Diversity of antibiotic resistance genes and encoding ribosomal protection proteins gene in livestock waste polluted environment

The rapid development and increase of antibiotic resistance are global phenomena resulting from the extensive use of antibiotics in human clinics and animal feeding operations. Antibiotics can promote the occurrence of antibiotic resistance genes (ARGs), which can be transferred horizontally to humans and animals through water and the food chain. In this study, the presence and abundance of ARGs in livestock waste was monitored by quantitative PCR. A diverse set of bacteria and tetracycline resistance genes encoding ribosomal protection proteins (RPPs) from three livestock farms and a river were analyzed through denaturing gradient gel electrophoresis (DGGE). The abundance of sul(I) was 10³ to 10⁵ orders of magnitude higher than that of sul(II). Among 11 tet-ARGs, the most abundant was tet(O). The results regarding bacterial diversity indicated that the presence of antibiotics might have an evident impact on bacterial diversity at every site, particularly at the investigated swine producer. The effect of livestock waste on the bacterial diversity of soil was stronger than that of water. Furthermore, a sequencing analysis showed that tet(M) exhibited two genotypes, while the other RPPs-encoding genes exhibited at least three genotypes. This study showed that various ARGs and RPPs-encoding genes are particularly widespread among livestock.     

Pollution characteristics and environmental risk assessment of typical veterinary antibiotics in livestock farms in Southeastern China

Scientific interest in pollution from antibiotics in animal husbandry has increased during recent years. However, there have been few studies on the vertical exposure characteristics of typical veterinary antibiotics in different exposure matrices from different livestock farms. This study explores the distribution and migration of antibiotics from feed to manure, from manure to soil, and from soil to vegetables, by investigating the exposure level of typical antibiotics in feed, manure, soil, vegetables, water, fish, and pork in livestock farms. A screening environmental risk assessment was conducted to identify the hazardous potential of veterinary antibiotics from livestock farms in southeast China. The results show that adding antibiotics to drinking water as well as the excessive use of antibiotic feed additives may become the major source of antibiotics pollution in livestock farms. Physical and chemical properties significantly affect the distribution and migration of various antibiotics from manure to soil and from soil to plant. Simple migration models can predict the accumulation of antibiotics in soil and plants. The environmental risk assessment results show that more attention should be paid to the terrestrial eco-risk of sulfadiazine, sulfamethazine, sulfamethoxazole, tetracycline, oxytetracycline, chlorotetracycline, ciprofloxacin, and enrofloxacin, and to the aquatic eco-risk of chlorotetracycline, ciprofloxacin, and enrofloxacin. This is the first systematic analysis of the vertical pollution characteristics of typical veterinary antibiotics in livestock farms in southeast China. It also identifies the ecological and human health risk of veterinary antibiotics.     

Regional-specific emission inventory for NH3, N2O, and CH4 via animal farming in South, Southeast, and East Asia

Ammonia, nitrous oxide, and methane emission from animal farming of South, Southeast, and East Asia, in 2000, was estimated at about 4.7 Tg NH₃–N, 0.51 Tg N₂O–N, and 29.9 Tg CH₄, respectively, using the FAO database and countries’ statistic databases as activity data, and emission factors taking account of regional characteristics. Most of these atmospheric components, up to 60–80%, were produced in China and India. Pakistan, Bangladesh, and Indonesia, which were large source countries next to China and India, contributed more than a few percent of total emission of each atmospheric component. The largest emission livestock were cattle whose contribution was considerably high in South, Southeast, and East Asia; more than one-fourth of ammonia and nitrous oxide emissions: more than half of methane emission. The other major livestock for nitrous oxide and ammonia emissions were pigs. For methane emission, buffaloes were second source livestock. To provide spatial distributions of these gases, the emissions of county and district level were allocated into each 0.5° grid by means of the weighting by high-resolution land cover datasets. The regions with considerable high emissions of all components were able to be found at the Ganges delta and the Yellow River basin. The spatial distributions for ammonia and nitrous oxide emissions were similar but had a substantial difference from methane distribution.     

