A two-dimensional inviscid model of the gravity-current head by Lagrangian block simulation

A two-dimensional inviscid model of the gravity-current head produced by the release of a relatively small volume of dense fluid from behind a tall lock gate is constructed by Lagrangian block simulation. Three numerical experiments are conducted for the lock’s height-to-length aspect ratios H/L _o  = 8, 4 and 2. The front speeds obtained by the simulations agree with the laboratory observation for a similar range of aspect ratios. The floor velocity in the wake behind these heads is found to be greater than their front speed. The high floor velocity is caused by the impingement of the coherent wake vortex on the floor. It is a condition that permits these gravity-current heads to maintain their structural integrity so that the fine sediments can travel with the head over long distances on the ocean floor. The structural coherence of the current head depends on the lock aspect ratio. The gravity-current head produced by the release from the lock with the highest aspect ratio of H/L _o  = 8 is most coherent and relatively has the greatest floor velocity and the least trailing current behind the head.     

Impact of logging activities in a tropical mangrove on ecosystem diversity and sediment heavy metal concentrations

Productivity of mangrove ecosystems is compromised by anthropogenic activities including over-exploitation of wood. This study set out to understand how different wood harvesting regimes have affected the biodiversity of a tropical ecosystem and to identify relationships between the heavy metal concentrations in the mangrove sediments and tree felling. Soil samples were collected and plant diversity studies carried out on seven sites in the mangrove. Physico-chemical, chemical and mineralogical analyses were done on soil samples and plant population structure, species richness, evenness and diversity index at these sites were calculated. Results showed that soils across sites were characteristically clayey and acidic, with high organic matter content. Minerals identified included quartz, gibbsite, goethite, hematite and kaolinite. Heavy metal concentrations were higher in Sites 6 and 7 with a longer history of anthropogenic activity. There were strong negative correlations between the duration of logging and NO₃-N (r = ?0.838, p = 0.019), total N (r = ?0.837, p = 0.019), NH₄ ⁺-N (r = ?0.844, p = 0.017), Mg = (?0.789, p = 0.035), K (r = ?0.819, p = 0.024), and Na (r = ?0.988, p = 0.002). Sites which had experienced logging for longer periods (sites 3, 6, and 7) had lower nutrient content and lower values for species richness and diversity index. Logging in mangrove ecosystems could alter soil characteristics, decreasing plant diversity and abundance. Logging dynamics around mangrove ecosystems should be considered in the wider strategy for management and conservation of similar mangrove ecosystems.     

Population structure of two northern hemisphere polychaetes,<Emphasis Type="Italic"> Neanthes virens</Emphasis> and<Emphasis Type="Italic"> Hediste diversicolor</Emphasis> (Nereididae), with different life-history traits

The present study compared population genetic structure of two northern hemisphere polychaetes, Neanthes virens (Sars, 1835) and Hediste diversicolor (O.F. Müller, 1776), with different life-history traits. N. virens has a pelagic larval phase that may last as long as 9 days, while H. diversicolor broods its offspring. It was predicted that N. virens populations, especially over relatively short geographic distances, would be more genetically similar than H. diversicolor populations. Sequence data were obtained for two mitochondrial genes, cytochrome c oxidase I (COI) and cytochrome b (cyt b). The COI gene showed no variation in 16 N. virens individuals from 12 locations, and it was not examined in H. diversicolor. The nucleotide sequence of the cyt b gene was examined in 93 N. virens individuals collected in 1992, 1999, and 2000 from 12 localities throughout its range (North America, Europe, Japan) and from 33 H. diversicolor individuals collected in 1999 and 2001 from one locality in eastern Canada and two localities in France (Roscoff and Marseille). In N. virens, one cyt b haplotype was shared by 89% (83 out of 93) and only two other haplotypes were found. Significant population structure was observed in H. diversicolor. In the 33 sequences compared, 18.9% of sites were polymorphic and 12 haplotypes were identified. There were two haplotypes in the Canadian population, three in the Marseille samples, and seven in the Roscoff samples, and no haplotype was found in common between any two sites. These results show that widely separated H. diversicolor populations are strongly differentiated at the cyt b locus. The most plausible interpretation for the low variation at the COI and cyt b loci in N. virens, and for the lack of variation at allozyme loci (based on an initial survey of a smaller subset of populations), is that this species has experienced a drastic bottleneck and that a few remaining lineages recolonized its entire range.     

