Microbial diversity and ecological networks as indicators of environmental quality

Evaluating the quality of ecosystems in terms of biological patrimony and functioning is of critical importance in the actual context of intensified human activities. Microbial diversity is commonly used as a bioindicator of ecosystems functioning. However, there is a lack of sensitivity of microbial diversity indicators in the case of moderate and chronic environmental degradation, such as atmospheric deposition of pollutants, agricultural practices, diffuse pollution by wastewater and climate change. As a consequence, there is a need for alternative bioindicators of soils and water quality. Here, we discuss the interest of adopting a more integrative approach based on biotic interaction networks beyond the simple diversity indicators. We review how the various biotic interactions can be integrated in the various microbial networks such as trophic, mutualistic and co-occurrence networks. Then we discuss the efficiency of microbial networks and associated metrics to detect changes in microbial communities. We conclude that the connectance, the number of links and the average degree of co-occurrence networks could vary from 10 to 50% in response to minor perturbations when microbial diversity parameters remain stable. Finally, we analyze studies that aimed at linking microbial networks and activity to evaluate the potential of such networks for providing simple and operational indicators of ecosystem quality and functioning.     

Influence of planform geometry and momentum ratio on thermal mixing at a stream confluence with a concordant bed

The effects of planform geometry and momentum flux ratio on thermal mixing at a stream confluence with concordant bed morphology are investigated based on numerical simulations that can capture the dynamics of large-scale turbulence. In two simulations, the bathymetry and asymmetrical planform geometry are obtained from field experiments and the momentum flux ratio is set at values of one and four. These two conditions provide the basis for studying differences in thermal mixing processes at this confluence when the wake mode and the Kelvin–Helmholtz mode dominate the development of coherent structures within the mixing interface (MI). The effects of channel curvature and angle between the two incoming streams on thermal mixing processes are investigated based on simulations conducted with modified planform geometries. Two additional simulations are conducted for the case where the upstream channels are parallel but not aligned with the downstream channel and for the zero-curvature case where the upstream channels are parallel and aligned with the downstream channel. The simulations highlight the influence of large-scale coherent structures within the MI and of streamwise-oriented vortical (SOV) cells on thermal mixing processes within the confluence hydrodynamics zone. Simulation results demonstrate the critical role played by the SOV cells in promoting large-scale thermal mixing for cases when such cells form in the immediate vicinity of the MI and in modifying the shape of the thermal MI within cross sections of the downstream channel—predictions consistent with empirical measurements of thermal mixing at the confluence. The set of numerical simulations reveal that the degree of thermal mixing occurring within the confluence hydrodynamic zone varies dramatically with planform geometry and incoming flow conditions. In some cases thermal mixing at the downstream end of the confluence hydrodynamic zone is limited to the MI and its immediate vicinity, whereas in others substantial thermal mixing has occurred over most of the cross-sectional area of the flow. Overall, the simulations highlight the flow conditions and the controls of these conditions that influence mixing within the immediate vicinity of a confluence.     

Temperature,salinity and water-age variations in a tidal creek network,Bushehr Port,Iran

The spatio-temporal variability of temperature and salinity was studied for a creek network and its adjacent coastal waters along the northwestern coast of the Persian Gulf during warm and cold months. Salinity variations and tidal fluctuations were found to be out of phase throughout the creek. Temperature variations at the creek were exhibit a direct correlation with tidal fluctuations during cold months and were inversely related during warm months. The creek water was colder (warmer) than offshore water during the cold (warm) season. The salinity values observed inside this inverse estuary were higher during the warm season than the corresponding values during the cold season due to a change in evaporation rates; while the open water salinity had an opposite pattern. Using salinity as a tracer, the water-age (WA) was calculated, which shows almost linear increase from the mouth to the head. The maximum WA increases from ~10 days in winter to ~30 days in summer due to the corresponding increase in longitudinal salinity gradient. Based on the calculated non-dimensional Peclet number, the diffusion process is more rapid than the advection process in this water body, especially during the cold season.     

