Variability in Population Abundance and the Classification of Extinction Risk

Abstract: Classifying species according to their risk of extinction is a common practice and underpins much conservation activity. The reliability of such classifications rests on the accuracy of threat categorizations, but very little is known about the magnitude and types of errors that might be expected. The process of risk classification involves combining information from many sources, and understanding the quality of each source is critical to evaluating the overall status of the species. One common criterion used to classify extinction risk is a decline in abundance. Because abundance is a direct measure of conservation status, counts of individuals are generally the preferred method of evaluating whether populations are declining. Using the thresholds from criterion A of the International Union for Conservation of Nature (IUCN) Red List (critically endangered, decline in abundance of >80% over 10 years or 3 generations; endangered, decline in abundance of 50–80%; vulnerable, decline in abundance of 30–50%; least concern or near threatened, decline in abundance of 0–30%), we assessed 3 methods used to detect declines solely from estimates of abundance: use of just 2 estimates of abundance; use of linear regression on a time series of abundance; and use of state‐space models on a time series of abundance. We generated simulation data from empirical estimates of the typical variability in abundance and assessed the 3 methods for classification errors. The estimates of the proportion of falsely detected declines for linear regression and the state‐space models were low (maximum 3–14%), but 33–75% of small declines (30–50% over 15 years) were not detected. Ignoring uncertainty in estimates of abundance (with just 2 estimates of abundance) allowed more power to detect small declines (95%), but there was a high percentage (50%) of false detections. For all 3 methods, the proportion of declines estimated to be >80% was higher than the true proportion. Use of abundance data to detect species at risk of extinction may either fail to detect initial declines in abundance or have a high error rate.     

Conserving the abundance of nonthreatened species

Human modification of the environment is driving declines in population size and distributional extent of much of the world's biota. These declines extend to many of the most abundant and widespread species, for which proportionally small declines can result in the loss of vast numbers of individuals, biomass, and interactions. These losses could have major localized effects on ecological and cultural processes and services without elevating a species’ global extinction risk. Although most conservation effort is directed at species threatened with extinction in the very near term, the value of retaining abundance regardless of global extinction risk is justifiable based on many biodiversity or ecosystem service metrics, including cultural services, at scales from local to global. The challenges of identifying conservation priorities for widespread and abundant species include quantifying the effects of species’ abundance on services and understanding how these effects are realized as populations decline. Negative effects of population declines may be disconnected from the threat processes driving declines because of species movements and environment flows (e.g., hydrology). Conservation prioritization for these species shares greater similarity with invasive species risk assessments than extinction risk assessments because of the importance of local context and per capita effects of abundance on other species. Because conservation priorities usually focus on preventing the extinction of threatened species, the rationale and objectives for incorporating declines of nonthreatened species must be clearly articulated, going beyond extinction risk to encompass the range of likely harmful effects (e.g., secondary extinctions, loss of ecosystem services) if declines persist or are not reversed. Research should focus on characterizing the effects of local declines in species that are not threatened globally across a range of ecosystem services and quantifying the spatial distribution of these effects through the distribution of abundance. The case for conserving abundance in nonthreatened species can be made most powerfully when the costs of losing this abundance are better understood.     

Biotic Impoverishment and Homogenization in Unfragmented Forest Understory Communities

Abstract:  Ecological change is often hard to document because of a lack of reliable baseline data. Several recent then-versus-now surveys of temperate forest and grassland communities demonstrate losses of local plant species, but most are based on data from a single site. We resurveyed understory communities in 62 upland forest stands in northern Wisconsin (U.S.A.) for which quantitative baseline data exist from 50 years ago. These stands are within a largely unfragmented region but vary in species composition and successional stage. We collected data on changes in (1) total and native species richness, (2) the ratio of exotic to native species, (3) the relative abundance of habitat generalists, and (4) community similarity among sites. We also compared how these rates of change varied over time. Over the past 50 years, native species density declined an average of 18.5% at the 20-m² scale, whereas the ratio of exotic species to native species increased at 80% of all sites. Habitat generalists increased, and habitat specialists declined, accounting in part for an 8.7% rise in average similarity in species composition among sites. Most of these changes cannot be related to succession, habitat loss, or invasion by exotic species. Areas without deer hunting showed the greatest declines in native species density, with parks and research natural areas faring no better than unprotected stands. Animal-pollinated and animal-dispersed species also declined, particularly at unhunted sites. These results demonstrate the power of quantitative multistand data for assessing ecological change and identify overabundant deer as a key driver of community change. Because maintaining forest habitats alone fails to preserve plant diversity at local scales, local biotic simplification seems likely to continue in the region unless active efforts are taken to protect diversity.     

