Spatial variance in abundance and occupancy of corals across broad geographic scales

Species assemblages vary in structure due to a wide variety of processes operating at ecological and much broader biogeographical scales. Cross-scale studies of assemblage structure are necessary to fully understand this variability. Here, we evaluate the abundance and occupancy patterns of hierarchically sampled coral assemblages in three habitats (reef flat, crest, and slope) and five regions (Indonesia, Papua New Guinea, the Solomon Islands, American Samoa, and the Society Islands) across the west-central Pacific Ocean. Specifically, we compare two alternative models that unify spatial variance and occupancy via the negative binomial distribution. The first assumes a power-law scaling between the mean and variance of abundance; the second assumes a quadratic variance-mean relationship and a constant abundance-invariant aggregation parameter. Surprisingly, the well-established power-law model performs worse than the model assuming abundance-invariant aggregation, for both variance-mean and occupancy-abundance relationships. We also find strong evidence for regional and habitat variation in these relationships and in the levels of aggregation estimated by the abundance-invariant aggregation model. Among habitats, corals on reef flats exhibited lower occupancy and higher levels of aggregation compared to reef crests and slopes. Among regions, low occupancy and high aggregation were most pronounced across all habitats in American Samoa. These patterns may be related to habitat and regional differences in disturbance and recovery processes. Our results suggest that the spatial scaling of abundance and occupancy is sensitive to processes operating among these habitats and at regional scales. However, the consistency of these relationships across species within assemblages suggests that a theoretical unification of spatial variance and occupancy patterns is indeed possible.     

Latitudinal symbiont zonation in <Emphasis Type="Italic">Stylophora pistillata</Emphasis> from southeast Africa

Studies on latitudinal gradients in Symbiodinium diversity on scleractinian corals are largely restricted to warm-water low latitude locations, and it appears that there is a shift in symbiont distributions with increasing latitude. The Symbiodinium assemblages of high latitude coral communities have largely been undocumented despite occupying an important transitional zone between tropical and temperate regions. Using a combination of the internal transcribed spacer region 2 (ITS2) and denaturing gradient gel electrophoresis (DGGE), we assessed the cladal and subcladal variability of Symbiodinium in the widely distributed species Stylophora pistillata along a latitudinal transect in southeast African waters which extended into high latitude locations. All colonies examined belonged to clade C. Six unique ITS2-DGGE banding profiles (designated C_spa to C_spf) were observed, which showed a latitudinal distribution from north to south, most likely a result of a gradient in water temperature and irradiance driven by riverine input in the southern regions. Sequence analysis revealed that all sequences except one did not match previously identified clade C sub-types, probably due to the lack of regional information in the Western Indian Ocean when compared to the Caribbean and Pacific. This study further supports the applicability of ITS2-DGGE in studies on Symbiodinium diversity, and highlights that potentially ecologically informative biogeographic patterns may be overlooked when only cladal designations are employed.     

Surf-zone fish assemblages in south-western Australia: do adjacent nearshore habitats and the warm Leeuwin Current influence the characteristics of the fish fauna?

Nearshore fish faunas from 32 sites along 1500 km coastline of temperate south-western Australia were sampled by seine net between 1991 and 1992 to examine the species composition in sandy surf zones along this region, and to determine whether it is influenced by adjacent nearshore habitats and the warm southward flowing Leeuwin Current. Although the ichthyofauna was diverse, with 95 species from 47 families recorded, it was numerically dominated by only a few species. Species of Atherinidae, Mugilidae, Tetraodontidae, Clupeidae and Pomatomidae, such as Atherinomorus ogilbyi, Leptatherina presbyteroides, Mugil cephalus, Aldrichetta forsteri, Torquigener pleurogramma, Hyperlophus vittatus, Spratelloides robustus and Pomatomus saltatrix, were often common to these surf zones. When the species composition of the surf zones was compared with that found in adjacent nearshore habitats, 38 and 42% of the species were shared with reefs and seagrass beds, respectively, and 22% were present in all three habitats. Classification and ordination demonstrated that the faunal composition on the west coast was distinct from that on the south coast, and within each of these regions there were discrete assemblages. There was a marked decline in the number of species on the south coast, with 20 to 66 species reported from the six west-coast assemblages and 11 to 16 species collected from the four south-coast assemblages. A high proportion of resident species was found in the surf zones on both coasts; however, there was a smaller contribution of transient species on the south coast than on the west coast. This decline in transient species was associated with the absence of tropical species on the latter coast. Benthic invertevores were dominant on both coasts, while trophic diversity decreased and the proportion of zooplanktivores increased on the south coast. These differences in the characteristics of the fish fauna between the two coasts can be related to the presence of seagrass beds and limestone patch reef adjacent to sandy surf-zone areas on the west coast which provide more microhabitats for fish. The presence of inshore limestone reefs along the west coast moderates wave energy, producing more sheltered and temporally stable surf zones. The lower number of species on the south coast can also be attributed to the reduced influence of the Leeuwin Current. This southward flowing current acts as a mechanism for the dispersal of tropical species which display no regular association with the surf zones on the lower west coast.     

