Social network properties within a fish assemblage invaded by non-native sunbleak Leucaspius delineatus

Network theory is commonly used to reveal social interactions and the organisation of interconnected nodes—but has not yet been applied to animal invasions. Non-native species invasions are now considered one of the foremost threats to natural ecosystems and biodiversity. This is the first attempt to assess social network properties within a freshwater fish assemblage invaded by a non-native fish species. We show that invasive sunbleak Leucaspius delineatus is socially more strongly interconnected with native species than the native species with each other. The social networks also reveal characteristics of a ‘small world’ such as low clustering coefficients C and short path lengths L. The findings may indicate potential traits of successful invaders and the implication for the spread of pathogens between individuals within a group of animals that contain a non-native invasive species. The success of establishment and subsequent invasion may be highlighted not only by the capacity of the new species to adapt to the new environment, but also in its capacity to penetrate the social circle of the native community.     

Fish recruitment prediction, using robust supervised classification methods

Improving our ability to predict recruitment is a key element in fisheries management. However, the interactions between population dynamics and different environmental factors are complex and often non-linear, making it difficult to produce robust predictions. ‘Machine-learning’ techniques (in particular, supervised classification methods) have been proposed as useful tools, to overcome such difficulties. In this study, a methodology is proposed to build a robust classifier for fish recruitment prediction with sparse and noisy data. The methodology consists of 4 steps: (1) a semi-automated recruitment discretization method; (2) supervised discretization of predictors; (3) multivariate and non-redundant predictors selection; (4) learning a probabilistic classifier. In terms of fisheries management, the classifier estimated performance has important consequences and, to be useful, the manager needs to know the risk that is being taken when using this number. Probabilistic classifiers such as ‘naive Bayes’, have the advantage that, in addition to the predictions, estimate also the probability of each possible outcome. Anchovy (Engraulis encrasicolus) and hake (Merluccius merluccius) recruitments are used as application examples. ‘Two-intervals’ recruitment discretization accomplishes 70% accuracies and Brier scores of around 0.10, for both anchovy and hake recruitment. In comparison, ‘three-intervals’ recruitment discretization accomplishes 50% accuracies; and Brier scores of around 0.25 for anchovy and 0.30 for hake recruitment. These statistics are the result of validating not only the classifier, but also the previous steps, as a whole methodology.     

Effects of Human Population Density and Proximity to Markets on Coral Reef Fishes Vulnerable to Extinction by Fishing

Coral reef fisheries are crucial to the livelihoods of tens of millions of people; yet, widespread habitat degradation and unsustainable fishing are causing severe depletion of stocks of reef fish. Understanding how social and economic factors, such as human population density, access to external markets, and modernization interact with fishing and habitat degradation to affect fish stocks is vital to sustainable management of coral reef fisheries. We used fish survey data, national social and economic data, and path analyses to assess whether these factors explain variation in biomass of coral reef fishes among 25 sites in Solomon Islands. We categorized fishes into 3 groups on the basis of life‐history characteristics associated with vulnerability to extinction by fishing (high, medium, and low vulnerability). The biomass of fish with low vulnerability was positively related to habitat condition. The biomass of fishes with high vulnerability was negatively related to fishing conducted with efficient gear. Use of efficient gear, in turn, was strongly and positively related to both population density and market proximity. This result suggests local population pressure and external markets have additive negative effects on vulnerable reef fish. Biomass of the fish of medium vulnerability was not explained by fishing intensity or habitat condition, which suggests these species may be relatively resilient to both habitat degradation and fishing. Efectos de la Densidad de Poblaciones Humanas y la Proximidad del Mercado sobre Peces de Arrecifes de Coral Vulnerables a la Extinción     

Relative influence of environmental factors and fishing on coral reef fish assemblages

