Incidence of stress in benthic communities along the U.S. Atlantic and Gulf of Mexico coasts within different ranges of sediment contamination from chemical mixtures

Synoptic data on concentrations of sediment-associated chemical contaminants and benthic macroinfaunal community structure were collected from 1,389 stations in estuaries along the U.S. Atlantic and Gulf of Mexico coasts as part of the nationwide Environmental Monitoring and Assessment Program (EMAP). These data were used to develop an empirical framework for evaluating risks of benthic community-level effects within different ranges of sediment contamination from mixtures of multiple chemicals present at varying concentrations. Sediment contamination was expressed as the mean ratio of individual chemical concentrations relative to corresponding sediment quality guidelines (SQGs), including Effects Range-Median (ERM) and Probable Effects Level (PEL) values. Benthic condition was assessed using diagnostic, multi-metric indices developed for each of three EMAP provinces (Virginian, Carolinian, and Louisianian). Cumulative percentages of stations with a degraded benthic community were plotted against ascending values of the mean ERM and PEL quotients. Based on the observed relationships, mean SQG quotients were divided into four ranges corresponding to either a low, moderate, high, or very high incidence of degraded benthic condition. Results showed that condition of the ambient benthic community provides a reliable and sensitive indicator for evaluating the biological significance of sediment-associated stressors. Mean SQG quotients marking the beginning of the contaminant range associated with the highest incidence of benthic impacts (73–100% of samples, depending on the province and type of SQG) were well below those linked to high risks of sediment toxicity as determined by short-term toxicity tests with single species. Measures of the ambient benthic community reflect the sensitivities of multiple species and life stages to persistent exposures under actual field conditions. Similar results were obtained with preliminary data from the west coast (Puget Sound).     

Environmental Monotoring and Assessment Program: Current Status of Virginian Province (U.S.) Estuaries

Monitoring of indicators of the ecological condition of bays, tidal rivers, and estuaries within the Virginian Biogeographic Province (Cape Cod, Massachusetts to Cape Henry, Virginia) was conducted annually by the U.S. EPA's Environmental Monitoring and Assessment Program (EMAP) during the summer months of 1990 to 1993. Data were collected at 425 probability-based stations within the Province. Indicators monitored included water quality (temperature, salinity, water clarity, and dissolved oxygen concentration), sediment contamination, sediment toxicity, benthic community structure, fish community structure, and fish gross external pathology. Data were used to estimate the current status of the ecological condition of Virginian Province estuarine resources, and provide a baseline for identifying possible future changes. Estimates, with 95% confidence limits, of the areal extent of impacted resources within the Province are provided. Data are also presented by estuarine class (large estuaries, small estuarine systems, and large tidal rivers). Results show that, overall, approximately half of the estuarine waters of the Virginian Province can be classified as impacted based on multiple indicators, with hypoxia being the major stressor.     

An Assessment of the Ecological Condition of Long Island Sound, 1990–1993

Data from the Environmental Protection Agency's (EPA) Environmental Monitoring and Assessment Program (EMAP) from 1990 to 1993 were used to assess the condition of the Long Island Sound (LIS) estuary. Ambient water, sediment and biota were collected during the summer months from 53 LIS stations using an unbiased sampling design. The design consists of two LIS subunits, LIS proper, and small estuaries (<2.6 km2) at the margins of the Sound. Selected indicators of condition included: benthic species composition, abundance and biomass; fish species composition and gross external pathology; sediment physical and chemical characterization and sediment toxicity; and water clarity and quality. Results of the four-year sampling indicated that 28(±11)% of the areal extent of LIS proper had a benthic index < zero (impacted) and 51(±12)% of the area of small estuaries was impacted. Analysis of the results of other indicators also shows that small estuaries were particularly affected. For example, 42(±10)% of the areal extent of small estuaries exhibited sediment toxicity, and significant chemical contamination was evident in 22% of the area of small estuaries. Low dissolved oxygen (D.O.) concentrations (<5 ppm), however, appeared to affect only the deeper open waters of western LIS. Approximately 48(±12)% of the areal extent of LIS proper documented exposure to at least moderate D.O. stress (<5 ppm). The overall results of this monitoring study indicate that significant anthropogenic impacts have occurred in LIS and that if remediation was to take place, specific localized sediment problems would need attention. Point source and non-point source nutrient inputs to the Sound, which are believed to be the primary causative factor for the observed hypoxic conditions, would also need attention.     