Relationship between depth, sediment, latitude, and the structure of benthic infaunal assemblages on the mainland shelf of southern California

A regional benthic survey was conducted in 1994, and the data were used to assess the relationship among three habitat factors (depth, sediment grain size, and latitude) and the distribution of benthic infaunal assemblages on the southern California coastal shelf. Benthic samples were collected with a 0.1 m² Van Veen grab from 251 sites on the continental shelf (10–200 m deep) from Point Conception, California, to the United States–Mexico international border. The relationship between habitat and assemblages was investigated by conducting a Q-mode cluster analysis to define groups of stations with similar species composition and then examining whether differences were present in physical habitat attributes among those groups of stations. Analysis of data from 175 uncontaminated sites yielded four habitat-related benthic infaunal assemblages along the southern California coastal shelf: a shallow-water assemblage from 10–32 m, a mid-depth assemblage between 32 and 115 m, and two deep-water (115–200 m) assemblages, one in fine and one in coarse sediments. These empirically defined points in the depth and sediment grain size gradients can be used to define reference habitats for the development of biocriteria. Benthic abundance and diversity were greatest in the mid-depth assemblage, conforming to predictions for benthic assemblages in regions of upwelling. Within the 500 km of coastline examined, latitude was not an important factor in defining assemblages. Received: 3 December 1999 / Accepted: 9 October 2000     

Spatial variability of infaunal nematode and polychaete assemblages in two muddy subtidal habitats

Spatial variation of populations and their assemblages is an important component of many aspects of ecology, including the maintenance of species diversity. In nature, organisms are generally aggregated in patches or form gradients or other spatially related patterns. This investigation quantified the degree of spatial structure in benthic invertebrate assemblages. It examined the distribution of infaunal assemblages of different size, mobility and contrasting life-history strategies (i.e. meiofaunal nematodes and macrofaunal polychaetes) in two offshore muddy habitats in the Celtic Deep and the NW Irish Sea off the west coast of the United Kingdom. The more heterogeneous habitat in the NW Irish Sea was characterised by higher tidal stress and bottom temperature while greater water depth, mean particle diameter and organic carbon content was typical for the comparatively homogeneous environment in the Celtic Deep. In both habitats, the environmental conditions became increasingly dissimilar with separation. A total of 125 nematode and 88 polychaete species were recorded with 69% of the nematode and 49% of polychaete species present at both study sites. Occurrence frequency of species, species diversity and average similarity of assemblage composition was higher in the Celtic Deep than in the NW Irish Sea. Results from correlation analyses revealed statistically robust relationships of community similarity and sample distance. Given their small size and low mobility, nematodes were more susceptible to within-habitat physical variability than larger-sized, more mobile polychaetes. This, coupled with limits to long-distance dispersal and likely restrictions in gene flow, resulted in a significant decrease in community similarity with distance at the spatial scales sampled (i.e. within 0.1–23 km). Polychaetes, in contrast, combined a higher dispersal potential (>23 km) with a relatively high tolerance to within-habitat environmental variability and these were the most likely causes for non-significant relationships between the similarity of their assemblages and sample distance. The potential mechanisms causing the observed variation and implications of results for environmental management strategies are discussed. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Comparison of light- and SST-based geolocation with satellite telemetry in free-ranging albatrosses