Understanding whether assemblages of species respond more strongly to bottom-up (availability of trophic resources or habitats) or top-down (predation pressure) processes is important for effective management of resources and ecosystems. We determined the relative influence of environmental factors and predation by humans in shaping the density, biomass, and species richness of 4 medium-bodied (10–40 cm total length [TL]) coral reef fish groups targeted by fishers (mesopredators, planktivores, grazer and detritivores, and scrapers) and the density of 2 groups not targeted by fishers (invertivores, small fish ≤10 cm TL) in the central Philippines. Boosted regression trees were used to model the response of each fish group to 21 predictor variables: 13 habitat variables, 5 island variables, and 3 fishing variables (no-take marine reserve [NTMR] presence or absence, NTMR size, and NTMR age). Targeted and nontargeted fish groups responded most strongly to habitat variables, then island variables. Fishing (NTMR) variables generally had less influence on fish groups. Of the habitat variables, live hard coral cover, structural complexity or habitat complexity index, and depth had the greatest effects on density, biomass, and species richness of targeted fish groups and on the density of nontargeted fishes. Of the island variables, proximity to the nearest river and island elevation had the most influence on fish groups. The NTMRs affected only fishes targeted by fishers; NTMR size positively correlated with density, biomass, and species richness of targeted fishes, particularly mesopredatory, and grazing and detritivorous fishes. Importantly, NTMRs as small as 15 ha positively affected medium-bodied fishes. This finding provides reassurance for regions that have invested in small-scale community-managed NTMRs. However, management strategies that integrate sound coastal land-use practices to conserve adjacent reef fish habitat, strategic NTMR placement, and establishment of larger NTMRs will be crucial for maintaining biodiversity and fisheries.     

Stability and structure of a fish community on a coral patch reef in Hawaii

Two complete collections of the fishes residing on an isolated coral patch reef ( 1500 m²) at Oahu, Hawaii, were made 11 years apart. Of the 112 species of fishes in both collections combined, only 40% were in common, but these made up more than 85% of the wet biomass in each collection. The two assemblages of fishes were similar in trophic structure and standing crop. Many coral reef fish communities are dominated by carnivorous forms. In the present study, planktivorous fishes were the most important trophic group in the community; this was related to abundant zooplankton resources. Following the second collection in 1977, recolonization by fishes was followed for 1 year. Recolonization proceeded rapidly and was primarily by juvenile fishes well beyond larval metamorphosis. Within 6 months of the second collection, the trophic structure had been re-established. The MacArthur-Wilson model of insular colonization described the recolonization process and predicted an equilibrium situation in less than 2 years. The recolonization data suggested that chance factors may explain the colonization process on a small scale, but a relatively deterministic pattern emerged when considering the entire reef. Thus, at the community level the fishes are a persistent and predictable entity.     

A multidimensional continuum model of fish behavior

A numerical model for the simulation and study of fish behavior is presented. The model, based on continuous representations in both biological and spatial dimensions, has been developed as part of a large Norwegian arctic ecosystems modeling project directed by Professor Jens G. Balchen of the University of Trondheim, Norway. The model describes the migratory behavior of fish, and is capable of incorporating a variety of hypothesized driving forces, such as food density, temperature, light, direction and magnitude of ocean currents, and local fish density. The model relies on standard finite difference numerical methods for solution of the continuum transport equations, and a gradient search conceptualization to determine fish taxis. Two driving forces, food and temperature fields, are used to provide a demonstration of the potentials of the proposed modeling methodology.     

Diel variation and seasonal consistency in the fish assemblage of the non-estuarine Sulaibikhat Bay,Kuwait

In the period between September 1986 and August 1988, using an otter trawl, a total of 50 species from 30 families were captured in Sulaibikhat Bay, Kuwait. The dominant species were Liza carinata (Valenciennes), Pomadasys stridens (Forrskal) and Leiognathus brevirostris (Valenciennes). Although the total number of fishes captured in 1986–1987 and 1987–1988 differed by an order of magnitude, the seasonal changes in numbers, biomass and number of species in the intertidal and subtidal zones were consistent. Unbalanced three-way analysis of variance showed that significantly larger numbers of fishes and number of species, but not biomass, were captured in the intertidal at night compared to the intertidal during the day. This difference may be due to both increased net efficiency and movement of fishes into the intertidal zone at night to avoid piscivorous fishes that move from deep water into shallower water. During the day few fish are present in the intertidal zone and this may be to avoid predation by piscivorous birds. Several species of fishes were shown to have different patterns of behaviour during the diel period.     