Isolated Ficus trees deliver dual conservation and development benefits in a rural landscape

Many of the world’s rural populations are dependent on the local provision of economically and medicinally important plant resources. However, increasing land-use intensity is depleting these resources, reducing human welfare, and thereby constraining development. Here we investigate a low cost strategy to manage the availability of valuable plant resources, facilitated by the use of isolated Ficus trees as restoration nuclei. We surveyed the plants growing under 207 isolated trees in Assam, India, and categorized them according to their local human-uses. We found that Ficus trees were associated with double the density of important high-grade timber, firewood, human food, livestock fodder, and medicinal plants compared to non-Ficus trees. Management practices were also important in determining the density of valuable plants, with grazing pressure and land-use intensity significantly affecting densities in most categories. Community management practices that conserve isolated Ficus trees, and restrict livestock grazing and high-intensity land-use in their vicinity, can promote plant growth and the provision of important local resources.

Electronic supplementary material

The online version of this article (doi:10.1007/s13280-015-0645-9) contains supplementary material, which is available to authorized users.     

Practices,perceptions, and implications of fertilizer use in East-Central China

Face-to-face interviews (n = 553) were conducted in five counties in East-Central China to study farmers’ fertilizer application behaviors, decision-making processes, attitudes towards adopting better fertilizer application technologies, and environmental consciousness. The survey results revealed widespread fertilizer misapplication and highly variable application behaviors in the study regions. The lack of scientific knowledge on fertilizers and the absence of guidance from agricultural extension services have forced the farmers to rely on personal judgment and advice from fertilizer dealers and friends to make decisions in fertilizer application. Overall, farmers have been idiosyncratic in fertilizer application with limited adoption of better fertilizer application technologies. There are great potentials for reducing pollutant load from agricultural runoff through promoting scientific fertilizer application in the regions. However, farmers’ diverse preferences over agricultural extension programs necessitate an integrated approach emphasizing farmer involvement throughout the development of such programs for promoting better fertilizer application practices.     

Loss of traditional knowledge aggravates wolf–human conflict in Georgia (Caucasus) in the wake of socio-economic change

Reports of the damage from wolf attacks have increased considerably over the last decade in Georgia (in the Caucasus). We interviewed locals about this problem in two focal regions: the Lanchkhuti area (in western Georgia) and Kazbegi District (in eastern Georgia) where livestock numbers had increased by an order of magnitude owing to dramatic shifts in the local economies over the last decade. This coincided with expanding habitats for wolves (abandoned plantations, for example). We found that the perceived damage from wolves was positively correlated with a poor knowledge of wolf habits and inappropriate livestock husbandry practices. Our results suggest a loss of traditional knowledge contributes strongly to the wolf–human conflicts in Georgia. Restoring traditional, simple but good practices—such as protecting herds using shepherd dogs and introducing bulls into the herds—can help one solve this problem.

Electronic supplementary material

The online version of this article (doi:10.1007/s13280-014-0580-1) contains supplementary material, which is available to authorized users.     

Past,present, and future use of phosphorus in Chinese agriculture and its influence on phosphorus losses

Large inputs of phosphorus (P) in chemical fertilizers and feed supplements since 1978 have improved soil P status in arable land in China, but have also created challenges by increasing P concentrations in manure and exacerbating water quality degradation. Arable land in China can be divided into five management zones based on soil P chemistry, with 15–92 % of arable land having lower P status than the agronomic optimum and 0.3–7.2 % having severe risks of P leaching losses. A scenario analysis of soil P budget and agronomic P demand during 2011–2030 highlighted the great pressure China faces in sustainable P management and the need for drastic changes in current practices. This includes new policies to reduce P supplementation of feed and improved P use efficiency by livestock and programs to expand the adoption of appropriate fertilization, soil conservation, and drainage management practices to minimize P losses.     