Determining the Causes of Benthic Condition

A benthic index for northern Gulf of Mexico estuaries has been developed and successfully validated by the Environmental Monitoring and Assessment Program for Estuaries (EMAP-E) in the Louisianian Province. The benthic index is a useful and valid indicator of estuarine condition that is intended to provide environmental managers with a simple tool for assessing the ecological condition of benthic macroinvertebrate communities. Associations between the benthic index and indicators of hypoxia, sediment contamination, and sediment toxicity were investigated to determine the most probable cause(s) of degraded benthic condition. The results showed that, on a local scale, the associations between the benthic index and potential environmental causes differed among estuaries. In Pensacola Bay, FL, for example, there was a significant association between the levels of toxic chemicals (e.g. DDT, silver, and TBT) in the sediment and the benthic index, especially in the bayous which have known sediment contamination problems. In Mobile Bay, however, degraded benthic communities were more closely associated with eutrophication and hypoxia. Nevertheless, a benthic index is a valuable tool for identifying areas that could be already degraded and tracking the status of environmental condition in large geographical regions.     

Spatial Extent Of Degraded Sediment Quality In Puget Sound (Washington State, U.S.A.) Based Upon Measures Of The Sediment Quality Triad

A survey was designed and conducted to determine the severity, spatial patterns, and spatial extent of degraded sediment quality in Puget Sound (Washington State, USA). A weight of evidence compiled from results of chemical analyses, toxicity tests, and benthic infaunal analyses was used to classify the quality of sediments. Sediment samples were collected from 300 locations within a 2363 km² area extending from the US/Canada border to the inlets of southern Puget Sound and Hood Canal. Degraded conditions, as indicated with a combination of high chemical concentrations, significant toxicity, and adversely altered benthos, occurred in samples that represented about 1% of the total area. These conditions invariably occurred in samples collected within urbanized bays and industrial waterways, especially near the urban centers of Everett, Seattle, Tacoma, and Bremerton. Sediments with high quality (as indicated by no toxicity, no contamination, and the presence of a relatively abundant and diverse infauna) occurred in samples that represented a majority (68%) of the total study area. Sediments in which results of the three kinds of analyses were not in agreement were classified as intermediate in quality and represented about 31% of the total area. Relative to many other estuaries and marine bays of the USA, Puget Sound sediments ranked among those with minimal evidence of toxicant-induced degradation.     

The ecological condition of south Florida estuaries

An assessment of the ecological condition ofsouth Florida estuaries based on regional probabilisticmonitoring was conducted during the summer of 1995. Samples anddata were collected on water and sediment quality, benthos, andfish tissue contaminants. Elevated concentrations of metals andpesticides were measured in both sediments and fish tissue withsome exceedances of guidance values. Bottom dissolved oxygenlevels over 23–37% of the area were below state criteria. Eighty-eight percent of surface waters had greater than10% penetration of ambient light to a depth of 1.0 m. Ninepercent of the area studied in South Florida exhibited degradedbiology and impaired use based on a calculated index ofecological condition. Using the probability-based monitoringdesign, useful information of this type can be provided toresource managers regarding estuarine condition on a regional scale.     