Short-term effects of an oil spill on the West coast of the Cape Peninsula, South Africa

In 1994, the sinking of the ‘Apollo Sea’ off the West coast of South Africa led to the deposition of ca. 2 500 tons of heavy fuel oil over 150 km of coastline. The impact of the spill on rocky shore invertebrates, rock-pool fish fauna and rock lobsters was assessed by conducting surveys shortly after the spill, and again two months later. Where possible, results of these surveys were compared with existing data from before the sinking of the Apollo Sea. Among the fish fauna of rock-pools, changes in total density of fishes were largely due to changes in the abundance ofClinus superciliosus and were within the range of natural variation for the species and the community as a whole. Community structure of the rock-pool fish fauna also remained unaffected. At three of four impacted rocky shore sites no changes could be detected in overall benthic community structure, although the winkleNodilittorina africana was affected. At the fourth site, a boulder beach, statistical analysis showed distinct differences in community structure between heavily and lightly contaminated areas, as well as between all areas compared with previously existing data. There were also significant changes in the lightly oiled areas between the first and second surveys after the spill. Oil-fouled lobster were found at one of three sites investigated. Ca. 7 % of the seabed in this particular area was polluted. Antennae and forelegs of almost all lobsters in the vicinity of the oil were fouled. Examination of the gut-contents confirmed that oil inhibits the ability of lobster to feed. Although there was no evidence that mortalities of lobster were caused by the spill, growth rates may be reduced by the decreased feeding rate. Overall, the impact of the spill was strikingly less than might have been predicted from the effects of other oil spills. Nomenclature: Names of fish species follow Smith & Heemstra (1986).     

Spatial and temporal variability in the assemblage structure of fishes associated with mangroves (<Emphasis Type="Italic">Avicennia marina</Emphasis>) and intertidal mudflats in temperate Australian embayments

Fishes using mangrove (Avicennia marina) and mudflat habitat were sampled using three different types of gear (seine, fyke, and gill nets) at three sites within each of two large embayments through time (quarterly) between January 2002 and November 2002. At least 41 species of fish were sampled, of which 78% were marine, 17% were estuarine, and 5% were freshwater. Juveniles were sampled in 41% of the species, and 5 and 6 species occurred exclusively in mangrove and mudflat habitats, respectively. The assemblage structure of fishes varied significantly between habitats (for both fyke and seine catches) and between spring and summer (seine catches), but only in one bay. Most of the variability between habitats and times of the year could be explained by differences in abundances of atherinids, mugulids, gobiids, tetraodontids, pleuronectids, and clupeids. Fyke nets sampled mainly juvenile and smaller species of fish. Fish abundance was always greater in mangroves than mudflats (but significantly so at four of the six study sites) and varied significantly between times of the year at one site, while the number of species varied significantly between times of the year at three sites. Gill nets sampled mostly adult/subadult fishes and abundances were greater in mudflats than mangroves at two sites, and in mangroves over mudflats at one site, while species abundance varied between times of the year at two sites. The seine net sampled mainly early post-settlement and small (<20 mm) fishes, more species of which were sampled in mudflat than mangrove during winter and spring, whereas the opposite pattern occurred in summer and autumn. The number of fish sampled with the seine net only varied significantly between habitats in one embayment during summer and spring, when they were larger and smaller, respectively, in mangroves than mudflats. Mangrove habitat in temperate Australian waters supports a richer juvenile fish assemblage than adjacent mudflats, but there is little difference between habitats for the subadult/adult assemblage. Ultimately, the value of mangrove habitats to fishes depends strongly on when and where (bays and sites within bays) the study is done.Communicated by M.S. Johnson, Crawley     

Using single- and multi-target regression trees and ensembles to model a compound index of vegetation condition

An important consideration in conservation and biodiversity planning is an appreciation of the condition or integrity of ecosystems. In this study, we have applied various machine learning methods to the problem of predicting the condition or quality of the remnant indigenous vegetation across an extensive area of south-eastern Australia—the state of Victoria. The field data were obtained using the ‘habitat hectares’ approach. This rapid assessment technique produces multiple scores that describe the condition of various attributes of the vegetation at a given site. Multiple sites were assessed and subsequently circumscribed with GIS and remote-sensed data.     