Light-based archival tags are increasingly being used on free-ranging marine vertebrates to study their movements using geolocation estimates. These methods use algorithms that incorporate threshold light techniques to determine longitude and latitude. More recently, researchers have begun using sea surface temperature (SST) to determine latitude in temperate regions. The accuracy and application of these algorithms have not been validated on free-ranging birds. Errors in both geolocation methods were quantified by double-tagging Laysan (Phoebastria immutabilis Rothschild) and black-footed (P. nigripes Audubon) albatrosses with both leg-mounted archival tags that measured SST and ambient light, and satellite transmitters. Laysan albatrosses were captured and released from breeding colonies on Tern Island, northwestern Hawaiian Islands (23°52N, 166°17W) and Guadalupe Island, Mexico (28°31N, 118°10W) and black-footed albatrosses from Tern Island. Studies were carried out between December 2002 and March 2003. For all birds combined, the mean ± SD great circle (GC) distance between light-based locations and satellite-derived locations was 400±298 km (n=131). Errors in geolocation positions were reduced to 202±171 km (n=154) when light-based longitude and SST-based latitude (i.e. SST/light) were used to establish locations. The SST/light method produced comparable results for two Laysan albatross populations that traveled within distinctly different oceanic regions (open ocean vs more coastal) whereas light-based methods produced greater errors in the coastal population. Archival tags deployed on black-footed albatrosses returned a significantly higher proportion of lower-quality locations, which was attributed to interference of the light sensor on the tag. Overall, the results demonstrate that combining measures of light-based longitude and SST-based latitude significantly reduces the error in location estimates for albatrosses and can provide valid latitude estimates during the equinoxes, when light-based latitude measurements are indeterminate.Communicated by J.P. Grassle, New Brunswick     

A comparison of temperate reef fish assemblages recorded by three underwater stereo-video techniques

Three underwater stereo-video techniques were used to sample the relative densities and species richness of temperate reef fish assemblages at three reef locations and two habitats (high- and low-relief reef) within Hamelin Bay, south-western Australia. The three techniques compared were diver-operated stereo-video strip transects, baited remote stereo-video and unbaited remote stereo-video. While unbaited remote stereo-video and diver-operated stereo-video transects recorded greater species richness at high compared to low-relief reefs, baited remote stereo-video recorded similar species richness at the two habitat types. The diver-operated stereo-video system was manoeuvred through caves and under overhangs recording small, cryptic, cave-dwelling species that were not recorded by either remote video techniques (Trachinops noarlungae, Trachinops brauni, Chromis klunzingeri, Trachichthys australis). Both remote video techniques recorded greater species richness and relative density of the most common species of Labridae, Ophthalmolepsis lineolatus. Baited remote video recorded the rarer, large predatory fish species (e.g. Seriola hippos, Glaucosoma hebraicum, Heterodontus portusjacksoni). None of the techniques sampled small cryptic fish families such as Gobiidae or Blenniidae. A combination of survey techniques is recommended for comprehensive fishery-independent studies that aim to sample broad components of fish assemblages.An erratum to this article can be found at     

Some observations on spawning and fecundity in the luminescent fish Photoblepharon palpebratus

Spawning pairs of the fish Photoblepharon palpebratus (Boddaert), a bioluminescent shallow-water species from the Banda Islands, were observed in captivity for the first time. Both female individuals of the two pairs studied were slightly larger than the males, and possessed rounder tail-fin edges, criteria which can be used for sexing. Laboratory and field observations indicate that during several dark nights in April and May one female could produce a total of up to 1,000 sticky, transparent, 1.2-mm diameter, spherical, buoyant eggs, which after a brief planktonic phase of 5 to 10 h continue their development while adhering to a substrate. This short planktonic phase might explain why P. palpebratus only occurs around the Banda Islands, although similar habitats can be found elsewhere in the South Moluccan Sea. In addition to large ripe eggs, two size-classes of immature eggs were found in the ovaries. In the aquarium pairs of P. palpebratus tended to occupy a limited area but did not show aggressive territorial behaviour.     

