Integrated modeling of flood flows and tidal hydrodynamics over a coastal floodplain

The interactions of physical processes between estuaries and upstream river floodplains are of great importance to the fish habitats and ecosystems in coastal regions. Traditionally, a hydraulic analysis of floodplains has used one- or two-dimensional models. While this approach may be sufficient for planning the engineering design for flood protection, it is inadequate when floodwaters inundate the floodplain in a complex manner. Similarly, typical estuarine and coastal modeling studies do not consider the effect of upstream river floodplains because of the technical challenge of modeling wetting and drying processes in floodplains and higher bottom elevations in the upstream river domain. While various multi-scale model frameworks have been proposed for modeling the coastal oceans, estuaries, and rivers with a combination of different models, this paper presents a modeling approach for simulating the hydrodynamics in the estuary and river floodplains, which provides a smooth transition between the two regimes using an unstructured-grid, coastal ocean model. This approach was applied to the Skagit River estuary and its upstream river floodplain of Puget Sound along the northwest coast of North America. The model was calibrated with observed data for water levels and velocities under low-flow and high-flood conditions. This study successfully demonstrated that a three-dimensional estuarine and coastal ocean model with an unstructured-grid framework and wetting-drying capability can be extended much further upstream to simulate the inundation processes and the dynamic interactions between the estuarine and river floodplain regimes.     

Influence of habitat on abundance and size structure of a large temperate-reef fish, Achoerodus viridis (Pisces: Labridae)

The relationship between densities of Achoerodus viridis (Pisces: Labridae) and reef habitats at various localities within New South Wales (NSW), Australia was examined. Types of habitats were quantified at inner, mid and outer estuarine locations in each of two estuaries (Botany Bay and Port Jackson) to determine whether purported patterns of movement from estuaries could be related to differences in habitat. Although the same types of habitat were generally found at all locations, differences in the proportion of habitat types were found between shallow and deep reefs and among inner, mid and outer estuarine locations for both estuaries. Shallow habitats were usually dominated by Ecklonia radiata, turf and/or fringe habitat in Botany Bay, whereas deep sites were generally dominated by urchin-grazed barrens habitat and, sometimes, sponge- and ascidian-dominated deep reef. Shallow sites in Port Jackson were dominated by a mixture of habitats, as were deep reefs at mid-estuarine locations. Other deep reefs in Port Jackson were dominated by E. radiata (inner estuarine) or barrens (outer estuarine) habitat. Thus, patterns of habitat cover were not consistent between estuaries and numbers of fish could not be related to proportional representation of habitat on reefs along estuarine gradients. Univariate and multivariate analyses showed that there was little evidence that any size class of fish was correlated with the proportional representation of a particular habitat or group of habitats. Counts of fish that focused on barrens and E. radiata forest habitats over a period of 10 yr showed that similar numbers and all sizes of fish were found in the two types of habitat. Greater numbers of small fish were, however, found in the E. radiata forest habitat than in the barrens habitat. Estimates of abundance along the coast of NSW (100s to 1000 km) in a range of habitats (e.g. ascidian-dominated reef, kelp forest, urchin-grazed barrens) showed that there was no indication that a particular habitat consistently had greater numbers of A. viridis than other habitats. Therefore, A. viridis of a range of sizes appears to be flexible in its use of habitats on reefs. Received: 24 December 1997 / Accepted: 23 June 1998     

Variation in concentrations of trace elements in otoliths and eye lenses of a temperate reef fish, Parma microlepis, as a function of depth, spatial scale, and age

 Territorial Parma microlepis (Günther) (Pomacentridae) were collected at different depths, at three sites in each of four estuaries near Sydney, Australia. Element concentrations were measured by induc- tively-coupled–plasma mass spectrometry. Significant differences in concentrations of Mn and Ba were found in the otoliths of fish sampled in different depth strata, with concentrations generally greatest in fish found in water <4 m deep. Depth-related differences varied among estuaries (e.g. 0 to 1.2 μg Ba g⁻¹ otolith). In most estuaries there was a negative linear relationship between concentrations of Mn and Ba in otoliths and actual depth. Great variation was found within an estuary among sites separated by 0.5 to 3 km. In the eye lenses, concentrations of Rb differed according to depth of capture of fish. The age of fish (1+ to 34 yr) had no influence on the concentrations of elements in otoliths or lenses. Multivariate comparisons of elemental composition (= fingerprints) detected significant differences among depth strata. Fish collected from shallow water had the clearest multivariate classification according to depth. There was a close match between our shallow strata and the average depths reached by low-salinity/high-temperature estuarine plumes. The element composition of whole otoliths and lenses represents average concentrations experienced by the fish. The temporal resolution of differences in ambient conditions is likely to be coarse in the fish (i.e. months to years). Received: 9 April 1999 / Accepted: 29 February 2000     