‘Contractual’ and ‘cooperative’ civic engagement: The emergence and roles of ‘flood action groups’ in England and Wales

Devolution of responsibilities is transforming how flood risk is managed in many countries. Research assessing the emergence and role of a new element in the governance of flood risk management in England explored the numerous ‘flood action groups’ that have developed over the last decade. We identified two broad categories of relationship between the public and authorities. The first displays ‘contractual’ characteristics: a level of protection provided by the authority in exchange for taxes or similar support. The second embodies a ‘collaborative’ relationship: public knowledge, social and financial resources are equal and complementary to those of authority, and seeking ‘collective security’. In general, the former were more successful than the latter, but common lessons were that success in FRM should not be defined purely as the ability to prevent flooding, but as the ability to access a variety of resources across different levels of society at different stages of flood risk management.     

Agriculture,dairy and fishery farming practices and greenhouse gas emission footprint: a strategic appraisal for mitigation

Rising global population would force farmers to amplify food production substantially in upcoming 3–4 decades. The easiest way to increase grain production is through expanding cropping area by clearing uncultivated land. This is attained by permitting deadly loss of carbon (C) stocks, jeopardizing ecosystem biodiversity and deteriorating environmental quality. We aim to propose key agronomical tactics, livestock management strategy and advance approaches for aquaculture to increase productivity and simultaneously reduce the environmental impacts of farming sector. For this, we considered three major sectors of farming, i.e. agriculture, fishery and dairy. We collected literatures stating approaches or technologies that could reduce GHG emission from these sectors. Thereafter, we synthesized strategies or options that are more feasible and accessible for inclusion in farm sector to reduce GHG emission. Having comprehensively reviewed several publications, we propose potential strategies to reduce GHG emission. Agronomic practices like crop diversification, reducing summer fallow, soil organic carbon sequestration, tillage and crop residue management and inclusion of N2-fixing pulses in crop rotations are some of those. Livestock management through changing animals’ diets, optimal use of the gas produced from manures, frequent and complete manure removal from animal housing and aquaculture management strategies to improve fish health and improve feed conversion efficiency could reduce their GHG emission footprint too. Adapting of effective and economic practices GHG emission footprint reduction potential of farming sector could make farming sector a C neutral enterprise. To overcome the ecological, technological and institutional barriers, policy on trade, tax, grazing practice and GHG pricing should be implemented properly.     

Disruption of the global nitrogen cycle: A grand challenge for the twenty-first century: This article belongs to Ambio’s 50th Anniversary Collection. Theme: Eutrophication

Disruption of the global nitrogen cycle by humans results primarily from activities associated with food and energy production. Since the middle of the twentieth century, human activities have more than doubled inputs of nitrogen to the Earth’s ecosystems. This new nitrogen is in chemically and biologically active forms (reactive N) and moves through the environment causing an array of health and environmental problems. Research published in Ambio for the past three decades has been documenting this major global-scale problem and has catalyzed the formation of a science-led initiative, the International Nitrogen Initiative (INI), which has informed policies to manage the global nitrogen cycle. Currently, gaps and opportunities in nitrogen pollution policies still exist and require new interdisciplinary science to help to place the nitrogen management challenge in the context of the other environmental grand challenges of our time including climate change and biodiversity loss because their solutions will be interconnected.     

Linnaeus’ study of Swedish swidden cultivation: Pioneering ethnographic work on the ‘economy of nature’

Carl Linnaeus’ work on the ‘economy of nature’ was a major early development in what became the modern field of ecology. This analysis suggests that a key subject of this work that has been ignored or misunderstood for 250 years is the rural livelihoods, especially swidden (or slash-and-burn) agriculture, which Linnaeus studied during his expeditions through rural Sweden. Rereading his reports in the light of modern work on swiddens, political ecology, and the history of science affords a new appreciation of Linnaeus’ insights into traditional systems of resource exploitation. The logic of nutrient cycling in swidden agriculture and its utilization of natural dynamics to serve human ends exemplify the principles of the ‘economy of nature’, and gave Linnaeus a philosophical basis for understanding and defending this system of agriculture as well as other rural resource use systems in Sweden. This analysis sheds new light on Linnaeus’ ethnographic work, his view of folk environmental knowledge, and his often derided identification with Sweden’s ethnic peoples.     