Histology of the gonads and observations on the social behavior of the Caribbean angelfish Holacanthus tricolor

Male and female specimens of Holacanthus tricolor were collected in May 1981 and September 1982 off the Island of St. Croix. U.S. Virgin Islands, and their gonads were examined histologically. All testes examined showed vasa deferentia which were characteristic of secondary males, suggesting protogynous sex change. A transitional individual supported this interpretation. Ovarian histology and size-specific egg counts revealed seasonal differences in spawning frequency and clutch size. Females appeared to spawn every day in May. The timing of final maturation and hydration of the oocytes indicated that spawning occurred in the late afternoon or early evening. Not all females spawned every day in September, and clutch sizes were smaller than those of May. Behavioral observations of H. tricolor in the field revealed that males defended harems of two to four smaller females. Within each harem, females of different sizes had overlapping home ranges, while the home ranges of females of similar size did not overlap. Besides size dimorphism between the sexes, H. tricolor exhibited a previously unreported sexual dichromatism.     

Intertidal assemblages on artificial and natural habitats in marinas on the north-west coast of Italy

Following the progressive expansion of human populations, the number of artificial habitats is increasing in shallow waters of urbanised coastal areas. The comparison of assemblages between natural and artificial habitats is necessary to determine whether there is real loss and fragmentation of natural habitats. This study investigates the changes in intertidal assemblages caused by marinas for tourists, along exposed rocky shores on the north-west coast of Italy. Marinas, being made of transplanted boulders and by internal wave-sheltered seawalls, introduce different types of artificial habitats in a relatively small area. Intertidal assemblages on breakwaters, seawalls and adjacent rocky shores were compared at three locations, thousands of metres apart. To assess the generality of patterns through time, natural and artificial habitats were sampled at three different times, over a period of about 2 years. Data were analysed by means of multivariate and univariate analyses to test the hypotheses that assemblages and abundances of single taxa differed among habitats, consistently among locations and times of sampling. Furthermore, the variability of assemblages at the scales of tens of centimetres and metres was compared among habitats. Assemblages on seawalls were largely distinct from those on rocky shores or breakwaters. Seawalls, which supported a smaller number of species than breakwaters and rocky shores, were dominated by encrusting algae and lacked common species such as Rissoella verrucosa and Patella rustica. The abundance of main-space occupiers did not differ between breakwaters and rocky shores, but there were differences in variability of assemblages at both the spatial scales investigated. This study provides evidence for differences between intertidal assemblages supported by artificial habitats at marinas and those on adjacent rocky shores. Differences in habitat-structure (and/or wave-exposure in the case of seawalls) could explain the occurrence of distinct intertidal assemblages. Despite the nature and magnitude of these differences, varied according to the type of artificial habitat considered, neither breakwaters nor seawalls could be considered surrogates of rocky shores.Communicated by R. Cattaneo-Vietti, Genova     

Fish assemblages in seagrass beds are influenced by the proximity of mangrove forests

Mangrove forests and seagrass beds frequently occur as adjacent habitats in the temperate waters of southeastern Australia. At low tide when fish cannot occupy mangroves they might utilise adjacent habitats, including seagrass. We first sampled small fish from seagrass beds close to and far from mangroves in the Pittwater estuary, NSW, Australia. Seagrass beds close to mangroves had a greater density of fish species than beds far from mangroves (close: mean 16.0 species net⁻¹, SE 1.0; far: 13.2, 1.3; P < 0.05). In particular, juvenile fish were in greater densities near to than far from mangroves (close: 5.3, 0.4; far: 3.1, 0.4; P < 0.05). We then sampled the mangrove forests during the high tide and seagrass beds during the low tide, in beds along a continuum of distances from mangroves. Multivariate analysis showed that fish assemblages differed with distance from mangroves, and the differences were attributed to the composition of the fish assemblage (i.e. presence/absence of fish species), not the abundances of individual species. In particular, fish that utilise mangrove forests at high tide were found in greater species densities and species richness in seagrass nearer to mangroves. A negative relationship was found between the density of mangrove-utilising fish species and the distance of the bed from mangroves (R ² = 0.37, P < 0.05). This confirms the important connectivity between mangroves and seagrass for fish in temperate Australian waters.     

