Characterizing Coral Condition Using Estimates of Three-dimensional Colony Surface Area

Coral reefs provide shoreline protection, biological diversity, fishery harvests, and tourism, all values that stem from the physically-complex coral infrastructure. Stony corals (scleractinians) construct and maintain the reef through deposition of calcium carbonate. Therefore, assessment of coral reefs requires at least some measurement endpoints that reflect the biological and physical condition of stony corals. Most monitoring programs portray coral quantity as live coral cover, which is the two-dimensional proportion of coral surface to sea floor viewed from above (planar view). The absence of the third dimension, however, limits our ability to characterize coral reef value, physiology, health and sustainability. A three-dimensional (3D) approach more realistically characterizes coral structure available as community habitat and, when combined with estimates of live coral tissue, quantifies the amount of living coral available for photosynthesis, growth and reproduction. A rapid coral survey procedure that coupled 3D coral quantification with more traditional survey measurements was developed and tested in the field. The survey procedure relied on only three underwater observations – species identification, colony size, and proportion of live tissue – made on each colony in the transect. These observations generated a variety of metrics, including several based on 3D colony surface area, that are relevant to reef management.     

Coral communities of the remote atoll reefs in the Nansha Islands, southern South China Sea

During the months of May and June in the year 2007, a survey was conducted regarding coral reef communities in the remote atolls (Zhubi Reef and Meiji Reef) of Nansha Islands, southern South China Sea. The goals of the survey were to: (1) for the first time, compile a scleractinian coral check-list; (2) estimate the total richness, coral cover, and growth forms of the community; and (3) describe preliminary patterns of community structure according to geomorphological units. Findings of this survey revealed a total of 120 species of scleractinia belonging to 40 genera, while the average coral cover was 21 %, ranging from less than 10 % to higher than 50 %. Branching and massive corals were also found to be the most important growth forms of the whole coral community, while Acropora, Montipora, and Porites were the three dominant genera in the overall region, with their contributions to total coral cover measuring 21, 22, and 23 %, respectively. Overall, coral communities of the Nansha Islands were in a relative healthy condition with high species diversity and coral cover. Spatial pattern of coral communities existed among various geomorphological units. Mean coral cover was highest in the patch reef within the lagoon, followed by the fore reef slope, reef flat, and lagoon slope. The greatest contributors to total coral cover were branching Acropora (45 %) in the lagoon slope, branching Montipora (44 %) in the reef flat, and massive Porites (51 %) in the patch reef. Coral cover in the fore reef revealed a greater range of genera than in other habitats. The leeward fore reef slope had higher coral cover (>50 %) when compared with the windward slope (<10 %). The coral communities of the inner reef flat were characterized by higher coral cover (27 %) and dominant branching Montipora corals, while lower coral cover (4 %) was dominated by Psammocora with massive growth forms on the outer reef flat. Destructive fishing and coral bleaching were two major threats to coral communities in the study area.     

The condition of coral reefs in South Florida (2000) using coral disease and bleaching as indicators

The destruction of coral reef habitats has occurred at unprecedented levels during the last three decades. Coral disease and bleaching in the Caribbean and South Florida have caused extensive coral mortality with limited recovery, often coral reefs are being replaced with turf algae. Acroporids were once dominant corals and have diminished to the state where they are being considered as endangered species. Our survey assessed the condition of reef corals throughout South Florida. A probability-based design produced unbiased estimates of the spatial extent of ecological condition, measured as the absence or presence and frequency or prevalence of coral diseases and bleaching intensity over large geographic regions. This approach allowed us to calculate a quantifiable level of uncertainty. Coral condition was estimated for 4100 hectares (ha) (or 41.0 km²) of coral reefs in South Florida, including reefs in the Florida Keys National Marine Sanctuary (FKNMS), New Grounds, Dry Tortugas National Park (DTNP), and Biscayne National Park (BNP). The absence or presence of coral disease, causal coral bleaching, partial bleaching and coral paling were not good indicators of overall coral condition. It was more useful to report the prevalence of anomalies that indicated a compromised condition at both the population and community levels. For example, 79% of the area in South Florida had less than 6% of the coral colonies diseased, whereas only 2.2% (97.15 ha) of the sampled area had a maximum prevalence of 13% diseased coral colonies at any single location. The usefulness of causal bleaching might be more important when considering the prevalence of each of the three different states at a single location. For example, paling was observed over the entire area, whereas bleaching and partial bleaching occurred at 19 and 41% of the area, respectively. An index for coral reef condition might integrate the prevalence and species affected by each bleaching state at individual locations. By establishing these baselines, future surveys can examine changes and trends in the spatial distribution of coral conditions in South Florida and able to score the reefs as to their health status.     