Scientists’ warning to humanity on the freshwater biodiversity crisis

Freshwater ecosystems provide irreplaceable services for both nature and society. The quality and quantity of freshwater affect biogeochemical processes and ecological dynamics that determine biodiversity, ecosystem productivity, and human health and welfare at local, regional and global scales. Freshwater ecosystems and their associated riparian habitats are amongst the most biologically diverse on Earth, and have inestimable economic, health, cultural, scientific and educational values. Yet human impacts to lakes, rivers, streams, wetlands and groundwater are dramatically reducing biodiversity and robbing critical natural resources and services from current and future generations. Freshwater biodiversity is declining rapidly on every continent and in every major river basin on Earth, and this degradation is occurring more rapidly than in terrestrial ecosystems. Currently, about one third of all global freshwater discharges pass through human agricultural, industrial or urban infrastructure. About one fifth of the Earth’s arable land is now already equipped for irrigation, including all the most productive lands, and this proportion is projected to surpass one third by midcentury to feed the rapidly expanding populations of humans and commensal species, especially poultry and ruminant livestock. Less than one fifth of the world’s preindustrial freshwater wetlands remain, and this proportion is projected to decline to under one tenth by midcentury, with imminent threats from water transfer megaprojects in Brazil and India, and coastal wetland drainage megaprojects in China. The Living Planet Index for freshwater vertebrate populations has declined to just one third that of 1970, and is projected to sink below one fifth by midcentury. A linear model of global economic expansion yields the chilling prediction that human utilization of critical freshwater resources will approach one half of the Earth’s total capacity by midcentury. Although the magnitude and growth of the human freshwater footprint are greater than is generally understood by policy makers, the news media, or the general public, slowing and reversing dramatic losses of freshwater species and ecosystems is still possible. We recommend a set of urgent policy actions that promote clean water, conserve watershed services, and restore freshwater ecosystems and their vital services. Effective management of freshwater resources and ecosystems must be ranked amongst humanity’s highest priorities.Electronic supplementary materialThe online version of this article (10.1007/s13280-020-01318-8) contains supplementary material, which is available to authorized users.     

Phosphorus use-efficiency of agriculture and food system in the US

The rapid increase in human mobilization of phosphorus has raised concerns on both its supply security and its impact on the environment. Increasing the efficiency of phosphorus use is an approach to mitigate the adverse impacts associated with phosphorus consumption. This study estimates the life-cycle phosphorus use-efficiency of the US food system. A framework for accounting phosphorus stocks and flows is developed, and the account was populated with data. A map of phosphorus stocks and flows around the US food system is drawn and phosphorus use-efficiency was calculated. The results show that only 15% of the total phosphorus extracted from nature for the provision of food is eventually ingested by humans and the rest is lost to the environment. Major losses occur during the livestock, meat and dairy production and crop cultivation stage, where about 66% of the total phosphorus extracted is lost to the environment. The results also show that other losses of phosphorus including household food waste, mining waste, and fertilizer manufacturing waste are not negligible, which constitute about 19% of the total phosphorus extracted for food purpose. A data quality assessment and sensitivity analysis was performed to identify data quality hotspots and to envisage effective measures to improving phosphorus use-efficiency. Improving yields of livestock and crop cultivation without additional phosphorus input and reducing household food waste are shown to be effective measures to improve life-cycle phosphorus use-efficiency. The results highlight the need of a concerted effort by all entities along the life-cycle for efficient use of phosphorus.     