Use of remote sensing for the characterization of the Mediterranean coastal environment—the case ofPosidonia oceanica

The beds ofPosidonia oceanica, a marine vascular plant species endemic to the Mediterranean, form a major Mediterranean marine ecosystem. These beds are well-developed along the sandy east coast of Corsica, where the continental shelf is wide and extends for ca. 100 km. The upper limit of this ecosystem has been mapped by means of a computer image processing technique using 1/20 000 colour photographs. One of the major problems for image processing in the marine environment is the impact of the water layer (of variable thickness and quality), which can result in variations of the spectral signature for a particular vegetation or bottom type. In an attempt to reduce the impact of this artefact, a processing technique that takes into account bathymetric factors has been tested. Cartographical data obtained for an area extending from Bastia to Solenzara are presented. In the vicinity of the mouths of coastal rivers, a systematic indentation of the upper limit of the seagrass beds has been revealed. On the basis of these results, local variations in the quality of the marine environment can be detected, in particular with regard to salinity, turbidity and/or the impact of sedimentation. The overall surface area of thePosidonia oceanica beds has also been calculated.     

沉积物中汞的甲基化研究进展

汞是环境中存在的一种重要污染物质,其毒性与之化学形态密切相关。环境中的汞主要以无机汞形态存在,然而无机汞可以通过甲基化作用转化为毒性更强的甲基汞,从而给受到暴露的生物及人类带来更高的健康风险。沉积物是汞在水生环境系统中的主要分布相,也是无机汞甲基化过程发生的主要场所。沉积物中汞的甲基化过程受到生物种类、汞的生物可利用性等生物因素及温度、含硫化合物、有机质、氧化还原条件等环境理化性质的影响。本文对汞在沉积物中甲基化过程的作用机制及其影响因素的研究现状及最新进展进行了总结,并对未来更深入的研究进行了展望。     

Preliminary Measurements of Turbulence and Environmental Parameters in a Sub-Tropical Estuary of Eastern Australia

In natural systems, mixing is driven by turbulence, but current knowledge is limited in estuarine zones where predictions of contaminant dispersion are often inaccurate. A series of detailed field studies was conducted in a small sub-tropical creek in eastern Australia. Hydrodynamic, physio-chemical and ecological measurements were conducted simultaneously to assess the complexity of the estuarine zone, notably the interactions between turbulence and environment. The measurements were typically performed at high frequency over a tidal cycle. The results provide an original data set to complement long-term monitoring and a basis for a more detailed study of mixing in sub-tropical systems. Unlike many long-term observations, velocity and water quality scalars were measured herein with sufficient spatial and temporal resolutions to determine quantities of interest in the study of turbulence, while ecological indicators were sampled systematically and simultaneously. In particular the results yielded contrasted outcomes, and the finding impacts on the selection process for key water quality indicators.     

A Method for Assessing Hydrologic Alteration within Ecosystems

Hydrologic regimes play a major role in determining the biotic composition, structure, and function of aquatic, wetland, and riparian ecosystems. But human land and water uses are substantially altering hydrologic regimes around the world. Improved quantitative evaluations of human-induced hydrologic changes are needed to advance research on the biotic implications of hydrologic alteration and to support ecosystem management and restoration plans. We propose a method for assessing the degree of hydrologic alteration attributable to human influence within an ecosystem. This method, referred to as the "Indicators of Hydrologic Alteration," is based upon an analysis of hydrologic data available either from existing measurement points within an ecosystem (such as at stream gauges or wells) or model-generated data. We use 32 parameters, organized into five groups, to statistically characterize hydrologic variation within each year. These 32 parameters provide information on ecologically significant features of surface and ground water regimes influencing aquatic, wetland, and riparian ecosystems. We then assess the hydrologic perturbations associated with activities such as dam operations, flow diversion, groundwater pumping, or intensive land-use conversion by comparing measures of central tendency and dispersion for each parameter between user-defined "pre-impact" and "post-impact" time frames, generating 64 Indicators of Hydrologic Alteration. This method is intended for use with other ecosystem metrics in inventories of ecosystem integrity, in planning ecosystem management activities, and in setting and measuring progress toward conservation or restoration goals.     

苏州河底泥对上复水水质污染影响

研究了上海市苏州河底泥中有机物及营养盐释放对上复水水质的影响,分析了微生物与底栖生物底泥再悬浮对底泥释放过程的影响。研究表明,底泥中化学需氧量与水体中的化学需氧量成正比,底泥中生化需氧量与水体中的生化需氧量呈正比,再悬浮促进底泥中污染物向上复水体释放。底泥SOD与水体中DO成正比,底泥污染是影响苏州河水质的重要因素;对苏州河底泥进行疏浚工程可较好地提高水体中溶解氧的浓度、降低化学需氧量、生化需氧量及氨氮的浓度。     