Aquatic and terrestrial organic matter in the diet of stream consumers: implications for mercury bioaccumulation

The relative contribution of aquatic vs. terrestrial organic matter to the diet of consumers in fluvial environments and its effects on bioaccumulation of contaminants such as mercury (Hg) remain poorly understood. We used stable isotopes of carbon and nitrogen in a gradient approach (consumer isotope ratio vs. periphyton isotope ratio) across temperate streams that range in their pH to assess consumer reliance on aquatic (periphyton) vs. terrestrial (riparian vegetation) organic matter, and whether Hg concentrations in fish and their prey were related to these energy sources. Taxa varied in their use of the two sources, with grazing mayflies (Heptageniidae), predatory stoneflies (Perlidae), one species of water strider (Metrobates hesperius), and the fish blacknose dace (Rhinichthys atratulus) showing strong connections to aquatic sources, while Aquarius remigis water striders and brook trout (Salvelinus fontinalis) showed a weak link to in-stream production. The aquatic food source for consumers, periphyton, had higher Hg concentrations in low-pH waters, and pH was a much better predictor of Hg in predatory invertebrates that relied mainly on this food source vs. those that used terrestrial C. These findings suggest that stream biota relying mainly on dietary inputs from the riparian zone will be partially insulated from the effects of water chemistry on Hg availability. This has implications for the development of a whole-system understanding of nutrient and material cycling in streams, the choice of taxa in contaminant monitoring studies, and in understanding the fate of Hg in stream food webs.     

The Metal Content of Fish and Shellfish in Liverpool Bay

Liverpool Bay supports a productive commercial fishery yet at the same time is also used as a site for the disposal of waste by dumping, as well as receiving discharge of effluent from pipelines, rivers and estuaries. This paper summarizes the results of the monitoring programme of fish and shellfish quality in Liverpool Bay carried out in recent years including two special surveys conducted in and around the sewage sludge dumping site in 1980 and 1981. The concentrations of trace metals are discussed in relation to inputs into the bay. Mercury concentrations in fish appear to vary with the two major imputs (sewage sludge dumping and industrial discharges). There is no evidence of widespread elevated concentrations of cadmium, lead, zinc and copper in fish and shellfish from the bay but there is some evidence of local contamination by these metals. None of the elevated concentrations of metals found appear to be significant from a public health viewpoint.     

The Metal Content of Fish and Shellfish in Liverpool Bay

Liverpool Bay supports a productive commercial fishery yet at the same time is also used as a site for the disposal of waste by dumping, as well as receiving discharge of effluent from pipelines, rivers and estuaries. This paper summarizes the results of the monitoring programme of fish and shellfish quality in Liverpool Bay carried out in recent years including two special surveys conducted in and around the sewage sludge dumping site in 1980 and 1981. The concentrations of trace metals are discussed in relation to inputs into the bay. Mercury concentrations in fish appear to vary with the two major imputs (sewage sludge dumping and industrial discharges). There is no evidence of widespread elevated concentrations of cadmium, lead, zinc and copper in fish and shellfish from the bay but there is some evidence of local contamination by these metals. None of the elevated concentrations of metals found appear to be significant from a public health viewpoint.     