The influence of soil contamination on the concentrations of PCBs in milk in Siberia

Although atmospheric deposition is generally the dominant pathway of PCBs into agricultural food chains, soil ingestion by livestock can be important in some cases. The relationship between PCB levels in cow's milk and in pasture soil was studied in the Irkutsk region in Siberia where an historical atmospheric source(s) of PCBs has led to widespread contamination of soil. Milk samples were collected in spring and again in autumn from 18 different farms and analyzed for PCBs. Pasture soil samples were also collected and analyzed. The PCB concentrations in both milk and soil ranged over more than an order of magnitude between the farms. A good correlation was obtained between PCB levels in autumn milk and in soil. This together with a range of other evidence suggested that ingestion of pasture soil was the dominant source of the PCB contamination in the milk. The average soil ingestion rate was estimated to be 1700 g/d, which is at the upper end of values reported in the literature. This may be due to the arid summer climate or the animal husbandry practices in Siberia.     

The forest environmental frontier in Russia: Between sustainable forest management discourses and ‘wood mining’ practice

With 20% of the world’s forests, Russia has global potential in bioeconomy development, biodiversity conservation and climate change mitigation. However, unsustainable forest management based on ‘wood mining’ reduces this potential. Based on document analysis, participant observations and interviews, this article shows how non-state actors—environmental NGOs and forest companies—address forest resource depletion and primary forest loss in Russia. We analyse two key interrelated forest discourses driven by non-state actors in Russia: (1) intensive forest management in secondary forests as a pathway towards sustained yield and primary forest conservation; (2) intact forest landscapes as a priority in primary forest conservation. We illustrate how these discourses have been integrated into policy debates, institutions and practices and discuss their relation to relevant global discourses. The article concludes that despite successful cases in conserving intact forest landscapes, there is still a frontier between sustainable forest management discourses and forestry practice in Russia.Supplementary InformationThe online version contains supplementary material available at 10.1007/s13280-021-01643-6.     

Bottom-up uncertainty estimates of global ammonia emissions from global agricultural production systems

Here we present an uncertainty analysis of NH₃ emissions from agricultural production systems based on a global NH₃ emission inventory with a 5×5 min resolution. Of all results the mean is given with a range (10% and 90% percentile). The uncertainty range for the global NH₃ emission from agricultural systems is 27–38 (with a mean of 32) Tg NH₃-N yr⁻¹, N fertilizer use contributing 10–12 (11) Tg yr⁻¹ and livestock production 16–27 (21) Tg yr⁻¹. Most of the emissions from livestock production come from animal houses and storage systems (31–55%); smaller contributions come from the spreading of animal manure (23–38%) and grazing animals (17–37%). This uncertainty analysis allows for identifying and improving those input parameters with a major influence on the results. The most important determinants of the uncertainty related to the global agricultural NH₃ emission comprise four parameters (N excretion rates, NH₃ emission rates for manure in animal houses and storage, the fraction of the time that ruminants graze and the fraction of non-agricultural use of manure) specific to mixed and landless systems, and total animal stocks. Nitrogen excretion rates and NH₃ emission rates from animal houses and storage systems are shown consistently to be the most important parameters in most parts of the world. Input parameters for pastoral systems are less relevant. However, there are clear differences between world regions and individual countries, reflecting the differences in livestock production systems.     

Nature and COVID-19: The pandemic,the environment,and the way ahead

The COVID-19 pandemic has brought profound social, political, economic, and environmental challenges to the world. The virus may have emerged from wildlife reservoirs linked to environmental disruption, was transmitted to humans via the wildlife trade, and its spread was facilitated by economic globalization. The pandemic arrived at a time when wildfires, high temperatures, floods, and storms amplified human suffering. These challenges call for a powerful response to COVID-19 that addresses social and economic development, climate change, and biodiversity together, offering an opportunity to bring transformational change to the structure and functioning of the global economy. This biodefense can include a “One Health” approach in all relevant sectors; a greener approach to agriculture that minimizes greenhouse gas emissions and leads to healthier diets; sustainable forms of energy; more effective international environmental agreements; post-COVID development that is equitable and sustainable; and nature-compatible international trade. Restoring and enhancing protected areas as part of devoting 50% of the planet’s land to environmentally sound management that conserves biodiversity would also support adaptation to climate change and limit human contact with zoonotic pathogens. The essential links between human health and well-being, biodiversity, and climate change could inspire a new generation of innovators to provide green solutions to enable humans to live in a healthy balance with nature leading to a long-term resilient future.     