The Thermal Discharges From Nuclear Power Plants in Taiwan

The increasing use of sea water for industrial cooling presents a real threat to the ecological environment in the ocean. in Taiwan where many electric power plants along the coast take sea water for cooling, people are concerned seriously about nuclear power plants. There are three nuclear power plants in Taiwan. Each plant has two units for generating power. the first two are located along the northern coast of Taiwan. the third is located in Kenting National Park along the coast of southernmost Taiwan. the plants take sea water for cooling, and discharge their heated effluents to the ocean surface from the coast. the thermal effluents have variable effects on the ecological environment near the plants. Fishermen living near the power plants complain that the heated water affects the inshore fishery catch. in addition, the thermal water from the second plant is easily accumulated near the coastal zone to influence the nearby swimming area in the summer-time. the thermal water from the third plant bleaches or kills some corals in shallow water near the outlet, and this conflicts with the interests of Kenting National Park.     

The Thermal Discharges From Nuclear Power Plants in Taiwan

The increasing use of sea water for industrial cooling presents a real threat to the ecological environment in the ocean. in Taiwan where many electric power plants along the coast take sea water for cooling, people are concerned seriously about nuclear power plants. There are three nuclear power plants in Taiwan. Each plant has two units for generating power. the first two are located along the northern coast of Taiwan. the third is located in Kenting National Park along the coast of southernmost Taiwan. the plants take sea water for cooling, and discharge their heated effluents to the ocean surface from the coast. the thermal effluents have variable effects on the ecological environment near the plants. Fishermen living near the power plants complain that the heated water affects the inshore fishery catch. in addition, the thermal water from the second plant is easily accumulated near the coastal zone to influence the nearby swimming area in the summer-time. the thermal water from the third plant bleaches or kills some corals in shallow water near the outlet, and this conflicts with the interests of Kenting National Park.     

Marsh surface sediment deposition and the role of tidal creeks: Implications for created and managed coastal marshes

The need to understand the processes contributing to marsh sedimentation has become more urgent with the recent recognition of the role of tidal marshes as sea defences, as well as the many restoration efforts currently under way. This study was designed to build upon previous sedimentation work at Scolt Head Island by Combining techniques for measuring short-term sedimentation, with detailed assessment of hydroperiod, previously used only in comparison with longer-term accretion measurements or in micro-tidal systems. Measurements of water level, sediment deposition (at various distances from the creek margin) and suspended sediment concentration (SSC) (creek margin and an interior site) were made at Hut Marsh over three sequential over-marsh tides during May 1994. Sediment trap data show a significant trend of declining sediment deposition away from the creek when data from all three tides are combined. All tides show higher SSC on the flood tide than on the ebb tide at the creek margin location. There is little difference in flood and ebb SSCs at the interior site. An order of magnitude decrease in sediment deposition within 20 m on the creek shows the rapidity with which sediment is deposited on these marshes. Higher tides influence both the magnitude and pattern of marsh surface sediment deposition. Increased creek velocities on higher tides provide more potential for resuspension within the creek and increase the supply of sediment to the marsh surface. This study suggests that the design of tidal creeks may be essential for the development of sustainable coastal marshes in restoration projects.     

Modeling the vegetation-atmosphere carbon dioxide and water vapor interactions along a controlled CO2 gradient

Ecosystem functioning is intimately linked to its physical environment by complex two-way interactions. These two-way interactions arise because vegetation both responds to the external environment and actively regulates its micro-environment. By altering stomatal aperture, and therefore the transpiration rate, plants modify soil moisture and atmospheric humidity and these same physical variables, in return, modify stomatal conductance. Relationships between biotic and abiotic components are particularly strong in closed, managed environments such as greenhouses and growth chambers, which are used extensively to investigate ecosystem responses to climatic drivers. Model-assisted designs that account for the physiological dynamics governing two-way interactions between biotic and abiotic components are absent from many ecological studies. Here, a general model of the vegetation-atmosphere system in closed environments is proposed. The model accounts for the linked carbon-water physiology, the turbulent transport processes, and the energy and radiative transfer within the vegetation. Leaf gas exchange is modeled using a carbon gain optimization approach that is coupled to leaf energy balance. The turbulent transport within the canopy is modeled in two-dimensions using first-order closure principles. The model is applied to the Lysimeter CO₂ Gradient (LYCOG) facility, wherein a continuous gradient of atmospheric CO₂ is maintained on grassland assemblages using an elongated chamber where the micro-climate is regulated by variation in air flow rates. The model is employed to investigate how species composition, climatic conditions, and the imposed air flow rate affect the CO₂ concentration gradient within the LYCOG and the canopy micro-climate. The sensitivity of the model to key physiological and climatic parameters allows it to be used not only to manage current experiments, but also to formulate novel ecological hypotheses (e.g., by modeling climatic regimes not currently employed in LYCOG) and suggest alternative experimental designs and operational strategies for such facilities.     