Kinetic and mechanism studies of the adsorption of lead onto waste cow bone powder (WCBP) surfaces

This study examines the adsorption isotherms, kinetics and mechanisms of Pb²⁺ sorption onto waste cow bone powder (WCBP) surfaces. The concentrations of Pb²⁺ in the study range from 10 to 90 mg/L. Although the sorption data follow the Langmuir and Freundlich isotherm, a detailed examination reveals that surface sorption or complexation and co-precipitation are the most important mechanisms, along with possibly ion exchange and solid diffusion also contributing to the overall sorption process. The co-precipitation of Pb²⁺ with the calcium hydroxyapatite (Ca-HAP) is implied by significant changes in Ca²⁺ and PO₄ ^3? concentrations during the metal sorption processes. The Pb²⁺ sorption onto the WCBP surface by metal complexation with surface functional groups such as ≡ POH. The major metal surface species are likely to be ≡ POPb⁺. The sorption isotherm results indicated that Pb²⁺ sorption onto the Langmuir and Freundlich constant q _max and K _F is 9.52 and 8.18 mg g^?1, respectively. Sorption kinetics results indicated that Pb²⁺ sorption onto WCBP was pseudo-second-order rate constants K ₂ was 1.12 g mg^?1 h^?1. The main mechanism is adsorption or surface complexation (≡POPb⁺: 61.6%), co-precipitation or ion exchange [Ca_3.93 Pb_1.07 (PO₄)₃ (OH): 21.4%] and other precipitation [Pb 50 mg L^?1 and natural pH: 17%). Sorption isotherms showed that WCBP has a much higher Pb²⁺ removal rate in an aqueous solution; the greater capability of WCBP to remove aqueous Pb²⁺ indicates its potential as another promising way to remediate Pb²⁺-contaminated media.     

Seasonal changes in biomass,growth rates and production of subantarctic calanoid copepods in the Bay of Morbihan,Kerguelen Islands

The present study addresses the ecology of two dominant copepod species in the Bay of Morbihan, Kerguelen Archipelago. The biomass of the herbivore Drepanopus pectinatus (from 2 mg m^?3 in winter up to 500 mg m^?3 in summer) is tightly coupled to seasonal changes in chlorophyll a concentration in the region, whereas the biomass of the predatory euchaetiid Paraeuchaeta antarctica increases during two distinct periods over the year: 250 mg m^?3 in early summer, with the recruitment of the annual generation, and 100 mg m^?3 in autumn, with the deposition of lipids as energy reserves in C5 stages and adults. The juvenile growth rates predicted by temperature-dependent models (0.09 day^?1) closely approximate those observed in D. pectinatusin summer, but are much greater than those observed in P. antarctica (from 0.001 to 0.04 day^?1 depending on developmental stages). This difference can be explained by the reproductive strategies and trophic positions of the two species and may also result from the dependence of larval growth on energy reserves in P. antarctica. The production rates are five- and tenfold greater in juvenile stages than in adults, respectively, for D. pectinatus and P. antarctica. The secondary production by D. pectinatusis insufficient to support P. antarcticaduring winter, when the predatory species probably shifts to alternate prey. In summer the predation by P. antarctica accounts for only a minor part of the mortality estimated for D. pectinatus (from 20% to 60% depending on the examined station). At two of the three stations examined in the Bay of Morbihan, the production of P. antarctica could potentially support the dietary requirements of planktivorous seabirds in the region (~2,000 kg prey day^?1 for common diving petrels, Pelecanoides urinatrix, and ~90 kg prey day^?1 for rockhopper penguins, Eudyptes chysocome filholi).     