Taxonomic and Geographic Patterns of Decline for Threatened and Endangered Species in the United States

Abstract: Species listed under the U.S. Endangered Species Act (i.e., listed species) have declined to the point that the probability of their extinction is high. The decline of these species, however, may manifest itself in different ways, including reductions in geographic range, number of populations, or overall abundance. Understanding the pattern of decline can help managers assess extinction probability and define recovery objectives. Although quantitative data on changes in geographic range, number of populations, and abundance usually do not exist for listed species, more often qualitative data can be obtained. We used qualitative data in recovery plans for federally listed species to determine whether each listed species declined in range size, number of populations, or abundance relative to historical levels. We calculated the proportion of listed species in each state (or equivalent) that declined in each of those ways. Nearly all listed species declined in abundance, and range size or number of populations declined in approximately 80% of species for which those data were available. Patterns of decline, however, differed taxonomically and geographically. Declines in range were more common among vertebrates than plants, whereas population extirpations were more common among plants. Invertebrates had high incidence of range and population declines. Narrowly distributed plants and invertebrates may be subject to acute threats that may result in population extirpations, whereas vertebrates may be affected by chronic threats that reduce the extent and size of populations. Additionally, in the eastern United States and U.S. coastal areas, where the level of land conversion is high, a greater percentage of species’ ranges declined and more populations were extirpated than in other areas. Species in the Southwest, especially plants, had fewer range and population declines than other areas. Such relations may help in the selection of species’ recovery criteria.     

Analyzing Variability and the Rate of Decline of Migratory Shorebirds in Moreton Bay,Australia

Abstract: Estimating the abundance of migratory species is difficult because sources of variability differ substantially among species and populations. Recently developed state‐space models address this variability issue by directly modeling both environmental and measurement error, although their efficacy in detecting declines is relatively untested for empirical data. We applied state‐space modeling, generalized least squares (with autoregression error structure), and standard linear regression to data on abundance of wetland birds (shorebirds and terns) at Moreton Bay in southeast Queensland, Australia. There are internationally significant numbers of 8 species of waterbirds in the bay, and it is a major terminus of the large East Asian‐Australasian Flyway. In our analyses, we considered 22 migrant and 8 resident species. State‐space models identified abundances of 7 species of migrants as significantly declining and abundance of one species as significantly increasing. Declines in migrant abundance over 15 years were 43–79%. Generalized least squares with an autoregressive error structure showed abundance changes in 11 species, and standard linear regression showed abundance changes in 15 species. The higher power of the regression models meant they detected more declines, but they also were associated with a higher rate of false detections. If the declines in Moreton Bay are consistent with trends from other sites across the flyway as a whole, then a large number of species are in significant decline.     

Contribution of Urban Expansion and a Changing Climate to Decline of a Butterfly Fauna

Butterfly populations are naturally patchy and undergo extinctions and recolonizations. Analyses based on more than 2 decades of data on California's Central Valley butterfly fauna show a net loss in species richness through time. We analyzed 22 years of phenological and faunistic data for butterflies to investigate patterns of species richness over time. We then used 18–22 years of data on changes in regional land use and 37 years of seasonal climate data to develop an explanatory model. The model related the effects of changes in land‐use patterns, from working landscapes (farm and ranchland) to urban and suburban landscapes, and of a changing climate on butterfly species richness. Additionally, we investigated local trends in land use and climate. A decline in the area of farmland and ranchland, an increase in minimum temperatures during the summer and maximum temperatures in the fall negatively affected net species richness, whereas increased minimum temperatures in the spring and greater precipitation in the previous summer positively affected species richness. According to the model, there was a threshold between 30% and 40% working‐landscape area below which further loss of working‐landscape area had a proportionally greater effect on butterfly richness. Some of the isolated effects of a warming climate acted in opposition to affect butterfly richness. Three of the 4 climate variables that most affected richness showed systematic trends (spring and summer mean minimum and fall mean maximum temperatures). Higher spring minimum temperatures were associated with greater species richness, whereas higher summer temperatures in the previous year and lower rainfall were linked to lower richness. Patterns of land use contributed to declines in species richness (although the pattern was not linear), but the net effect of a changing climate on butterfly richness was more difficult to discern. Contribución de la Expansión Urbana y un Clima Cambiante a la Declinación de la Fauna de Mariposas     

Batrachochytrium dendrobatidis and the Collapse of Anuran Species Richness and Abundance in the Upper Manu National Park,Southeastern Peru

Abstract: Amphibians are declining worldwide, but these declines have been particularly dramatic in tropical mountains, where high endemism and vulnerability to an introduced fungal pathogen, Batrachochytrium dendrobatidis (Bd), is associated with amphibian extinctions. We surveyed frogs in the Peruvian Andes in montane forests along a steep elevational gradient (1200–3700 m). We used visual encounter surveys to sample stream‐dwelling and arboreal species and leaf‐litter plots to sample terrestrial‐breeding species. We compared species richness and abundance among the wet seasons of 1999, 2008, and 2009. Despite similar sampling effort among years, the number of species (46 in 1999) declined by 47% between 1999 and 2008 and by 38% between 1999 and 2009. When we combined the number of species we found in 2008 and 2009, the decline from 1999 was 36%. Declines of stream‐dwelling and arboreal species (a reduction in species richness of 55%) were much greater than declines of terrestrial‐breeding species (reduction of 20% in 2008 and 24% in 2009). Similarly, abundances of stream‐dwelling and arboreal frogs were lower in the combined 2008–2009 period than in 1999, whereas densities of frogs in leaf‐litter plots did not differ among survey years. These declines may be associated with the infection of frogs with Bd. B. dendrobatidis prevalence correlated significantly with the proportion of species that were absent from the 2008 and 2009 surveys along the elevational gradient. Our results suggest Bd may have arrived at the site between 1999 and 2007, which is consistent with the hypothesis that this pathogen is spreading in epidemic waves along the Andean cordilleras. Our results also indicate a rapid decline of frog species richness and abundance in our study area, a national park that contains many endemic amphibian species and is high in amphibian species richness.     