Temporal persistence of biological patch structure in an abyssal benthic community

An analysis of living and dead components of a population of deep-sea agglutinated Foraminifera reveals that both segments of the fauna are dispersed nonrandomly on a scale of centimeters. Significant positive correlations between the distribution of living and dead individuals in several species imply that small-scale patch structure in this environment may persist for more than one generation. Mechanisms maintaining such structure may include habitat selection and reproductive patterns and suggest that dispersion pattern is the result of an active interaction between amimals and a heterogeneous physical and biotic environment.     

Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of microbial components

The fate of soil carbon and nitrogen compounds in soils in response to climate change is currently the object of significant research. In particular, there is much interest in the development of a new generation of micro-scale models of soil ecosystems processes. Crucial to the elaboration of such models is the ability to describe the growth and metabolism of small numbers of individual microorganisms, distributed in a highly heterogeneous environment. In this context, the key objective of the research described in this article was to further develop an individual-based soil organic matter model, INDISIM-SOM, first proposed a few years ago, and to assess its performance with a broader experimental data set than previously considered. INDISIM-SOM models the dynamics and evolution of carbon and nitrogen associated with organic matter in soils. The model involves a number of state variables and parameters related to soil organic matter and microbial activity, including growth and decay of microbial biomass, temporal evolutions of easily hydrolysable N, mineral N in ammonium and nitrate, CO₂ and O₂. The present article concentrates on the biotic components of the model. Simulation results demonstrate that the model can be calibrated to provide good fit to experimental data from laboratory incubation experiments performed on three different types of Mediterranean soils. In addition, analysis of the sensitivity toward its biotic parameters shows that the model is far more sensitive to some parameters, i.e., the microbial maintenance energy and the probability of random microbial death, than to others. These results suggest that, in the future, research should focus on securing better measurements of these parameters, on environmental determinants of the switch from active to dormant states, and on the causes of random cell death in soil ecosystems.     

Using a sub-grid scale modeling approach to simulate the transport and fate of toxic air pollutants

Several air toxics are emitted from mobile sources on roadways and these emissions account for a significant fraction of the health risks to the population. In addition, health effect studies are now becoming more comprehensive and some account for the spatial heterogeneities of air pollutant concentration fields (as is the case near roadways). Standard models can simulate either the near-source concentration fields or the urban background, but no model can handle both spatial scales in the vicinity of roadways in a coherent and scientifically correct manner. Here, we present a model that provides such an integrated treatment by combining a grid-based air quality model of the urban background with a plume-in-grid representation of roadway emissions. The model is applied to simulate near-roadway concentrations due to emissions from a busy interstate highway in New York City. Qualitative comparisons with typical measured concentration profiles show that the model captures the observed features of toxic air pollutant concentrations near roadways.     

Origin and assessment of groundwater pollution and associated health risk: a case study in an industrial park,northwest China

Groundwater quality which relates closely to human health has become as important as its quantity due to the demand for safe water. In the present study, an entropy-weighted fuzzy water quality index (WQI) has been proposed for performing groundwater quality assessment in and around an industrial park, northwest China, where domestic water requirements are solely met by groundwater. The human health risk was assessed with the model recommended by the United States Environmental Protection Agency. In addition, the sources of major ions and main contaminants were also analyzed. The study shows that groundwater in the study area has been contaminated conjunctively by natural processes and industrial and agricultural activities. Nitrate, manganese (Mn), fluoride, total dissolved solids, total hardness and sulfate are major contaminants influencing groundwater quality. Nitrate and heavy metals such as Mn are mainly affected by human agricultural activities and industrial production, while other contaminants are mainly originated from mineral weathering and water–rock interactions. The results of water quality assessment suggest that half of the groundwater samples collected are of medium quality thus require pretreatment before human consumption. The mean health risk caused by the consumption of contaminated groundwater in the area is 8.42 × 10^?5 per year which surpasses the maximum acceptable level (5 × 10^?5 per year) recommended by the International Commission on Radiologic Protection. The entropy-weighted fuzzy WQI proposed in this study can not only assign proper weights to parameters but also treat uncertainties associated with water quality classification. This study will be of interest to international environmentalists and hydrogeologists. It will also be useful in regional groundwater management and protection.     