Intra- and interannual variability in the larval fish assemblage off Gran Canaria (Canary Islands) over 2005–2007

The present study provides the longest and most intensive plankton and larval fish seasonal variability analysis in the Canary Islands and forms a basis for understanding life cycle scheduling and interactions among species, as well as the potential variability in transport processes of early life stages. Larval fish assemblages were studied weekly at Gran Canaria Island, Canary Islands, from January 2005 to June 2007, which represented two contrasting hydrological and biological periods. The former year was characterized by lower temperature and salinity that increased through 2006 and 2007. In contrast, chlorophyll concentration and mesozooplankton biomass decreased through the same period, especially when only the late winter bloom period was evaluated. However, ichthyoplankton abundance did not exhibit any clear pattern, as larger values were observed during 2006. The larval fish community of this oceanic island, located near the NW African upwelling, was composed of both neritic and oceanic taxa. Two families accounted for almost half of the collected larvae: Clupeidae (21.9%) and Myctophidae (20.5%). Although total larval concentration did not exhibit any seasonal peak linked to changes in zooplankton, the ichthyoplankton composition gradually changed during the year due to the high diversity and extended spawning periods of the fish species represented in samples. “Winter” and “summer” larval assemblages were identified, corresponding to the mixing and stratification periods of the water column, respectively. These assemblages were characterized by changes in the contribution of the most abundant annual taxa (Sardinella aurita, Cyclothone braueri, Ceratoscopelus spp. and Gobids) and by the presence of larvae of winter (Pagellus bogaraveo, Pomacentridae sp1) or summer spawners (Pomacentridae sp2, Trachinus draco, Arnoglossus thori, Tetraodontidae sp1). Upwelling filaments shed from the NW African coast reached the sampling area three times during this study, but changes in the local larval community were only detected in August 2005.     

Patterns of mtDNA diversity in North Atlantic populations of the mussel Mytilus edulis

Patterns of (female) mitochondrial DNA diversity were investigated in the blue mussel Mytilus edulis. Mytilus edulis is a ubiquitous member of contemporary North Atlantic hard-substrate communities and well represented in studies of this region. Mytilus edulis was surveyed in North America and Europe, as well as mid-Atlantic sites in Greenland, Iceland, and the Faroe Islands. Mitochondrial DNA sequences revealed considerable population structure but no monophyly of haplotypes between any major regions. Coalescent analyses suggest that migration across the Atlantic Ocean has prominently been from North American source populations and that Greenland was colonized recently and exclusively from North America. In North America, there was support for two regional groups along the North American coastline. Surprisingly, we also found evidence of recombination between some Mytilus edulis and Mytilus galloprovincialis female mtDNA sequences, particularly in northern Europe. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. An erratum to this article can be found at     

Local changes in the composition and community structure of suprabenthic peracarid crustaceans on the bathyal Mediterranean: influence of environmental factors

Deep-water assemblages of suprabenthic peracarids were analyzed in the SW Balearic Islands (Algerian Basin, southwestern Mediterranean) between 249 and 1,622 m depth; the patterns of species composition, possible zonation, and trophic structure found in this area were compared with those exhibited by peracarids in the mainland side of the Catalan Sea slope (northwestern Mediterranean). One hundred and four peracarid species (plus one leptostracan) were identified on the Balearic Islands slope, amphipods being the most diversified taxon (45 species). On the Balearic slope, two distinct depth assemblages were distinguished: one at the upper slope (US), between 249 and 402 m depth and the second at the deep slope, between 543 and 1,620 m depth. A remarkable species substitution occurred at depths between 402 and 638 m. In the Catalan Sea, in addition to the US assemblage occupying depths between 208 and 408 m, a second boundary of faunal change was found around 1,250 m. Suprabenthos biomass increased from 242 to approximately 500 m. Suprabenthos attained the highest biomass values (100 g wet weight/10,000 m²) at intermediate depths between 504 and 1,211 m, as also occurred with the associated zooplankton collected with suprabenthos (peak biomass between 502 m and 898 m). Suprabenthos biomass did not show any significant correlation with any environmental water-column variable. In contrast, zooplankton (especially small fish and decapod crustaceans) showed a significant positive correlation with fluorometry and turbidity at different levels of the water column. The feeding guilds of species showed important differences between the two areas only on the US, with a higher abundance of deposit feeders in the Catalan Sea (20.4%) than in the Balearic Islands (4.2%). The low contribution of deposit feeders in the SW Balearic Islands may ultimately be a consequence of the lack of river discharges in this area.Communicated by S.A. Poulet, Roscoff     