Respiration and lipid content of the Arctic copepod<Emphasis Type="Italic"> Calanus hyperboreus</Emphasis> overwintering 1 m above the seafloor at 2,300 m water depth in the Fram Strait

In August 2000 high concentrations of the dominant herbivorous copepod Calanus hyperboreus were detected in the Arctic Fram Strait, west of Spitsbergen, 1 m above the seafloor at 2,290 m water depth. Individuals from that layer were sampled by a hyper-benthic net attached to the frame of an epi-benthic sledge. For comparison, the vertical distribution of C. hyperboreus in the water column was studied simultaneously by a multiple opening/closing net haul from 2,250 m depth to the surface. Maximum abundance was found close to the surface with 6.6 and 10.0 ind. m^?3 at 0–50 m and 50–100 m depth, respectively. However, the major fraction of the population (>40%) occurred between 1,000 and 1,500 m depth. In the deepest layer (2,000–2,250 m) abundance measured 2.2 ind. m^?3 and was twice as high as between 100 and 1,000 m depth. In comparison to individuals from surface waters, copepods from the hyper-benthic layer were torpid and did not react to mechanical stimuli. Stage CV copepodids and females from the deep sample contained 4–10% less lipid and showed significantly reduced respiration rates of 0.24 and 0.26 ml O₂ h^?1 g^?1 dry mass (DM) as compared to surface samples (0.49 and 0.43 ml O₂ h^?1 g^?1 DM). All these observations indicate that the hyper-benthic part of the population had already started a dormant overwintering phase at great depth. Based on the lipid deposits and energy demands, the potential maximum duration of the non-feeding dormant phase was estimated at 76–110 days for females and at 98–137 days for CV copepodids, depending on what indispensable minimum lipid content was assumed. In any case, the estimated times could not meet the necessary requirements for a starvation period of >6 months until the next phytoplankton bloom in the following spring. The ecological implications of these results are discussed with respect to the life cycle and eco-physiological adaptations of C. hyperboreus to its high-Arctic habitat.     

Characteristics of residual organochlorine pesticides in soils under different land-use types on a coastal plain of the Yellow River Delta

The residual levels of organochlorine pesticides (OCPs) were examined in soils covering five types of land use along a salinity gradient on the Yellow River Delta. The most prominent OCPs were dichlorodiphenyltrichloroethane (∑DDT, arithmetic mean = 5.11 μg kg^?1), hexachlorocyclohexane (∑HCH, 1.69 μg kg^?1) and ∑endosulfan (10.4 μg kg^?1). The spatial variability of OCPs composition shifted from γ-HCH and o,p′-DDT dominated pesticides in coastal soils to p,p′-DDE dominated pesticides in inland soils. In different land-use types, the percentages of β-HCH and p,p′-DDE are characterized by more recalcitrant components in decreasing order of vegetable fields, cereal fields, cotton fields, wetlands and tidal flats with increasing soil salinity. However, the less recalcitrant components, γ-HCH and o,p′-DDT, showed an opposite trend. Endosulfan sulfate predominated in all land-use types. Residual levels of β-HCH were affected by soil organic matter. The correlations between γ-HCH and clay content and between p,p′-DDE, o,p′-DDT and salinity might associate with the influence of sediment cotransport by the Yellow River and the density of anthropogenic activities in coastal region. Depth distribution of the OCPs in typical soil profiles also implied that local historical usage and sediment transport by the Yellow River both affected the OCPs residual in this region.     

Diffusional mass transfer coefficient at the water–sediment interface for wind-induced flow in very shallow lagoons

Very shallow lagoons that are a few centimeters deep are common in the arid Andes of Northern Chile, Argentina, Bolivia and Perú. The dynamics of these lagoons are dominated by the water–sediment interface (WSI) and strong afternoon winds. Although many studies have examined the diffusional mass transfer coefficients (k _t ) of open channel flows, estimates for wind-induced flows are still unknown. The aim of this article is to propose and validate an analytical expression for computing k _t at the WSI for wind-induced flow. The laboratory measurements were conducted in a wind tunnel with a water tank of variable depth located at its downwind end. Natural muddy sediments were placed in the middle of the tank so that the dissolved oxygen (DO) was consumed in the sediments. The diffusional mass transfer coefficient that characterizes the DO uptake in the sediment was obtained from DO micro-profiles measured with an OX-25 Unisense microelectrode. Water velocity profiles were measured with a 2D side-view Sontek acoustic doppler velocimetry (ADV), and the wind shear velocity was computed based on wind velocity profiles that were measured with an Extech hot-wire anemometer. A total of 16 experiments were conducted with different water depths and wind shear stresses. The constants required by the model were determined from these experiments, and the analytical expression was successfully validated by the laboratory observations. The analytical expression obtained for computing k _t was also validated with field observations that were conducted in October, 2012, in Salar del Huasco, Northern Chile (20.274° S, 68.883° W, 3800 m above sea level). The comparison between the observed and predicted values of k _t provides a determination coefficient of r ² = 0.48 and a p value < 0.01. The results show that the value of k _t for wind-induced flow is proportional to the wind shear velocity and the inverse of the Reynolds number of the wind-induced current.     