Using underwater cameras to assess the effects of snorkeler and SCUBA diver presence on coral reef fish abundance, family richness, and species composition

The results of underwater visual fish censuses (UVC) could be affected by fish changing their behavior in response to the snorkeler or diver conducting the survey. We used an underwater video camera to assess how fish abundance, family richness, and community composition were affected by the presence of snorkelers (n?=?12) and self-contained underwater breathing apparatus (SCUBA) divers (n?=?6) on a coral reef in Thailand. The total number of families, abundance of some fish families, and overall species composition showed significant differences before and during snorkeling disturbances. We did not detect significant and consistent changes to these parameters in the presence of a SCUBA diver; however, this could be a result of lower statistical power. We suggest that the use of a stationary video camera may help cross-check data that is collected through UVC to assess the true family composition and document the presence of rare and easily disturbed species.     

Community structure and coral status across reef fishing intensity gradients in Palk Bay reef,southeast coast of India

Coral reef fishes are exploited without the knowledge of their sustainability and their possible effect in altering the community structure of a coral reef ecosystem. Alteration of the community structure could cause a decline in the health of coral reefs and its services. We documented the coral community structure, status of live corals and reef fish assemblages in Palk Bay at the reef fishing hotspots and its nearby reef area with minimum fishing pressure and compared it with a control reef area where reef fishing was banned for more than two decades. The comparison was based on the percent cover of different forms of live corals, their diversity and the density and diversity of reef fishes. The reef fish stock in the reef fishing hotspots and its neighbouring reef was lower by 61 and 38 %, respectively compared to the control reef. The herbivore fish Scarus ghobban and Siganus javus were exploited at a rate of 250 and 105 kg month^?1 fishermen^?1, respectively, relatively high comparing the small reef area. Live and dead corals colonized by turf algae were predominant in both the reef fishing hotspots and its nearby coral ecosystems. The percent cover of healthy live corals and live corals colonized by turf algae was <10 and >80 %, respectively, in the intensively fished coral ecosystems. The corals were less diverse and the massive Porites and Favia colonies were abundant in the intensive reef fishing sites. Results of this study suggest that the impact of reef fish exploitation was not solely restricted to the intensively fished reefs, but also to the nearby reefs which play a critical role in the resilience of degraded reef ecosystems.     

Using Aerial Video to Train the Supervised Classification of Landsat Tm Imagery for Coral Reef Habitats Mapping

Management of coral reef resources is a challenging task, in many cases, because of the scarcity or inexistence of accurate sources of information and maps. Remote sensing is a not intrusive, but powerful tool, which has been successfully used for the assessment and mapping of natural resources in coral reef areas. In this study we utilized GIS to combine Landsat TM imagery, aerial photography, aerial video and a digital bathymetric model, to assess and to map submerged habitats for Alacranes reef, Yucatán, México. Our main goal was testing the potential of aerial video as the source of data to produce training areas for the supervised classification of Landsat TM imagery. Submerged habitats were ecologically characterized by using a hierarchical classification of field data. Habitats were identified on an overlaid image, consisting of the three types of remote sensing products and the bathymetric model. Pixels representing those habitats were selected as training areas by using GIS tools. Training areas were used to classify the Landsat TM bands 1, 2 and 3 and the bathymetric model by using a maximum likelihood algorithm. The resulting thematic map was compared against field data classification to improve habitats definition. Contextual editing and reclassification were used to obtain the final thematic map with an overall accuracy of 77%. Analysis of aerial video by a specialist in coral reef ecology was found to be a suitable source of information to produce training areas for the supervised classification of Landsat TM imagery in coral reefs at a coarse scale.     