Role of probiotics on the environment of shrimp pond

Recent disease outbreak in shrimp farming caused mainly by bacteria, virus, fungi or a combination of these etiologic agents is attributed to disturbance in the environment of pond. To combat this, different antibiotics and chemicals are being used which are reported to be not environment friendly. Of late, a new and unique biotechnological product called "Probiotics " is being used widely by all the shrimp farmers worldwide, which is found to be more effective and environmentally safe also. In the present study 2 probiotics were used in a small 0.7 ha shrimp farm near Pattukottai in Tamil Nadu State for one culture period for the management of pond environment and also the gut ecology of Penaeus monodon. The environmental parameters analysed were within the acceptable limits. It was evident from the results that the production was better in the experimental pond where the probiotics were used. The biological parameters such as the average body weight, FCR and total harvest achieved were better in the experimental pond than the control pond, all due to congenial environment, which obtained in the former mainly due to the use of probiotics.     

Invasive Microstegium populations consistently outperform native range populations across diverse environments

Plant species introduced into novel ranges may become invasive due to evolutionary change, phenotypic plasticity, or other biotic or abiotic mechanisms. Evolution of introduced populations could be the result of founder effects, drift, hybridization, or adaptation to local conditions, which could enhance the invasiveness of introduced species. However, understanding whether the success of invading populations is due to genetic differences between native and introduced populations may be obscured by origin x environment interactions. That is, studies conducted under a limited set of environmental conditions may show inconsistent results if native or introduced populations are differentially adapted to specific conditions. We tested for genetic differences between native and introduced populations, and for origin x environment interactions, between native (China) and introduced (U.S.) populations of the invasive annual grass Microstegium vimineum (stiltgrass) across 22 common gardens spanning a wide range of habitats and environmental conditions. On average, introduced populations produced 46% greater biomass and had 7.4% greater survival, and outperformed native range populations in every common garden. However, we found no evidence that introduced Microstegium exhibited greater phenotypic plasticity than native populations. Biomass of Microstegium was positively correlated with light and resident community richness and biomass across the common gardens. However, these relationships were equivalent for native and introduced populations, suggesting that the greater mean performance of introduced populations is not due to unequal responses to specific environmental parameters. Our data on performance of invasive and native populations suggest that post-introduction evolutionary changes may have enhanced the invasive potential of this species. Further, the ability of Microstegium to survive and grow across the wide variety of environmental conditions demonstrates that few habitats are immune to invasion.     

畜禽养殖排放的雌激素对周边水体环境的影响

环境雌激素是一大类化学物质,它们能够干扰生物体内激素的合成、分泌、转运、活性等,或与生物体内激素结构相似而发挥激素作用,对生物体的生长、繁殖及行为产生不利影响。环境雌激素包括天然雌激素及人工合成类雌激素。随着国内畜禽养殖的规模与数量的不断扩大,养殖场成为了一个很大的环境雌激素的产生源,其环境风险应得到相应的重视。目前对畜禽养殖过程中环境雌激素的产生量以及雌激素进入环境后的迁移转化行为已有很多的研究,包括野外的调查与实验室内机理研究。畜禽养殖过程产生的大量雌激素进入环境后能够被土壤吸附及微生物降解。室内的静态平衡吸附实验、土柱迁移试验及降解研究均表明雌激素进入环境后绝大部分迅速被吸附到土壤颗粒或悬浮胶体、沉积物颗粒上,同时发生转化与生物降解,由此推断其对周边环境中的雌激素贡献很小。然而,野外调查结果却表明实际情况下雌激素的迁移性高于理论期望值。因此,畜禽养殖对周边环境中雌激素的贡献量的大小尚未明确。本论文综述了畜禽养殖过程中环境雌激素的排放情况,结合国内外的调查研究,阐述了畜禽养殖产生的环境雌激素在土壤及水体中的迁移与降解行为,探讨了影响准确评估畜禽养殖排泄物对周边水体中雌激素贡献大小的因子,并提出了今后应开展原位吸附与迁移的实验,重点考虑天然有机质及抗生素等共存物质对雌激素环境行为的影响,建立综合模型来估算不同时期养殖场对周围水环境雌激素的贡献量的建议。