Mercury distribution,speciation and potential ecological risk assessment in sediments from Lake Taihu,China

Abstract

Twenty-one surface sediments collected from seven surroundings areas of Lake Taihu in two different years were analyzed for total mercury (THg) concentrations, physicochemical characteristics and speciation using a sequential extraction method to assess spatial distribution, sources, and potential ecological risk. Surface sediments from Lake Taihu contained elevated levels of Hg in two sampling years with THg levels ranging from 77 to 346?ng/g (mean 145?ng/g) in October 2010 and ranging from 122 to 573?ng/g (mean 266?ng/g) in November 2012, respectively. The mean THg concentrations in all studied surface sediments exhibited an increasing trend over time. The oxidizable fraction (F3) and residual fraction (F4) were the predominant Hg species in sediments, while more mobile Hg phases of acid-soluble fraction (F1) and reducible fraction (F2) made up less than 0.5% THg. Significant relationships were found between total organic carbon (TOC) and THg and geochemical speciation indicating an important role for organic matter in affecting distribution, mobility, and bioavailability of Hg in sediments. As evidenced by Hakanson’s potential risk index the total ecological risk of Hg was low in the entire Lake Taihu in 2010 but considered moderate in Zhushan Bay, West Coast, and Meiliang Bay in 2012. These findings provide conservation managers with information needed to more effectively regulate the environment of Lake Taihu.     

Ecological responses to reductions in freshwater supply and quality in South Africa’s estuaries: lessons for management and conservation

Fresh water, a fundamental element of all estuarine ecosystems, is South Africa’s most limited natural resource. Recent projections indicate that by the year 2020 the country will be utilizing all its exploitable freshwater sources. Steeply increasing demands by a rapidly growing population on this limited commodity have already resulted in a severe reduction of water supplies to natural users such as estuaries — this trend is predicted to increase in the future. Concurrent with excessive water abstraction, poor land husbandry (e.g. soil erosion) in many catchment basins and pollution (e.g. salinization) in return flows have led to a serious deterioration in water quality. In contrast, a review of estuarine responses to varying flow regimes stresses the strong dependence of local systems on riverine fresh water inputs of adequate quantity and quality. Freshwater dependence is i.a. expressed in: flooding events that scour accumulated sediments, riverine nutrient input to drive estuarine phyto- and zooplankton production, axial salinity gradients that increase habitat and species diversity, and maintenance of open tidal inlets that prevent salinity and temperature extremes and facilitate larval exchange, fish migrations and tidal flushing of salt marshes. Thus, estuarine conservation will have to encompass management of rivers and watersheds and play an increasingly political role in decision processes concerning water allocations among ‘human’ and ‘natural’ users.     

Environmental determinants of distribution and foraging behaviour of cormorants (Phalacrocorax spp.) in temperate estuarine habitats

The distribution and behaviour of cormorants in estuarine environments was examined on the central coast of New South Wales, Australia, with respect to habitat associations at different spatial scales. No consistent variation in abundance was found for four species of cormorants (great Phalacrocorax carbo, pied P. varius, little black P. sulcirostris, and little pied P. melanoleucos) with state of tide (high and low) and time of day (early, middle, and late) at five estuarine locations. Differences in abundance were found among locations that were not confounded by short-term temporal variation (i.e. time of day and tide). Differences in abundance were detected among habitats (e.g. bays, creeks, and headlands) separated by hundreds of metres to kilometres in different estuaries. Cormorants of all species were rare on the open coast and near the entrance of estuaries. Abundances of cormorants varied greatly within and among creeks, bays, and river channels. Presence of seagrass beds explained much of this variation and most of the cormorants swimming and feeding were found near seagrass. Mapping of seagrass beds and the positions of cormorants at scales of metres to hundreds of metres showed a close relationship between the presence of swimming and roosting beds and the presence of seagrass beds for P. melanoleucos and for P. carbo. We argue that cormorants make decisions to visit particular estuarine habitats, especially those with seagrass, where many types of prey (e.g. fish and crustaceans) are probably most abundant. These choices must be interpreted in the context of decisions that cormorants make on scales of hundreds to thousands of kilometres during periodic excursions to the interior of Australia. Further, environmental threats to seagrass beds could impinge on these mobile visitors to the same extent as on more permanent residents. Received: 14 February 2000 / Accepted: 17 July 2000     