Rapid survey protocol that provides dynamic information on reef condition to managers of the Great Barrier Reef

Managing to support coral reef resilience as the climate changes requires strategic and responsive actions that reduce anthropogenic stress. Managers can only target and tailor these actions if they regularly receive information on system condition and impact severity. In large coral reef areas like the Great Barrier Reef Marine Park (GBRMP), acquiring condition and impact data with good spatial and temporal coverage requires using a large network of observers. Here, we describe the result of ~10 years of evolving and refining participatory monitoring programs used in the GBR that have rangers, tourism operators and members of the public as observers. Participants complete Reef Health and Impact Surveys (RHIS) using a protocol that meets coral reef managers’ needs for up-to-date information on the following: benthic community composition, reef condition and impacts including coral diseases, damage, predation and the presence of rubbish. Training programs ensure that the information gathered is sufficiently precise to inform management decisions. Participants regularly report because the demands of the survey methodology have been matched to their time availability. Undertaking the RHIS protocol we describe involves three ~20 min surveys at each site. Participants enter data into an online data management system that can create reports for managers and participants within minutes of data being submitted. Since 2009, 211 participants have completed a total of more than 10,415 surveys at more than 625 different reefs. The two-way exchange of information between managers and participants increases the capacity to manage reefs adaptively, meets education and outreach objectives and can increase stewardship. The general approach used and the survey methodology are both sufficiently adaptable to be used in all reef regions.     

Probability sampling of stony coral populations in the Florida Keys

Principles of probability survey design were applied to guide large-scale sampling of populations of stony corals and associated benthic taxa in the Florida Keys coral reef ecosystem. The survey employed a two-stage stratified random sampling design that partitioned the 251-km(2) domain by reef habitat types, geographic regions, and management zones. Estimates of the coefficient of variation (ratio of standard error to the mean) for stony coral population density and abundance ranged from 7% to 12% for four of six principal species. These levels of survey precision are among the highest reported for comparable surveys of marine species. Relatively precise estimates were also obtained for octocoral density, sponge frequency of occurrence, and benthic cover of algae and invertebrates. Probabilistic survey design techniques provided a robust framework for estimating population-level metrics and optimizing sampling efficiency.     

Assessing the Effects of Non-Point Source Pollution on American Samoa’s Coral Reef Communities

Surveys were completed on Tutuila Island, American Samoa, to characterize reef development and assess the impacts of non-point source pollution on adjacent coral reefs at six sites. Multivariate analyses of benthic and coral community data found similar modern reef development at three locations; Aoa, Alofau, and Leone. These sites are situated in isolated bays with gentle sloping foundations. Aoa reefs had the highest estimates of crustose coralline algae cover and coral species richness, while Leone and Alofau showed high abundances of macroalgae and Porites corals. Aoa has the largest reef flat between watershed discharge and the reef slope, and the lowest human population density. Masefau and Fagaalu have a different geomorphology consisting of cemented staghorn coral fragments and steep slopes, however, benthic and coral communities were not similar. Benthic data suggest Fagaalu is heavily impacted compared with all other sites. Reef communities were assessed as bio-criteria indicators for waterbody health, using the EPA aquatic life use support designations of (1) fully supportive, (2) partially supportive, and (3) non-supportive for aquatic life. All sites resulted in a partially supportive ranking except Fagaalu, which was non-supportive. The results of this rapid assessment based upon relative benthic community measures are less desirable than long-term dataset analyses from monitoring programs, however it fills an important role for regulatory agencies required to report annual waterbody assessments. Future monitoring sites should be established to increase the number of replicates within each geological and physical setting to allow for meaningful comparisons along a gradient of hypothesized pollution levels.     

Temporal variation in a coral reef community at Pattaya Bay,Gulf of Thailand

Changes in the fringing coral reef community of a small island (Ko Nok) at Pattaya Bay, Gulf of Thailand, were examined at the beginning and at the end of a 3-year period using 7m×7m permanent quadrats for benthic organisms, and visual census along 100m transects for fish. The coral community was dominated by Porites lutea in terms of colony number and areal cover throughout the period. Variations in the community structure parameters on opposite sides of the island indicated increasing dissimilarity with time. Little variation in live coral cover was noted, but colony number and species diversity declined on both sides. The abundance of edible fish species dropped while that of non-edible species increased over the 3-year period, indicating selective removal of the former category through fishing. Impacts from both human and natural influences are implicated in these changes.     