Protection from fishing alters the species composition of fish assemblages in a temperate-tropical transition zone

Closure of areas to fishing is expected to result in an increase in the abundance of targeted species; however, changes to populations of species not targeted by fishermen will depend upon their role in the ecosystem and their relationship with targeted species. The effects of protection on targeted and non-targeted reef fish species at the Houtman Abrolhos Islands, Western Australia were studied using baited remote underwater stereo–video cameras. Video images were collected from shallow (8–12 m) and deep (22–26 m) reef sites inside a Marine Protected Area (MPA) at each of three island groups and from three replicate fished locations at each of these groups that span a temperate-tropical transition area. The MPAs were established in 1994 and vary in size from 13.72 km² at the Pelsaert group in the south to 22.29 km² at the Easter group to 27.44 km² at the Wallabi group in the north. The relative abundances of 137 fish species from 42 families were recorded. Large differences in fish assemblage structure existed between MPA and fished locations, and also between shallow and deep regions. Targeted fish species Plectropomus leopardus, Lethrinus miniatus, Lethrinus nebulosus, Pagrus auratus and Glaucosoma hebraicum were more abundant inside MPAs than in areas open to fishing. Their abundance inside MPAs was between 1.13 and 8 times greater than their abundance at fished locations. For non-targeted fish species many were more abundant in areas open to fishing, e.g. Coris auricularis, Thalassoma lutescens, Thalassoma lunare, Dascyllus trimaculatus, however others were conversely more abundant inside MPAs, e.g. Gymnothorax spp, Kyphosus sydneyanus, Scarus microhinos, Chromis westaustralis, Chaetodon spp. This study demonstrates that the removal of abundant targeted species from an ecosystem by fishing can indirectly impact non-fished species and alter the trophic structure of fish assemblages. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Analysis of the structure of decapod crustacean assemblages off the Catalan coast (North-West Mediterranean)

We sampled the communities of decapod crustaceans inhabiting the depth zone between 3 and 871 m off the Catalan coast (North-West Mediterranean) from June 1981 to June 1983. The 185 samples comprised 90 species differing widely in their depth distributions. Multivariate analysis revealed four distinct faunistic assemblages, (1) littoral communities over sandy bottoms, (2) shelf communities over terrigenous muds, (3) upper-slope communitics, and (4) lower-slope or bathyal communities. The brachyuran crab Liocarcinus depurator is the most abundant species of the shelf assemblage, although L. vernalis dominates over the shallow sandy bottoms of the shelf. The dominant species of the upper-slope assemblage are nektobenthic species (Solenocera membranacea, Plesionika heterocarpus, Processa canaliculata), pelagic species (Pasiphaea sivado, Sergestes arcticus), and benthic species (Macropipus tuberculatus, Munida intermedia, Nephrops norvegicus). Aristeus antennatus comprise most of the biomass of the lower-slope community, which supports a greater diversity than the other assemblages. The main assemblages appear to be related to different hydrological characteristics, the extent of seasonal fluctuations, and to the changes in sediment structure associated with changes in the steepness of the bottom.     