Empirical assessment of incorporating sediment quality triad data into a single index to distinguish dominant stressors between sites

Benthic infaunal community structure, sediment contamination, and sediment toxicity data (Sediment Quality Triad) were condensed into a single index based on the area of tri-axial plots, which were examined in relation to various habitat parameters. The purpose was to assess its utility for evaluating the relative impact of contaminants versus other stressors on benthic communities. The regression relationship between the areal index and the Effects Range?CMedian quotient (ERMq) was used to separate contaminant-impacted sites from sites impacted by hypoxia in Chesapeake Bay. Regression using the areal index and bottom oxygen confirm the utility of the approach. Data from Delaware, Galveston, and Biscayne Bays were also examined to determine if the approach may be effective in other estuaries.     

Spatial Extent of Sediment Toxicity in U.S. Estuaries and Marine Bays

Acute, laboratory toxicity tests were performed by the National Oceanic and Atmospheric Administration (NOAA) on 1543 surficial sediment samples collected during 1991 through 1997 throughout 25 estuaries and marine bays. Selected areas were sampled along the Atlantic, Gulf of Mexico, and Pacific coasts. The toxicity of each sample was determined with 10-day amphipod survival tests performed with solid-phase (bulk) sediments. Collectively, the 1543 samples tested through 1997 represented a total area of approximately 7300 km². Toxicity was observed with the amphipod survival tests in samples that represented approximately 6% of the combined area. Using similar tests conducted on samples collected in different, but overlapping, study areas, the U.S. Environmental Protection Agency (EPA) estimated that approximately 7% of the combined estuarine area sampled was toxic. Generally, toxicity was most severe in northeastern and southwestern estuaries and least prevalent in southeastern and northwestern areas. However, considerable portions of the Pacific coast have not been tested with the same methods. In tests of CYP1A enzyme induction (n=464), samples were toxic that represented about 5% of the combined study areas. Toxicity was much more widespread, however, when the results of two sub-lethal tests were analyzed. Significant results occurred in samples that represented approximately 25% and 39% of the study areas in tests of sea urchin fertilization (n=1309) and microbial bioluminescence (n=1215), respectively.     

Estimating the Ecological Condition of the Estuaries of the Gulf of Mexico

Monitoring of estuaries in the Louisianian Province was performed annually from 1991–1994 to assess ecological conditions on a regional scale. We found over the four years of monitoring, 25±6% of Gulf of Mexico estuarine sediments in the Louisianian Province displayed poor biological conditions, as measured by benthic community structure, and 14±7% of the area was characterized by poor water clarity, the presence of marine debris, and elevated levels of fish tissue contaminants. Using statistical associations to discern relationships between ecological condition and exposure or stressor data has shown that much of this degraded' condition co-occurs with sediment contamination.     

Habitat Conditions and Correlations of Sediment Quality Triad Indicators in Delaware Bay

This paper summarizes sampling results from NOAA's National Status and Trends (NS&T) Program for marine environmental quality in Delaware Bay. A stratified-random design was used to determine the spatial extent of sediment contamination and toxicity in Delaware Bay from offshore stations in the coastal zone, the lower estuary, the upper estuary, the fresh/salt mixing zone, and tidal fresh areas. Sediment samples were taken for chemical analyses of major classes of environmental contaminants, a suite of toxicity bioassays, and benthic macrofaunal community assessment to identify patterns of resident species. The tidal-fresh areas and portions of the mixing zone of the study area were heavily contaminated. Contaminant concentrations were frequently above the 90th percentile of EMAP Virginian Province levels. PAHs in the sediment were higher than previously documented, with a major component of PAHs being pyrogenic in origin. Bioassay results were highly variable. Toxicity and contaminant levels were correlated when aggregated into indices, but were only marginally correlated with benthic community impacts. High and low abundance stations were found in all zones. Most of the tidal fresh stations were dominated by pollution tolerant species. Species diversity and abundance were generally lowest in the fresh/salt mixing zone.     