Methods to estimate solar radiation dosimetry in coral reefs using remote sensed, modeled, and in situ data

Solar irradiance has been increasingly recognized as an important determinant of bleaching in coral reefs, but measurements of solar radiation exposure within coral reefs have been relatively limited. Solar radiation dosimetry within multiple coral reef areas of South Florida was assessed using remote sensed, modeled, and measured values during a minor bleaching event during August 2005. Coral reefs in the Dry Tortugas and Upper Keys had similar diffuse downwelling attenuation coefficients (Kd, m(-1)), whereas Kd values were significantly greater in the Middle and Lower Keys. Mean 1% attenuation depths varied by reef region for ultraviolet B (UVB; 9.7 to 20 m), ultraviolet A (UVA; 22 to 40 m) and visible (27 to 43 m) solar radiation. Solar irradiances determined from remote sensed data were significantly correlated with measured values, but were generally overestimated at the depth of corals. Solar irradiances modeled using an atmospheric radiative transfer model parameterized with site specific approximations of cloud cover showed close agreement with measured values. Estimated daily doses (W h/m(2)) of UVB (0.01-19), UVA (2-360) and visible (29-1,653) solar radiation varied with coral depth (2 to 24 m) and meteorological conditions. These results indicate large variation in solar radiation dosimetry within coral reefs that may be estimated with reasonable accuracy using regional Kd measurements and radiative transfer modeling.     

Development and implementation of coral reef biocriteria in U.S. jurisdictions

Coral reefs worldwide are declining at an alarming rate and are under continuous threat from both natural and anthropogenic environmental stressors. Warmer sea temperatures attributed to global climate change and numerous human activities at local scales place these valuable ecosystems at risk. Reefs provide numerous services, including shoreline protection, fishing, tourism and biological diversity, which are lost through physical damage, overfishing, and pollution. Pollution can be controlled under provisions of the Clean Water Act, but these options have not been fully employed to protect coral reefs. No U.S. jurisdiction has implemented coral reef biocriteria, which are narrative or quantitative water quality standards based on the condition of a biological resource or assemblage. The President’s Ocean Action Plan directs the U.S. Environmental Protection Agency (EPA) to develop biological assessment methods and biological criteria for evaluating and maintaining the health of coral reef ecosystems. EPA has formed the Coral Reef Biocriteria Working Group (CRBWG) to foster development of coral reef biocriteria through focused research, evaluation and communication among Agency partners and U.S. jurisdictions. Ongoing CRBWG activities include development and evaluation of a rapid bioassessment protocol for application in biocriteria programs; development of a survey design and monitoring strategy for the U.S. Virgin Islands; comprehensive reviews of biocriteria approaches proposed by states and territories; and assembly of data from a variety of monitoring programs for additional metrics. Guidance documents are being prepared to assist U.S. jurisdictions in reaching protective and defensible biocriteria.     

有机紫外吸收剂在珊瑚礁区的污染特征及生态风险评价

有机紫外吸收剂是一类"准持久性"有机污染物,广泛存在于珊瑚礁区的各种环境介质中,并会对珊瑚健康产生威胁。近年来,随着珊瑚礁退化加重,珊瑚礁区有机紫外吸收剂污染问题逐渐受到重视。综述了近年来有机紫外吸收剂在全球不同珊瑚礁区水体、沉积物和珊瑚组织中的污染水平、时空分布特征,并评估了有机紫外吸收剂对珊瑚礁生态系统的危害程度。结果表明,每个海域的有机紫外吸收剂种类及浓度不尽相同,海水中的有机紫外吸收剂浓度总体处于ng/L至mg/L水平,并且近岸海域污染通常高于远岸海域污染,夏季污染通常高于其他季节污染。在二苯酮-1(BP-1)、二苯酮-3(BP-3)、二苯酮-8(BP-8)、对甲氧基肉桂酸辛酯(EHMC)、奥克立林(OC)等5种有机紫外吸收剂中,BP-3对珊瑚具有最大威胁,对88%以上的所调研珊瑚礁的珊瑚具有高生态风险,而BP-1、BP-8、EHMC、OC只在少部分珊瑚礁区对珊瑚具有中低生态风险。     