Recent Invasions of the Gulf of Maine: Three Contrasting Ecological Histories

Introduced species are common members of estuarine communities where their role as competitors and predators is of concern, This paper examines the invasion of Gulf of Maine benthic habitats by the ecologically similar alien invertebrates Styela clava, Botrylloides diegensis , and Membranipora membranacea .
Styela clava increased slowly in abundance at study sites in Beverly, Massachusetts and Portsmouth, New Hampshire. We found no evidence of competitive dominance by S. clava , even though it is the competitive dominant in similar habitats elsewhere. Botrylloides diegensis rapidly became a dominant species after its arrival in the Great Bay Estuary, but this dominance was short-lived. B. diegensis persists in the estuary as an early colonist of primary space and as an epibiont on secondary substrates in established communities. Membranipora membranacea became the dominant epiphyte on laminarian kelps within two years. Although M. membranacea overgrew the native epiphytes Obelia geniculata and Electra pilosa in the overwhelming majority of encounters these native species are more common on other algal hosts. Therefore, competitive dominance is not likely a factor in the successful invasion of the Gulf of Maine by M. membranacea .
These species provide evidence for opposing views of the role of competition in mediating community invasion. We show that ecological similarity among species is not an accurate criterion to predict either the mechanism of invasion or the means of persistence. In addition, these data indicate that biological invasions must be examined on broad spatial and temporal scales; short-term or narrowly focused studies can lead to incorrect conclusions.     

Lake to land subsidies: experimental addition of aquatic insects increases terrestrial arthropod densities

Aquatic insects are a common and important subsidy to terrestrial systems, yet little is known about how these inputs affect terrestrial food webs, especially around lakes. Myvatn, a lake in northern Iceland, has extraordinary midge (Chironomidae) emergences that result in large inputs of biomass and nutrients to terrestrial arthropod communities. We simulated this lake-to-land resource pulse by collecting midges from Myvatn and spreading their dried carcasses on 1-m2 plots at a nearby site that receives very little midge deposition. We hypothesized a positive bottom-up response of detritivores that would be transmitted to their predators and would persist into the following year. We sampled the arthropod community once per month for two consecutive summers. Midge addition resulted in significantly different arthropod communities and increased densities of some taxa in both years. Detritivores, specifically Diptera larvae, Collembola, and Acari increased in midge-addition plots, and so did some predators and parasitoids. Arthropod densities were still elevated a year after midge addition, and two years of midge addition further increased the density of higher-order consumers (e.g., Coleoptera and Hymenoptera). Midge addition increased arthropod biomass by 68% after one year and 108% after two years. By manipulating the nutrient pulse delivered by midges we were able to elucidate food web consequences of midge deposition and spatial and temporal dynamics that are difficult to determine based on comparative approaches alone. Resources cross ecosystem boundaries and are assimilated over time because of life-history strategies that connect aquatic and terrestrial food webs and these systems cannot be fully understood in isolation from each other.     

Estimating abundance without recaptures of marked pallid sturgeon in the Mississippi River

Abundance estimates are essential for assessing the viability of populations and the risks posed by alternative management actions. An effort to estimate abundance via a repeated mark‐recapture experiment may fail to recapture marked individuals. We devised a method for obtaining lower bounds on abundance in the absence of recaptures for both panmictic and spatially structured populations. The method assumes few enough recaptures were expected to be missed by random chance. The upper Bayesian credible limit on expected recaptures allows probabilistic statements about the minimum number of individuals present in the population. We applied this method to data from a 12‐year survey of pallid sturgeon (Scaphirhynchus albus) in the lower and middle Mississippi River (U.S.A.). None of the 241 individuals marked was recaptured in the survey. After accounting for survival and movement, our model‐averaged estimate of the total abundance of pallid sturgeon ≥3 years old in the study area had a 1%, 5%, or 25% chance of being <4,600, 7,000, or 15,000, respectively. When we assumed fish were distributed in proportion to survey catch per unit effort, the farthest downstream reach in the survey hosted at least 4.5–15 fish per river kilometer (rkm), whereas the remainder of the reaches in the lower and middle Mississippi River hosted at least 2.6–8.5 fish/rkm for all model variations examined. The lower Mississippi River had an average density of pallid sturgeon ≥3 years old of at least 3.0–9.8 fish/rkm. The choice of Bayesian prior was the largest source of uncertainty we considered but did not alter the order of magnitude of lower bounds. Nil‐recapture estimates of abundance are highly uncertain and require careful communication but can deliver insights from experiments that might otherwise be considered a failure.     