Pollution characteristics of 23 veterinary antibiotics in livestock manure and manure-amended soils in Jiangsu province,China

The aim of this study was to investigate the pollution characteristics of typical veterinary antibiotics in manure and soil of livestock farms in Jiangsu province. This investigation employed solid-phase extraction (SPE) coupled with ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). A total of 53 manure and 50 amended soil samples from 16 livestock farms in Jiangsu province were collected for analysis. In the manure samples, the highest detected frequencies and concentrations were those of tetracyclines (TCs, 54.1 ± 5775.6 μgkg^?1), followed by fluoroquinolones (FQs, 8.4 ± 435.6 μgkg^?1), sulphonamides (SAs, 3.2 ± 5.2 μgkg^?1) and macrolides (MACs, 0.4 ± 110.5 μgkg^?1). Statistical analysis was used to illuminate the pollution characteristics of 23 veterinary antibiotics for various animal types and different regions in Jiangsu province. The results showed that the pollution level in cow manure was relatively lower compared with pig and chicken manure due to the relative restriction of medication. Furthermore, contamination was serious in amended soil from chicken farms. The pollution level in manure among different regions was higher to the south and north compared with the centre of the region. The same outcome was found for soil. Antibiotic residues in organic fertilizer were also investigated in this study. We found that although the detected concentration was lower in organic fertilizer than in fresh manure, detection frequencies (10–90%) were high, especially for roxithromycin (90%) in MACs (30–90%). This finding suggests attention should be paid to the pollution levels in organic fertilizer. This study is the first extensive investigation of the occurrence and distribution of many kinds of typical veterinary antibiotics in manure and soil from livestock farms of Jiangsu province. This investigation systematically assesses veterinary antibiotics usage and related emissions in southeast China.     

Beyond ‘trees are good’: Disservices,management costs,and tradeoffs in urban forestry

The provision of ecosystem services is a prominent rationale for urban greening, and there is a prevailing mantra that ‘trees are good’. However, understanding how urban trees contribute to sustainability must also consider disservices. In this perspective article, we discuss recent research on ecosystem disservices of urban trees, including infrastructure conflicts, health and safety impacts, aesthetic issues, and environmentally detrimental consequences, as well as management costs related to ecological disturbances and risk management. We also discuss tradeoffs regarding species selection and local conservation concerns, as well as the central role of human perception in the interpretation of ecosystem services and disservices, particularly the uncritical assertion that ‘everybody loves trees’. Urban forestry decision-making that fails to account for disservices can have unintended negative consequences for communities. Further research is needed regarding life cycle assessments, stakeholder decision-making, return-on-investment, and framings of services and disservices in urban forestry.     

Contribution of women’s fisheries substantial,but overlooked,in Timor-Leste

A greater understanding of gendered roles in fisheries is necessary to value the often-hidden roles that women play in fisheries and households. We examine women’s contributions to household food and income using focus group discussions, market surveys, and landings data in six communities in Timor-Leste. Women were actively fishing more days per month than men. Gleaning was the most frequent activity and 100% of trips returned with catch for food and/or income. Mollusc and crab catches were common and exploitation appeared targeted on a dynamic reappraisal of changing food values and changing estimates of group needs. With as many as 80% of households in coastal areas involved in fishing, and at least 50% of women fishing, this highlights the current lack of women’s engagement as a critical gap in fisheries management approaches. The current androcentric dialogue limits social-ecological understanding of these systems and the potential for their effective stewardship.Electronic supplementary materialThe online version of this article (10.1007/s13280-020-01335-7) contains supplementary material, which is available to authorized users.