Evolutionary and Conservation Biology of Cichlid Fishes as Revealed by Faunal Remnants in Northern Lake Victoria

Lake Victoria until recently harbored the world's second richest lacustrine fish assemblage, but it is now experiencing a mass extinction. Here we report on the current status of the endemic cichlid fishes from a preliminary biotic inventory conducted as part of limnological reconnaissance in Kenyan and Ugandan waters during 1989–1992. Sixty-two haplochromine taxa were recovered, half of them new. Some are local endemics, while others are more widely distributed, based on review of earlier collections. Comparison with data from 1982–1984 and 1988 suggests that some shoreline assemblages have been locally stable over the past decade. In addition to littoral rock and vegetation, four kinds of refugia for indigenous fishes are recognized: (1) schools of Rastrineobola , (2) benthic microbial mats in deep water, (3) satellite lakes, (4) the oxycline. Reconnaissance by remote operated vehicle (ROV) documented fish kills due to deoxygenation of the water column, indicating the risk of using the oxycline as a refugium. Several species formerly abundant in Lake Victoria were found only in satellite lakes, revealing the importance of these lakes in the conservation of indigenous species. Recent events in Lake Victoria shed light on mechanisms of speciation and mass extinction, insights relevant to conservation planning for the valuable remnants of the lake's indigenous fauna.     

Stable isotopic evidence for trophic groupings and bio-regionalization of predators and their prey in oceanic waters off eastern Australia

Muscle tissue was collected for stable isotope analysis (SIA) from the main fish predators and their fish and cephalopod prey from oceanic waters off eastern Australia between 2004 and 2006. SIA of δ¹⁵N and δ¹³C revealed that the species examined could be divided into three main trophic groups. A “top predator” group consisted mainly of large billfish (Xiphias gladius and Tetrapturus audax), yellowfin (Thunnus albacares), bigeye (T. obesus) and southern bluefin (T. maccoyii) tunas and sharks; with mako (Isurus oxyrinchus) the highest. Below this tier was a second group composed of mid-trophic level fishes including albacore tuna (Thunnus alalunga), lancet fish (Alepisaurus ferox), mahi mahi (Coryphaena hippuris) and ommastrephid squid. Underlying both groups was a grouping of small fishes including myctophids, small scombrids and nomeids as well as surface fishes including macrorhamphosids. These groupings were based largely on mean animal size which showed a positive linear relation to δ¹⁵N (r ² = 0.58). Some species showed significant ontogenetic variation in either δ¹⁵N (swordfish, lancet fish, yellowfin and albacore tuna) or δ¹³C (mako shark). We also noted a consistent latitudinal change in δ¹⁵N and δ¹³C at ~28°S for the top predator species, particularly albacore and yellowfin tuna. The differences were consistent with a change from oligotrophic Coral Sea to nutrient rich Tasman Sea waters. These differences suggest that predatory fishes may have extended residence time in distinct regions off eastern Australia.     

High seagrass diversity and canopy-height increase associated fish diversity and abundance

Seagrass species function as typical foundation species that unifies most ecosystem processes. This ecosystem role depends largely on the morphological characteristics and structural complexity of seagrass beds, including their ecological importance for fish species. This study examined relationships between seagrass bed characteristics and associated fish communities in mixed seagrass beds. Correspondence analysis (CA) and canonical correlation analysis (CCoA) were performed to estimate relationships for individual seagrass bed characteristics. The CCoA results revealed that species richness and three-dimensional structure of seagrass had great effect on the biomass and richness of the associated fish community. The CA results revealed that the relative importance of seagrass bed characteristics differed among fish functional groups including fishes appearing on the surface of, inside, and on the bottom of seagrass beds. The fishes found on the surface of the beds preferred beds with low seagrass biomass and high three-dimensional structure, those inside the beds preferred beds with high seagrass biomass and high three-dimensional structure, and those on the bottom of the beds preferred locations with low seagrass biomass and low three-dimensional structure. The results of this study provide compelling evidence that seagrass beds with high species diversity and high three-dimensional structure, but intermediate biomass, may provide the great benefit to the associated fish community. Such niche complementarity among fishes may be a process facilitated by seagrass diversity for secondary production as an ecosystem functioning.     