Denitrification potential in a Louisiana wetland receiving diverted Mississippi River water

Excess nitrate in Mississippi River water entering offshore areas is reported to contribute to low oxygen (hypoxia) conditions in the Gulf of Mexico. Excessive algal growth driven by the excess nitrogen results in a decrease in dissolved oxygen in bottom water. Reintroduction of Mississippi River waters into a Louisiana coastal wetland has the potential to reduce the amount of nitrate reaching offshore waters. In this study, reduction in the concentration of added NO₃^- was determined in sediment-water-columns collected from a wetland site in Breton Sound estuary receiving nutrient inputs from the Mississippi River. The capacity of a wetland to process nitrate in floodwater was determined in the laboratory. The rates of NO₃^- removal (determined from change in nitrate concentration in the floodwater) averaged 97 mg N m^-2 d^-1 over 16 d for a 1750-mg NO₃-N m^-2 addition, and 170 mg N m^-2 d^-1 over 16 d for a 3500-mg NO₃-N m^-2 addition. The total N₂O-N emissions from the 1750- and 3500-mg NO₃-N m^-2 additions were 19 and 54 mg N m^-2 accounting for 1.1% and 1.5% of the applied NO₃-N, respectively. Using the acetylene-inhibition technique, the average denitrification rate was determined to be 57 and 87 mg N m^-2 d^-1 (21 and 32 g N m^-2 yr^-1) during the most active denitrification period of 5 d after incubation for 1750 and 3500 mg NO₃^--N m^-2 of added nitrate in floodwater, respectively. The total N evolved over 11 d as N₂O + N₂ was equivalent to 436 and 921 mg N m^-2 (24.9% and 26.3%, respectively, of added N). Increasing the amount of NO₃^- applied to the overlying water increased the rate of NO₃^- loss and N₂O emission significantly. The thickness of the oxidized surface sediment layer was also influenced by the NO₃^- application to the floodwater with a significant linear correlation between nitrate addition and thickness of the oxidized layer (r = 0.9998, p = 0.01). This study indicates that wetlands receiving diverted Mississippi River water have the potential to process and remove NO₃^- in the river water, reducing the amount of NO₃^- reaching to offshore areas.     

Eutrophication and trophic structure in response to the presence of the eelgrass <Emphasis Type="Italic">Zostera noltii</Emphasis>

In estuaries, eelgrass meadows contribute to fundamental ecosystem functions of estuaries, providing food to several predators and buffering the negative effects of eutrophication. We asked whether the presence of the eelgrass Zostera noltii decreased the nitrogen concentration in the overlying water, affected the sources of nitrogen sequestrated by primary producers and changed the benthic and pelagic food web structures. We also studied the importance of these food webs in providing food to fish. We compared bare sediment to sediment covered by a Z. noltii meadow, and examined nutrient concentrations in the water column and δ¹⁵N in primary producers as indicators of anthropogenic inputs of nutrients. We then measured both δ¹³C and δ¹⁵N in the tissues of plants and consumers to establish food web structures. There were no differences in the concentrations and sources of nitrogen between sites. Rather, δ¹⁵N values indicated anthropogenic inputs of N (e.g. sewage discharges, agriculture) in both sites. There were no major differences in the structure of the planktonic food web, which was in part sustained by particulate organic matter and supported most predator fish, and in the structure of the benthic food web. Nonetheless, there were differences in the sources of food for omnivore consumers and for the detritivore Scrobicularia plana. Overall, the benthic food web did not use food derived from the eelgrass or macroalgae deposited on the substratum. Suspension feeders used particulate and sediment organic matter, whereas the δ¹³C and δ¹⁵N values of the other consumers indicated a likely contribution of benthic microalgae. Furthermore, in both habitats we found large variability in the isotope signatures of benthic macrofauna consumers, which did not allow distinguishing clearly different trophic groups and indicated a high level of omnivory and a mixed diet opportunistically making use of the availability of food in the surroundings.     