Using Information on Spatial Variability of Small Estuaries in Designing Large-Scale Estuarine Monitoring Programs

In the early 1990s, EPA's Environmental Monitoring and Assessment Program (EMAP) documented the ecological condition of the overall population of small estuaries along the mid-Atlantic coast of the United States. However, the Program did not provide detailed information on the condition of individual estuaries less than 260 km² in surface area, a group of estuaries of concern to environmental managers. To address the needs of environmental managers, when EMAP returned to the region in summer 1997, it included a study of the spatial variability of ecological indicators within individual small estuaries. At 127 probability-based sites in 10 estuaries, EMAP measured a variety of parameters of water quality and sediments, including dissolved oxygen (DO), nutrients, grain size of sediments, contaminants in sediments, and community structures of benthic macroinvertebrates. From this information the ecological condition (e.g., percent area with DO concentrations below 5mg L^–1) for each estuary, along with 90% confidence interval, was determined. The width of the confidence interval was then recalculated for sample sizes ranging from two stations to the total number of stations sampled in that estuary. Confidence interval widths were then plotted against sample size. These plots can be useful in designing future regional monitoring programs with a goal of describing conditions in individual systems as well as broad geographic regions. Results illustrate that beyond five stations per estuary, the reduction in the width of the confidence interval with increasing sampling intensity is relatively small; however, individual program managers need to determine "how small is small enough."     

The Ecological Condition of Veracruz, Mexico Estuaries

During June and July, 2002, forty-seven stations were sampled within estuaries along the gulf coast of the state of Veracruz, MX, using a probabilistic survey design and a common set of response indicators. The objective of the study was to collect information to assess the condition of estuarine waters within the state of Veracruz, and to provide data that would strengthen future assessments of Gulf of Mexico estuaries. Samples for water quality, sediment contaminants, sediment toxicity, and benthic populations were collected in a manner consistent with EPA’s National Coastal Assessment (NCA). Data were evaluated by comparing indicator measurements to tropical waters threshold values cited in US EPA’s National Coastal Condition Report II, 2004, for tropical waters. In Veracruz, 75% of the area sampled rated poor for water quality, attributed primarily to high concentrations reported for chlorophyll a, and dissolved nutrients. One percent of the area exhibited poor sediment quality, based on PAH and metals concentrations. Compared to US estuaries of the Gulf of Mexico, water quality observed in Veracruz estuaries was more affected by nutrient over-enrichment. The probabilitistic nature of the survey design allowed for the comparison of the condition of Veracruz and the US GOM estuaries.     

Ecosystem Responses to Extreme Natural Events: Impacts of Three Sequential Hurricanes in Fall 1999 on Sediment Quality and Condition of Benthic Fauna in the Neuse River Estuary, North Carolina

A study was conducted in November 1999 to assess sediment quality and condition of benthic fauna in the Neuse River Estuary (NRE), North Carolina, USA, following the passage of three Atlantic hurricanes during the two months prior. Samples for analysis of macroinfauna (>0.5 mm sieve size), chemical contamination of sediments, and other abiotic environmental variables (salinity, dissolved oxygen, pH, depth, sediment granulometry) were collected at 20 sites from the mouth of the Neuse River at Pamlico Sound to approximately 90 km upstream. Results were compared to those obtained from the same area in July 1998 using similar protocols. Depressed salinity, caused by extreme rainfall and associated high freshwater flow, persisted throughout much of the estuary, which had experienced periods of water-column stratification and hypoxia of underlying waters. Fifteen of the 20 sites, representing 299 km² (76% of the survey area), also showed signs of benthic stress based on a multi-metric benthic index of biotic integrity (B-IBI). Benthic impacts included reductions in the abundance, diversity, and numbers of species and shifts in taxonomic composition, with a notable increase in dominance of the opportunistic polychaete Mediomastus ambiseta as other former dominant species declined. There was no significant increase in the extent of chemical contamination compared to pre-hurricane conditions. Storm-related reductions in dissoved oxygen and salinity were the more likely causes of the observed benthic impacts, though it was not possible, based on these results, to separate storm effects from seasonal changes in the benthos and annual episodes of summer anoxia and hypoxia.     