Optimization of exergy and implications of body sizes of phytoplankton and zooplankton in an aquatic ecosystem model

Size appears to be an important parameter in ecological processes. All physiological processes vary with body size ranging from small microorganisms to higher mammals. In this model, five state variables — phosphorus, detritus, phytoplankton, zooplankton and fish are considered. We study the implications of body sizes of phytoplankton and zooplankton for total system dynamics by optimizing exergy as a goal function for system performance indicator. The rates of different sub-processes of phytoplankton and zooplankton are calculated, by means of allometric relationships of their body sizes. We run the model with different combinations of body sizes of phytoplankton and zooplankton and observe the overall biomass of phytoplankton, zooplankton and fish. The highest exergy values in different combinations of phytoplankton and zooplankton size indicate the maximum biomass of fish with relative proportions of phytoplankton and zooplankton. We also test the effect of phosphorus input conditions corresponding to oligotrophic, mesotrophic, eutrophic system on its dynamics. The average exergy to be maximized over phytoplankton and zooplankton size was computed when the system reached a steady state. Since this state is often a limit cycle, and the exergy copies this behaviour, we averaged the exergy computed for 365 days (duration of 1 year) in the stable period of the run. In mesotrophic condition, maximum fish biomass with relative proportional ratio of phytoplankton, zooplankton is recorded for phytoplankton size class 3.12 (log V μm³ volume) and zooplankton size 4 (log V μm³ volume). In oligotrophic condition the highest average exergy is obtained in between phytoplankton size 1.48 (log V μm³ volume) and zooplankton size 4 (log V μm³ volume), whereas in eutrophic condition the result shows the highest exergy in the combination of phytoplankton size 5.25 (log V μm³ volume) and zooplankton size 4 (log V μm³ volume).     

Interannual fluctuations in acoustic biomass estimates and in landings of small pelagic fish populations in relation to hydrology in the Strait of Sicily

The main results of research work carried out since 1998 with regard to the application of hydro-acoustic technologies for the evaluation of biomass and distribution of small pelagic fish species off the southern coast of Sicily are presented, taking into account information from hydrology and from ecology of the fish populations targeted. The biomass estimates and the population‐density charts presented concern the two main species, i.e. sardine Sardina pilchardus (Walbaum, 1792) and anchovy Engraulis encrasicolus (Linnaeus, 1758). Both the sardine and anchovy populations experienced large inter-annual fluctuations, with biomass estimates ranging from 6000 to over 36,000 tonnes (t) (sardine) and from about 7000 to 23,000 t (anchovy). Acoustic estimates are largely consistent with landings recorded in Sciacca (the main fishing port for small pelagic species in the study area) during the year following the evaluation surveys. In addition, trends in sardine and anchovy biomass estimates appears to be negatively correlated with the mean sea surface temperature calculated over the time intervals January–September (sardine) and June–November (anchovy) of the preceding year, which correspond to larval and juvenile growth periods of target species. Observed patterns would suggest the importance of enrichment processes relevant to the survival of early stages, so determining recruitment success and finally higher population sizes.     

Information processing in models for density-dependent emigration: A comparison

Density-dependent emigration has been recognized as a fitness enhancing strategy. Yet, especially in the modelling literature there is no consensus about how density-dependent emigration should quantitatively be incorporated into metapopulation models. In this paper we compare the performance of five different dispersal strategies (defined by the functional link between density and emigration probability). Four of these strategies are based on published functional relationships between local population density and emigration probability, one assumes density-independent dispersal. We use individual-based simulations of time-discrete metapopulation dynamics and conduct evolution experiments for a broad range of values for dispersal mortality and environmental stochasticity. For each set of these conditions we analyze the evolution of emigration rates in ‘monoculture experiments’ (with only one type of dispersal strategy used by all individuals in the metapopulation) as well as in selection experiments that allow a pair-wise comparison of the performance of each functional type. We find that a single-parameter ‘asymptotic threshold’ strategy - derived from the marginal value theorem - with a decelerating increase of emigration rate with increasing population density, out-competes any other strategy, i.e. density-independent emigration, a ‘linear threshold’ strategy and a flexible three-parameter strategy. Only when environmental conditions select for extremely high emigration probabilities (close to one), strategies may perform approximately equally. A simple threshold strategy derived for the case of continuous population growth performs even worse than the density-independent strategy. As the functional type of the dispersal function implemented in metapopulation models may severely affect predictions concerning the survival of populations, range expansion, or community changes we clearly recommend to carefully select adequate functions to model density-dependent dispersal.     