Pollution of River Mahaweli and farmlands under irrigation by cadmium from agricultural inputs leading to a chronic renal failure epidemic among farmers in NCP, Sri Lanka

Chronic renal failure (CRF) associated with elevated dietary cadmium (Cd) among farming communities in the irrigated agricultural area under the River Mahaweli diversion scheme has reached a significantly higher level of 9,000 patients. Cadmium, derived from contaminated phosphate fertilizer, in irrigation water finds its way into reservoirs, and finally to food, causing chronic renal failure among consumers. Water samples of River Mahaweli and its tributaries in the upper catchment were analyzed to assess the total cadmium contamination of river water and the possible source of cadmium. Except a single tributary (Ulapane Stream, 3.9?μg?Cd/l), all other tested tributaries carried more than 5?μg?Cd/l, the maximum concentration level accepted to be safe in drinking water. Seven medium-sized streams carrying surface runoff from tea estates had 5.1-10?μg?Cd/l. Twenty larger tributaries (Oya), where the catchment is under vegetable and home garden cultivation, carried 10.1-15?μg?Cd/l. Nine other major tributaries had extremely high levels of Cd, reaching 20?μg?Cd/l. Using geographic information system (GIS), the area in the catchment of each tributary was studied. The specific cropping system in each watershed was determined. The total cadmium loading from each crop area was estimated using the rates and types of phosphate fertilizer used by the respective farmers and the amount of cadmium contained in each type of fertilizer used. Eppawala rock phosphate (ERP), which is mostly used in tea estates, caused least pollution. The amount of cadmium in tributaries had a significant positive correlation with the cadmium loading of the cropping system. Dimbula Tea Estate Stream had the lowest Cd loading (495.9?g/ha/year), compared with vegetable-growing areas in Uma Oya catchment with 50,852.5?g?Cd/ha/year. Kendall's τ rank correlation value of total Cd loading from the catchment by phosphate fertilizer used in all crops in the catchment to the Cd content in the tributaries was +0.48. This indicated a major contribution by the cropping system in the upper catchment area of River Mahaweli to the eventual Cd pollution of river water. Low soil pH (4.5-5.2), higher organic matter content (2-3%), and 18-20?cmol/kg cation exchange capacity (CEC) in upcountry soil have a cumulative effect in the easy release of Cd from soil with the heavy surface runoff in the upcountry wet zone. In view of the existing water conveyance system from upcountry to reservoirs in North Central Province (NCP) through diversion of River Mahaweli, in addition to their own nonpoint pollution by triple superphosphate fertilizer (TSP), this demands a change in overall upper catchment management to minimize Cd pollution through agriculture inputs to prevent CRF due to elevated dietary cadmium among NCP farmers.     

Histology of Sculpin spp. in East Greenland. II. Histopathology and trace element concentrations

Abstract

For many years, the sculpin has been utilized as a sentinel monitoring species for anthropogenic impacts on the marine environment. To further develop its potential as a screening model body burden of several trace elements, including cadmium (Cd), copper (Cu), mercury (Hg), lead (Pb) and selenium (Se), were investigated. In addition, histopathology in shorthorn sculpins (Myoxocephalus scorpius; n?=?20) and fourhorn sculpins (Myoxocephalus quadricornis; n?=?10) were examined at three sites around the Scoresby Sound settlement in Central East Greenland. Fourhorn sculpins caught at the most distant site from the settlement, contained significantly higher hepatic Cu and Cd concentrations as well as significantly elevated gill Pb levels compared to the shorthorn sculpins collected at two other sites closer to the settlement. Histological examinations showed that fish with significantly higher concentrations of hepatic Cd and Se exhibited greater nuclear alterations, interstitial hyperplasia/hypertrophy, interstitial mononuclear infiltrations and granulomas. Further, fish with higher Cd and Cu gill tissue levels displayed a significantly higher number of cytoplasmic alterations and lamellar epithelium lifting, hypertrophic and hyperplastic epithelium along with mucus cell hyperplasia. While the presence of liver lesions were not species or sex-specific, the presence of gill lesions decreased in the order female fourhorn sculpins?>?female shorthorn sculpins?>?male fourhorn sculpins?>?male shorthorn sculpins. Hepatic Hg concentrations exceeded known lowest observable effect doses (LOED) for fish (0.1–0.5?μg g^?1 ww) in 27% of fish, while liver Cd residues in 80% exceeded LOED (0.42–1.8?μg g^?1 ww). Based upon these results, data suggest that using the sculpin as a valuable sentinel fish species histopathology may serve as a reliable tool for assessing marine ecosystem exposure to trace metals. However, confounding physiological and ecological factors also need to be considered.     