A Multivariate Analysis of Biophysical Parameters of Tallgrass Prairie Among Land Management Practices and Years

Six treatments of eastern Kansas tallgrass prairie – native prairie, hayed, mowed, grazed, burned and untreated – were studied to examine the biophysical effects of land management practices on grasslands. On each treatment, measurements of plant biomass, leaf area index, plant cover, leaf moisture and soil moisture were collected. In addition, measurements were taken of the Normalized Difference VegetationIndex (NDVI), which is derived from spectral reflectance measurements. Measurements were taken in mid-June, mid-July and late summer of 1990 and 1991. Multivariate analysis of variance was used to determine whether there were differences in the set of variables among treatments and years. Follow-up tests included univariate t-tests to determine whichvariables were contributing to any significant difference. Results showed a significant difference (p < 0.0005) among treatments in the composite of parameters during each of the months sampled. In most treatment types, there was asignificant difference between years within each month. The univariate tests showed, however, that only some variables, primarily soil moisture, were contributing to this difference. We conclude that biomass and % plant cover show the best potential to serve as long-term indicators of grassland condition as they generally were sensitive to effects ofdifferent land management practices but not to yearlychange in weather conditions. NDVI was insensitive to precipitation differences between years in July for most treatments, but was not in the native prairie. Choice of sampling time is important for these parameters to serve effectively as indicators.     

Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video

We introduce an automated benthic counting system in application for rapid reef assessment that utilizes computer vision on subsurface underwater reef video. Video acquisition was executed by lowering a submersible bullet-type camera from a motor boat while moving across the reef area. A GPS and echo sounder were linked to the video recorder to record bathymetry and location points. Analysis of living and non-living components was implemented through image color and texture feature extraction from the reef video frames and classification via Linear Discriminant Analysis. Compared to common rapid reef assessment protocols, our system can perform fine scale data acquisition and processing in one day. Reef video was acquired in Ngedarrak Reef, Koror, Republic of Palau. Overall success performance ranges from 60% to 77% for depths of 1 to 3 m. The development of an automated rapid reef classification system is most promising for reef studies that need fast and frequent data acquisition of percent cover of living and nonliving components.     

Evaluating Ecological Indicators: Lakes In The Northeastern United States

We use data from a survey of several hundred lakes in the northeastern United States by the U.S. Environmental Protection Agency to illustrate an approach to identifying promising indicators of lake condition. We construct a hypothetical gold standard of water quality from the first principal component of 16 chemical variables measured in the lakes, and examine its associations with 71 candidate indicators based on measurements of human activity, birds, fish and zooplankton in the lakes or their watersheds. Nonparametric summaries of these associations – based on rank correlations and receiver-operating-characteristic curves – suggest that variables summarizing the extent of human disturbance are generally the strongest indicators. To the extent that our water-quality variable is a useful proxy for ecological condition, our results suggest that easily-obtained measures of human activity are at least as predictive as many of the harder-to-measure biological indicators that have been proposed.     

Tsunami Survey Expedition: Preliminary Investigation of Maldivian Coral Reefs Two Weeks After the Event

On December 26th 2004, a earthquake west of Sumatra generated a devastating tsunami. Hundreds of thousands of people fell victim. Economic losses were greatest in those countries dependant on tourism. The impact in the Maldives on persons and things was modest. Immediately following the event and notwithstanding the lack of scientific data, the mass media gave catastrophic reports on the state of coral reefs in the area. This paper reports on the first survey on coral reefs in the Maldives after the Tsunami. Ocean walls, passes, inner reefs, and shoals in the North and South Malé atolls, were surveyed two weeks after the event. Significant damage was recorded in the passes in the South Malé atoll. Our observations showed that the damage was more or less extensive depending on latitude and topography. Sri Lanka may have broken the wave’s rush, reducing the extent of the impact on northern atolls. The water’s acceleration inside the passes was so intense as to cause reef collapses. The observed damage represents a minimum fraction of the entire coral reef system. Tourist perception of the area seems unchanged. These data may be used to disseminate correct information about the state of Maldives coral reefs, which would be useful in relaunching local economy.     