Role of the fish Astyanax aeneus (Characidae) as a keystone nutrient recycler in low-nutrient neotropical streams

Nutrient recycling by animals is a potentially important biogeochemical process in both terrestrial and aquatic ecosystems. Stoichiometric traits of individual species may result in some taxa playing disproportionately important roles in the recycling of nutrients relative to their biomass, acting as keystone nutrient recyclers. We examined factors controlling the relative contribution of 12 Neotropical fish species to nutrient recycling in four streams spanning a range of phosphorus (P) levels. In high-P conditions (135 microg/L soluble reactive phosphorus, SRP), most species fed on P-enriched diets and P excretion rates were high across species. In low-P conditions (3 microg/L SRP), aquatic food resources were depleted in P, and species with higher body P content showed low rates of P recycling. However, fishes that were subsidized by terrestrial inputs were decoupled from aquatic P availability and therefore excreted P at disproportionately high rates. One of these species, Astyanax aeneus (Characidae), represented 12% of the total population and 18% of the total biomass of the fish assemblage in our focal low-P study stream but had P excretion rates > 10-fold higher than other abundant fishes. As a result, we estimated that P excretion by A. aeneus accounted for 90% of the P recycled by this fish assemblage and also supplied approximately 90% of the stream P demand in this P-limited ecosystem. Nitrogen excretion rates showed little variation among species, and the contribution of a given species to ecosystem N recycling was largely dependent upon the total biomass of that species. Because of the high variability in P excretion rates among fish species, ecosystem-level P recycling could be particularly sensitive to changes in fish community structure in P-limited systems.     

Two-way coupling versus one-way forcing of plankton and fish models to predict ecosystem changes in the Benguela

‘End-to-end’ models have been adopted in an attempt to capture more of the processes that influence the ecology of marine ecosystems and to make system wide predictions of the effects of fishing and climate change. Here, we develop an end-to-end model by coupling existing models that describe the dynamics of low (ROMS–N₂P₂Z₂D₂) and high trophic levels (OSMOSE). ROMS–N₂P₂Z₂D₂ is a biogeochemical model representing phytoplankton and zooplankton seasonal dynamics forced by hydrodynamics in the Benguela upwelling ecosystem. OSMOSE is an individual-based model representing the dynamics of several species of fish, linked through opportunistic and size-based trophic interactions. The models are coupled through a two-way size-based predation process. Plankton provides prey for fish, and the effects of predation by fish on the plankton are described by a plankton mortality term that is variable in space and time. Using the end-to-end model, we compare the effects of two-way coupling versus one-way forcing of the fish model with the plankton biomass field. The fish-induced mortality on plankton is temporally variable, in part explained by seasonal changes in fish biomass. Inclusion of two-way feedback affects the seasonal dynamics of plankton groups and usually reduces the amplitude of variation in abundance (top-down effect). Forcing and coupling lead to different predicted food web structures owing to changes in the dominant food chain which is supported by plankton (bottom-up effect). Our comparisons of one-way forcing and two-way coupling show how feedbacks may affect abundance, food web structure and food web function and emphasise the need to critically examine the consequences of different model architectures when seeking to predict the effects of fishing and climate change.     

Sex ratios in bumble bee colonies: Complications due to orphaning?

Summary Highly male-biased investment ratios (1:2.86, F:M, biomass wet weight) were found among reproductives reared by 32 Bombus terricola colonies set out in the field and 35 B. melanopygus colonies held in laboratory confinement. The numerical sex ratios were almost identical for the two species (1 queen to 6.1 males). Most of the males were produced early in the season by small weak colonies. It is argued that in a population where some colonies are orphaned and rear only males, female-biased sex ratios are expected among the surviving queen-producing colonies.