Der Fischrückgang in der oberen Donau

Background During the last years, a decrease in fish populations has been documented for several river systems in Europe and North America. Since more than 20 years, similar developments have been documented for the upper Danube River between Sigmaringen and Ulm. The grayling (Thymallus thymallus) represents one of the most affected fish species in the upper Danube, and notable decrease has also been recorded for other species such as the European barbel (Barbus barbus). Despite intensive and continuous stocking and improvement of water quality along the Danube since the 1970s, this negative development of fish populations could not be stopped. Aim This article has been designed to give an overview on various investigations into the decline of fish in the upper Danube River. The major focus of this paper is on the presentation of a weight-of-evidence study carried out since 2003 at the Department of Zoology at the University of Heidelberg. Results and discussion During the 1920s, major parts of the upper Danube River were corrected, thus causing dramatic changes in the hydromorphology of the river. The macrozoobenthos, which represents an important source of nutrition for several fish species, depends on the morphological conditions of a river; recent investigations, however, could not show any dramatic changes in macrozoobenthos composition. Earlier investigations of the Danube River primarily focused on water quality, which has, indeed, been continuously improved by extensive modernization of wastewater treatment plants. Contamination by priority organic pollutants in sediments was not given any attention until the mid 1990s, when a clear decline of, e.?g., PAH concentrations were documented. However, results of more recent analyses showed very high PAH concentrations in two sediment samples (Schwarzach Σ 16 PAHs = 26 mg/kg; Öpfingen Σ 16 PAHs = 5 mg/kg). In 2002, the first ecotoxicological investigations were performed at the upper Danube River. The results of a pilot study showed a high ecotoxicological burden for selected sampling sites. As a conclusion of this study, a weight-of-evidence investigation was initiated to make an attempt to identify major pollutants and possible causes for the fish decline. In addition to, e.?g., liver ultrastructure analyses in barbel, the micronucleus test was used as a definite mutagenicity test using erythrocytes and liver samples. The results of the different in vitro tests showed very good correlation well with in situ parameters. Outlook The investigations within this weight-of-evidence study showed that the pollution situation of the Danube is, indeed, significant enough to potentially affect fish populations. However, further investigations are needed to clarify the specific causes for the fish decline. A bioassay-directed fractionation study is underway to identify specific pollutants as well as their sources. This study will also assess the endocrine disrupting potential of Danube sediments via histopathological analyses of gonads of field fish in combination with different in vitro tests. Furthermore, in the planned joint project COMPSEARCH, comparative investigations will evaluate the ecotoxicological hazard potential of different pollution sources and consequences of changes in land use.     

Distribution and behaviour of polycyclic aromatic hydrocarbons in subtropical river estuary,Okinawa, Japan

Surface water samples were collected along the salinity gradient of Manko estuary in Okinawa, Japan, between January and November 2012, to examine spatial and temporal variability in the distribution, composition, behaviour, and sources of particulate polycyclic aromatic hydrocarbons (PAHs). Concentrations of total particulate PAHs ranged from 169.7?ng?g^?1 at riverine station (N1) in November 2012 to 922?ng?g^?1 at another riverine station (K3) in May 2012. Based on observed environmental behaviour, particularly relationships to organic matter, the PAHs appear divisible into two groups: group I (low molecular weight) PAHs were characterised by low particles affinity and strong correlations with a pool of autochthonous organic matter (e.g. high concentrations of polyunsaturated fatty acids), reflecting processes controlling their delivery to the estuary; and, in contrast, group II (high molecular weight) PAHs were characterised by high particles affinity and exhibited estuarine distribution primarily controlled by suspended solid load and inputs from terrigenous sources through river inflows. This relationship, coupled with isomer ratios indicative of combined mixed sources from petroleum and petroleum combustions, indicates that terrestrial run-off is the dominant mode of delivery of particulate PAHs in the estuary. The relationships between distinct groups of PAHs and lipid biomarkers demonstrated in this study suggest that very specific pools of particulate organic matter, as opposed to concentrations of particulate organic carbon alone, can be important in the transport and fate of hydrophobic contaminants.     