Seed Clam Growth: An Alternative Sediment Bioassay Developed During EMAP in the Carolinian Province

A new sediment bioassay was developed in conjunction with EMAP studies conducted in the Carolinian Province using juvenile seed clams, Mercenaria mercenaria. This is a sublethal assay, based on growth (total dry weight) after a 7 day incubation period. Seed clam chronic growth assays were significantly more sensitive than amphipod acute toxicity assays. Optimization components include use of hatchery-reared juvenile clams in a rapid growth phase, and size-sieving to ensure a similar size range. Juvenile clam growth was not affected by sediment type, i.e., clams grew well in muddy and sandy sediments. Clams were slightly more sensitive to ammonia than amphipods (NOEC porewater total ammonia 14 - 16 mg/L for clams). Ammonia concentrations above these levels were more common in reference sites, so most of the false positives could be explained by ammonia toxicity. This assay possesses a number of other positive attributes that are desirable for a bioassay, including the requirement for a relatively small sample size (500 ml of sediments), balanced sensitivity, low incremental costs, and high information gained. The seed clam assay is believed to be a valuable tool for EMAP as well as other monitoring efforts for estimating potential chronic toxicity.     

Sediment quality in the Douro river estuary based on trace metal contents, macrobenthic community and elutriate sediment toxicity test (ESTT)

The aim of this study was to evaluate the sediment quality in the mesotidal Douro River estuarine environment, in order to identify areas where sediment contamination could cause ecosystem degradation. Samples were obtained in five locations and sediment characterised for grain size, total organic matter, total-recoverable metals (Al, Fe, Cu, Pb, Cr, Ni, Cd, Zn and Mn), as well as acid volatile sulfide (AVS) and simultaneously extracted metals (SEM). In situ effects were evaluated by examining the macrobenthic community structure. An elutriate sediment toxicity test (ESTT) was used to estimate the amount of metals and nutrients that could be exchanged with the water column through resuspension, and its positive or negative effects on the growth of the micro-alga Emiliania huxleyi in a 10 day test. Anthropogenic metal contamination was identified at the north bank of the Douro estuary, with deleterious effects on the macrobenthic community, namely decrease in number of species and diversity. This contamination could possibly also be toxic for water column organisms, in case of resuspension, as shown by the ESTT. Sediments from the salt marsh at the south bank showed an impoverished macrobenthic community and elutriate toxicity, which appeared to be due to anaerobic conditions. This study clearly shows the usefulness of the ESST approach to assess the biological effect of resuspension of estuarine sediments.     

Environmental Monitoring and Assessment of a Great River Ecosystem: The Upper Missouri River Pilot

Most Great River ecosystems (GREs) are extensively modified and are not receiving adequate protection to prevent further habitat degradation and loss of biotic integrity. In the United States, ecological monitoring and assessment of GREs has lagged behind streams and estuaries, and the management of GREs is hampered by the lack of unbiased data at appropriate spatial scales. Properties of GREs that make them challenging to monitor and assess include difficult sample logistics and high habitat diversity. The U.S. Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP) has developed a comprehensive, regional-scale, survey-based monitoring approach to assessment of streams and estuaries, but has not yet conducted research on applying these tools to GRE monitoring. In this paper we present an overview of an EMAP research project on the Upper Missouri River (UMR). We summarize the assessment objectives for the study, the design for selecting sample locations, the indicators measured at these sites and the tools used to analyze data. We present an example of the type of statements that can be made with EMAP monitoring data. With modification, the set of methodologies developed by EMAP may be well suited for assessment of GREs in general.     