Spatial structure of communities on dead pen shells (<Emphasis Type="Italic">Atrina rigida</Emphasis>) in sea grass beds

Delimiting communities in marine habitats is difficult because co-occurring species often have different life histories and the life stages experience the environment at different spatial scales. The habitat of a particular community is embedded within a larger habitat or ecosystem with many species shared between the focal community and the larger system. Pen shells (Atrina rigida) are large bivalves that, once the mollusk dies, provide shelter for motile species and hard substrate for settling larval invertebrates and egg-laying fishes. In St. Joseph’s Bay, Florida (29°45′N, 85°15′W), pen shells are the most abundant source of hard substrate, especially inside sea grass (Thalassia testudinum) beds, where they reach densities of 0.1–4.0 m⁻². This study, which was conducted from May to August 2005, measured the overlap in species densities between dead pen shells and the surrounding sea grass communities at eight sites to determine the discreteness of the pen shell communities. Of the 70-epibenthic taxa recorded, 66% were found on the pen shells but not in the surrounding sea grass habitat. Community structure, which varied among shells within sites and among the eight sites, could be related to sea grass characteristics such as blade density and length either directly (e.g., inhabitants of pen shells directly benefit from the surrounding sea grass) or indirectly (e.g., pen shells and sea grass both benefit from similar factors such as current and nutrients). Pen shells were randomly distributed at several spatial scales within the 15 × 15 m sites as were many motile species. Two exceptions were the shrimp, Palaemon floridanus and the amphipod, Dulichella appendiculata, whose distributions were clumped. Most of the sessile species had clumped distributions, tending to be very abundant when they were present. These pen shell communities provide an opportunity for experimental studies of factors affecting species diversity on small, discrete, naturally occurring habitats. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The mite (Arachnida: Acari) fauna inhabiting Irish machair: a European Union priority coastal habitat

Machair is a highly specialised and complex sand dune habitat confined globally to the west coasts of Ireland and Scotland. Irish machair is designated as a priority habitat under the EU Habitats Directive, with the habitat coverage restricted to the machair grassland. The main goals of the study were to describe the Acari fauna inhabiting the Irish machair and to determine the uniqueness of its mite communities in the context of habitat protection. Ten Irish machair sites were selected and samples were taken from the machair grassland and from two types of dunes within the wider machair system: shifting dunes (foredunes) occurring at the beach and stable (fixed) dunes located in the transition zone to the inland grassland flat areas. One hundred and eleven mite taxa were recovered. The most widespread was Scutovertex cf arenocolus Pfingstl et al. 2009, a halophilous species that has been found in the epilittoral zone of Baltic and European Atlantic coasts. The genus Autogneta Hull 1916 (Oribatida: Oppiidae) and the oribatid species Hermaniella granulata (Nicolet 1855) were recorded for the first time for Ireland. Peloptulus cf gibbus Mihelčič 1957, may also be a new record. Multivariate analysis showed that community composition varied between the areas sampled in the machair systems and that in the machair grassland, an Annex I priority habitat in Ireland, was especially different from both dune types sampled. The assemblages also varied significantly between the different sites sampled in the study.     

Symbiont specificity and bleaching susceptibility among soft corals in the 1998 Great Barrier Reef mass coral bleaching event

Considerable variability in bleaching was observed within and among soft coral taxa in the order Alcyonacea (Octocorallia: Cnidaria) on the central Great Barrier Reef (GBR, latitude 18.2°–19.0°S, longitude 146.4°–147.3°E) during the 1998 mass coral bleaching event. In April 1998, during a period of high sea surface temperatures, tissue samples were taken from bleached and unbleached colonies representative of 17 soft coral genera. The genetic identities of intracellular dinoflagellates (Symbiodinium spp.) in these samples were analyzed using PCR-denaturing gradient gel electrophoresis fingerprinting analysis of the internal transcribed spacer regions 1 and 2. Alcyonaceans from the GBR exhibited a high level of symbiont specificity for Symbiodinium types mostly in clade C. A rare clade D type (D3) was associated only with Clavularia koellikeri, while Nephthea sp. hosted symbionts in clade B (B1n and B36). Homogenous Symbiodinium clade populations were detected in all but one colony. Colonies that appeared bleached possessed symbiont types that were genetically indistinguishable from those in nonbleached conspecifics. These data suggest that parameters other than the resident endosymbionts such as host identity and colony acclimatization are important in determining bleaching susceptibility among soft corals. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.