms within or between elements of the hydrologic cycle. Headwater streams compose over two‐thirds of total stream length in a typical river drainage and directly connect the upland and riparian landscape to the rest of the stream ecosystem. Altering headwater streams, e.g., by channelization, diversion through pipes, impoundment and burial, modifies fluxes between uplands and downstream river segments and eliminates distinctive habitats. The large‐scale ecological effects of altering headwaters are amplified by land uses that alter runoff and nutrient loads to streams, and by widespread dam construction on larger rivers (which frequently leaves free‐flowing upstream portions of river systems essential to sustaining aquatic biodiversity). We discuss three examples of large‐scale consequences of cumulative headwater alteration. Downstream eutrophication and coastal hypoxia result, in part, from agricultural practices that alter headwaters and wetlands while increasing nutrient runoff. Extensive headwater alteration is also expected to lower secondary productivity of river systems by reducing stream‐system length and trophic subsidies to downstream river segments, affecting aquatic communities and terrestrial wildlife that utilize aquatic resources. Reduced viability of freshwater biota may occur with cumulative headwater alteration, including for species that occupy a range of stream sizes but for which headwater streams diversify the network of interconnected populations or enhance survival for particular life stages. Developing a more predictive understanding of ecological patterns that may emerge on regional scales as a result of headwater alterations will require studies focused on components and pathways that connect headwaters to river, coastal and terrestrial ecosystems. Linkages between headwaters and downstream ecosystems cannot be discounted when addressing large‐scale issues such as hypoxia in the Gulf of Mexico and global losses of biodiversity.