Ichthyofaunas of a temperate estuary and adjacent marine embayment. Implications regarding choice of nursery area and influence of environmental changes

A fine-mesh seine net was used at regular intervals to collect fishes from the entrance channel and basin of the Blackwood River Estuary (south-western Australia), from Deadwater Lagoon, which is joined to the entrance channel by a narrow and shallow water-course and thus constitutes part of this estuary, and from Flinders Bay into which the estuary discharges. Sampling was at six-weekly intervals between February and December 1994. The juveniles of some marine species, such as Pelates sexlineatus, Rhabdosargus sarba and Aldrichetta forsteri, were either found only in the estuary or were in far higher densities in the estuary than in Flinders Bay. In contrast, the juveniles of some other marine species, such as Sillago schomburgkii, were relatively abundant in both environments, while others such as S. bassensis, Pelsartia humeralis, Lesueurina platycephala and Spratelloides robustus were either far more abundant in Flinders Bay or entirely restricted to this marine embayment. The various marine species found in inshore waters thus apparently vary considerably in their “preference” for estuaries as nursery areas. Although some marine species were abundant in the shallows of the estuary, the fish fauna of these waters was dominated by the estuarine-spawning species Leptatherina wallacei, Favonigobius lateralis, L. presbyteroides and Atherinosoma elongata. The above regional differences help account␣for the very marked difference that was found between the compositions of the shallow-water␣ichthyofaunas of Flinders Bay and each of the three estuarine regions. The ichthyofaunal compositions of the basin and channel underwent pronounced changes during winter, when freshwater discharge increased markedly and salinities in the estuary thus declined precipitously. This faunal change was mainly attributable to the emigration of marine stragglers, a reduction in the densities of marine estuarine-opportunist species such as Pelates sexlineatus and R. sarba, and the immigration of large numbers of both young 0+ Aldrichetti forsteri from the sea and of L. wallacei from the river. Although most of the above species were also abundant in Deadwater Lagoon, the ichthyofaunal composition of this region did not undergo the same seasonal changes, presumably due to the lack of riverine input and thus the maintenance of relatively high salinities throughout the year. The number of marine straggler species was much lower in Deadwater Lagoon than in the estuary basin, reflecting a far more restricted tidal exchange with the entrance channel. However, the overall density of fishes was far higher in Deadwater Lagoon than in the estuary basin or entrance channel, due mainly to the far higher densities of the estuarine species Atherinosoma elongata and L. wallacei and of the 0+ age class of the marine species R. sarba. The high densities of certain species in Deadwater Lagoon are assumed to be related, at least in part, to the high level of productivity and protection that is provided by the presence of patches of Ruppia megacarpa, an aquatic angiosperm that was not present in the estuary basin or entrance channel. Received: 3 December 1996 / Accepted: 19 December 1996     

Microbial RNA and DNA synthesis in marine sediments

A technique for measuring rates of RNA and DNA synthesis in sedimentary microbial communities has been adapted from methods developed for marine and freshwater microplankton research. The procedure measures the uptake, incorporation and turnover of exogenous [2, ³H]-adenine by benthic microbial populations. With minor modification, it is applicable to a wide range of sediment types. Measurement of nucleic acid synthesis rates are reported from selected benthic marine environments, including coral reef sediments (Kaneohe Bay, Oahu, Hawaii), intertidal beach sands (Oahu and southern California) and California borderland basin sediment (San Pedro Basin), and comparisons are made to selected water-column microbial communities. Biomass-specific rates of nucleic acid synthesis in sediment microbial communities were comparable to those observed in water-column assemblages (i.e., 0.02 to 2.0 pmol deoxyadenine incorporated into DNA [ng ATP]^-1 h^-1 and 0.2 to 8.9 pmol adenine incorporated into RNA [ng ATP]^-1 h^-1). DNA synthesis rates were used to calculate carbon production estimates ranging from 2 g C cm^-3 h^-1 in San Pedro Basin sediment (880 m water depth) to 807 g C cm^-3 h^-1 in coral reef sediment from the Kaneohe Bay. Microbial community specific growth rate, (d^-1), estimated from DNA synthesis rates in surface sediments ranged from 0.1 in San Pedro Basin to 4.2 in Scripps Beach (La Jolla, California) intertidal sand.