Regional status assessment of stony corals in the US Virgin Islands

States may protect coral reefs using biological water quality standards outlined by the Clean Water Act. This requires biological assessments with indicators sensitive to human disturbance and regional, probability-based survey designs. Stony coral condition was characterized on a regional scale for the first time in the nearshore waters of the US Virgin Islands (USVI). Coral composition, abundance, size, and health were assessed at 66 stations in the St. Croix region in fall 2007 and at 63 stations in the St. Thomas and St. John region in winter 2009. Indicators were chosen for their sensitivity to human disturbance. Both surveys were probability-based (random) designs with station locations preselected from areas covered by hardbottom and coral reef substrate. Taxa richness was as high as 21 species but more than half the area of both regions exhibited taxa richness of <10 species in the 25 m² transect area. Coral density was as high as 5 colonies m^?2 but more than half the area of both regions had <2 colonies m^?2. Both regions showed similar dominant species based on frequency of occurrence and relative abundance. Because of large colony sizes, Montastrea annularis provided more total surface area and live surface area than more abundant species. The surveys establish baseline regional conditions and provide a foundation for long-term regional monitoring envisioned by the USVI Department of Planning and Natural Resources. The probabilistic sampling design assures the data can be used in Clean Water Act reporting.     

Sources and spatial distribution of heavy metals in scleractinian coral tissues and sediments from the Bocas del Toro Archipelago, Panama

Marine ecosystems worldwide are threatened by aquatic pollution; however, there is a paucity in data from the Caribbean region. As such, five heavy metals (arsenic, cadmium, copper, zinc, mercury) were measured in tissues of the scleractinian corals Porites furcata and Agaricia tenuifolia and in adjacent sediments in the Bocas del Toro Archipelago, Panama. Samples were collected from five reef sites along a gradient of distance from an international shipping port and were analysed using inductively coupled plasma optical emission spectrometry and atomic absorption spectrophotometry for mercury. Copper and zinc were the most abundant metals and ranged from 11 to 63 mg kg^?1 and from 31 to 185 mg kg^?1 in coral tissues, respectively. The highest concentration of each metal was measured in P. furcata tissues, with copper and mercury concentrations significantly higher in P. furcata than in A. tenuifolia at every site. These results suggest that P. furcata has a higher affinity for metal accumulation and storage than A. tenuifolia. With the exception of cadmium, metal concentrations in coral tissues were generally elevated at coral reefs in closer proximity to the port; however, this pattern was not observed in sediments. Hard coral cover was lowest at reefs in closest proximity to the port, suggesting that metal pollution from port-related activities is influencing hard coral abundance at nearby coral reefs.     

Heavy metal in water and aquatic organisms from different intertidal ecosystems,Persian Gulf

Intertidal ecosystems are being damaged by anthropogenic activities, particularly in the developing countries. In this study, the load of heavy metals was determined in water, fish, shrimp, and crab collected from four intertidal ecosystems, including coral reef, rocky shore, mangrove forest, and muddy habitat along the Persian Gulf coasts. Generally, the sequence of metal accumulation in the water of coral reef and mangrove forest was Ni > Pb > V > Cd > As > Hg, whereas in muddy habitats and rocky shores, the sequence was Ni > Pb > V > Cd > Hg > As and Ni > V > Pb > As > Hg > Cd, respectively. Water of the coral reef had the highest level of Ni (97.44 μg l^?1), Pb (3.92 μg l^?1), V (10.42 μg l^?1), Cd (3.92 μg l^?1), As (1.87 μg l^?1), and Hg (0.74 μg l^?1). For the most part, the highest concentrations of the studied metals were found in the liver and the gills of Johnius belangerii and the hepatopancreas of Portunus pelagicus and Metapenaus affinis collected from the coral reef ecosystem.