A Classification of U.S. Estuaries Based on Physical and Hydrologic Attributes

A classification of U.S. estuaries is presented based on estuarine characteristics that have been identified as important for quantifying stressor-response relationships in coastal systems. Estuaries within a class have similar physical and hydrologic characteristics and would be expected to demonstrate similar biological responses to stressor loads from the adjacent watersheds. Nine classes of estuaries were identified by applying cluster analysis to a database for 138 U.S. estuarine drainage areas. The database included physical measures of estuarine areas, depth and volume, as well as hydrologic parameters (i.e., tide height, tidal prism volume, freshwater inflow rates, salinity, and temperature). The ability of an estuary to dilute or flush pollutants can be estimated using physical and hydrologic properties such as volume, bathymetry, freshwater inflow and tidal exchange rates which influence residence time and affect pollutant loading rates. Thus, physical and hydrologic characteristics can be used to estimate the susceptibility of estuaries to pollutant effects. This classification of estuaries can be used by natural resource managers to describe and inventory coastal systems, understand stressor impacts, predict which systems are most sensitive to stressors, and manage and protect coastal resources.     

Maryland Biological Stream Survey: Development of a Fish Index of Biotic Integrity

As a step towards determining the extent of degradation in non-tidal streams, a multi-metric Index of Biotic Integrity (IBI) based on fish assemblages was developed for the Maryland Biological Stream Survey (MBSS). The MBSS is a probability-based statewide sampling program designed to assess the status of biological resources and to evaluate the effects of anthropogenic activities. We used data from 419 MBSS sites sampled in 1994-95 to develop the IBI. Two distinct geographic strata, corresponding with ecoregional and physiographic boundaries, were identified via cluster analysis and multivariate analysis of variance (MANOVA) as supporting distinctly different species groups. Reference conditions were based on minimally degraded sites. We quantitatively evaluated the ability of various attributes of the fish assemblage (candidate metrics) to discriminate between these reference sites and sites known to be degraded, using statistical tests and classification efficiency. Provisional formulations of the IBI were selected for each region based on high classification efficiency and broad representation of fish assemblage attributes. Fish IBI scores for 1995 MBSS sites spanned a wide range of biological conditions, from good to very poor. Over all six basins sampled in 1995, half of the stream miles fell into the range of good to fair. Roughly 25% of stream miles showed some degradation. The IBI will be used in conjunction with physical and chemical data to answer critical questions about the health of Maryland streams and the relative impacts of human-induced stresses on the state's aquatic systems.     

An approach for identifying the causes of benthic degradation in Chesapeake Bay

We developed an index to differentiate between low dissolved oxygen effects and sediment contamination effects for sites classified as degraded by the Chesapeake Bay Benthic Index of Biotic Integrity (B-IBI), using discriminant analysis. We tested 126 metrics for differences between sites with low dissolved oxygen and sites with contaminated sediments. A total of 16 benthic community metrics met the variable selection criteria and were used to develop a discriminant function that classified degraded sites into one of two stress groups. The resulting discriminant function correctly classified 77% of the low dissolved oxygen sites and 80% of the contaminated sites in the validation data.     

Using the Sediment Quality Triad to characterize baseline conditions in the Anacostia River, Washington, DC, USA

The Sediment Quality Triad (SQT) consists of complementary measures of sediment chemistry, benthic community structure, and sediment toxicity. We applied the SQT at 20 stations in the tidal portion of the Anacostia River from Bladensburg, MD to Washington, DC to establish a baseline of conditions to evaluate the effects of management actions. Sediment toxicity was assessed using 10-day survival and growth tests with the freshwater amphipod, Hyalella azteca and the midge, Chironomus dilutus. Triplicate grabs were taken at each station for benthic community analysis and the Benthic Index of Biotic Integrity (B-IBI) was used to interpret the data. Only one station, #92, exhibited toxicity related to sediment contamination. Sediments from this station significantly inhibited growth of both test species, had the highest concentrations of contaminants, and had a degraded benthic community, indicated by a B-IBI of less than 3. Additional sediment from this station was tested and sediment toxicity identification evaluation (TIE) procedures tentatively characterized organic compounds as the cause of toxicity. Overall, forty percent of the stations were classified as degraded by the B-IBI. However, qualitative and quantitative comparisons with sediment quality benchmarks indicated no clear relationship between benthic community health and contaminant concentrations. This study provides a baseline for assessing the effectiveness of management actions in the Anacostia River.