Effects of an Invasive Plant on Population Dynamics in Toads

When populations decline in response to unfavorable environmental change, the dynamics of their population growth shift. In populations that normally exhibit high levels of variation in recruitment and abundance, as do many amphibians, declines may be difficult to identify from natural fluctuations in abundance. However, the onset of declines may be evident from changes in population growth rate in sufficiently long time series of population data. With data from 23 years of study of a population of Fowler's toad (Anaxyrus [ = Bufo] fowleri) at Long Point, Ontario (1989–2011), we sought to identify such a shift in dynamics. We tested for trends in abundance to detect a change point in population dynamics and then tested among competing population models to identify associated intrinsic and extrinsic factors. The most informative models of population growth included terms for toad abundance and the extent of an invasive marsh plant, the common reed (Phragmites australis), throughout the toads’ marshland breeding areas. Our results showed density‐dependent growth in the toad population from 1989 through 2002. After 2002, however, we found progressive population decline in the toads associated with the spread of common reeds and consequent loss of toad breeding habitat. This resulted in reduced recruitment and population growth despite the lack of significant loss of adult habitat. Our results underscore the value of using long‐term time series to identify shifts in population dynamics coincident with the advent of population decline. Efectos de una Planta Invasora sobre las Dinámica Poblacional de Sapos     

Long-Term Population Changes of Native and Introduced Birds in the Alaka'i Swamp, Kaua'i

Abstract:  Within the last 30 years, five endemic bird species of the Alaka'i Swamp, Kaua'i, Hawai'i, have likely gone extinct. We documented population trends of the remaining avifauna in this time period to identify a common pattern in the Hawaiian Islands: decline of native species and expansion of introduced species. We conducted bird surveys over 100 km² of the Alaka'i and Kōke'e regions of Kaua'i in March–April 2000 to estimate population size, distribution, and range limits of seven native and six introduced forest birds. We compared the results with four previous surveys conducted over the last 30 years. Five of the seven native species we studied have fared well, maintaining sizeable populations (>20,000 individuals) and unchanged or increasing numbers. The endemic 'Akikiki ( Oreomystis bairdi ), however, declined from 6296 (SE ± 1374) to 1472 (SE ± 680) individuals and exhibited range contraction from 88 to 36 km². The 'I'iwi ( Vestiaria coccinea ) also experienced a decline and contraction, though not as severe. Populations of several introduced forest birds are increasing, but all species, excluding the Japanese White-eye ( Zosterops japonicus ), were at low numbers (<5,500 individuals in survey area). One introduced species, the Japanese Bush-Warbler ( Cettia diphone ) recently invaded, whereas another, the Red-billed Leiothrix ( Leiothrix lutea ), has been extirpated. Two hurricanes in the past 20 years appear to have most strongly affected nectarivores and may have contributed to the decline or extinction of several other species. Overall, native bird populations on Kaua'i have exhibited species-specific responses to limiting factors. Although most native populations appear stable, the extant native avifauna is vulnerable as a result of limited distributions and the potential for widespread habitat degradation.     

Catastrophic Decline in Mollusc Diversity in Eastern Tasmania and Its Concurrence with Shellfish Fisheries

Abstract:  We used historical patterns of deposition of mollusc shells to infer changes to inshore benthic assemblages in the southeastern Tasmanian region over the past 120 years. We identified and counted shells in slices embedded within 1m long ²¹⁰Pb-dated sediment cores were collected at 13 sites in water depths of 8–16 m. Declines in mollusc species richness and shell production occurred during the past century at all sites studied, with a mean decline per 5-cm sediment slice from 21 species in 1890 to 7 species in 1990 and in shell abundance from 150 to 30 individuals over the same period. The time course of decline notably corresponded with the history of the scallop dredge fishery, presumably either because scallop dredging caused general declines in populations of mollusc species or because other factors caused a catastrophic regional decline in molluscs that included scallops. As a consequence, the fishery was forced to close. Of major concern is that losses had not previously been recognized but extended throughout the 100-km coastal span of the study. Given that fishing and other anthropogenic impacts, as well as a lack of observational data, are virtually ubiquitous for the coastal zone, major recent losses in mollusc biodiversity may be globally widespread but have gone unnoticed.