Environmental modeling of uranium interstitial compositions of non-stoichiometric oxides: experimental and theoretical analysis

Study of uranium interstitial compositions of non-stoichiometric oxides UO_2+x (x ∈ 0.1–0.02) in gas and condense phases has been presented, using various soft-ionization mass spectrometric methods such as ESI-, APCI-, and MALDI-MS at a wide dynamic temperature gradient (∈ 25–300 °C). Linearly polarized vibrational spectroscopy has been utilized in order to assign unambiguously, the vibrational frequencies of uranium non-stoichiometric oxides. Experimental design has involved xUO_2.66·yUO_2.33, xUO_2.66·yUO_2.33/SiO₂, xUO_2.66·yUO_2.33/SiO₂ (NaOH) and SiO₂/x′NaOH·y′UO₂(NO₃)₂·6H₂O, multicomponent systems (x = 1, y ∈ 0.1–1.0 and x′ = 1, y′ ∈ 0.1–0.6) as well as phase transitions UO₂(NO₃)₂·6H₂O → {U₄O₉(UO_2.25)} → U₃O₇(UO_2.33) → U₃O₈(UO_2.66) → {UO₃}, thus ensuring a maximal representativeness to real environmental conditions, where diverse chemical, geochemical and biochemical reactions, including complexation and sorption onto minerals have occurred. Experimental factors such as UV-irradiation, pH, temperature, concentration levels, solvent types and ion strength have been taken into consideration, too. As far as uranium speciation represents a challenging analytical task in terms of chemical identification diverse coordination species, mechanistic aspects relating incorporation of oxygen into UO _2+x form the shown full methods validation significantly impacts the field of environmental radioanalytical chemistry. UO₂ is the most commonly used fuel in nuclear reactors around the globe; however, a large non-stoichiometric range ∈ UO_1.65–UO_2.25 has occurred due to radiolysis of water on UO₂ surface yielding to H₂O₂, OH^·, and more. Each of those compositions has different oxygen diffusion. And in this respect enormous effort has been concentrated to study the potential impact of hazardous radionuclide on the environment, encompassing from the reprocessing to the disposal stages of the fuel waste, including the waste itself, the processes in the waste containers, the clay around the containers, and geological processes. In a broader sense, thereby, this study contributes to field of environmental analysis highlighting the great ability of various soft-ionization MS methods, particularly, MALDI-MS one, for direct assay of complex multicomponent heterogeneous mixtures at fmol–attomol concentration ranges, along with it the great instrumental features allowing, not only meaningful quantitative, but also structural information of the analytes, thus making the method indispensable for environmental speciation of radionuclides, generally.     

Designing environmental monitoring networks to measure extremes

This paper discusses challenges arising in the design of networks for monitoring extreme values over the domain of a random environmental space-time field {X _ij } i = 1, . . . , I denoting site and j = 1, . . . denoting time (e.g. hour). The field of extremes for time span r over site domain i = 1, . . . ,I is given by \(\{Y_{i(r+1)}=\max_{j=k}^{k+n-1} X_{ij}\}\) for k = 1 + rn, r = 0, . . . ,. Such networks must not only measure extremes at the monitored sites but also enable their prediction at the non-monitored ones. Designing such a network poses special challenges that do not seem to have been generally recognized. One of these problems is the loss of spatial dependence between site responses in going from the environmental process to the field of extremes it generates. In particular we show empirically that the intersite covariance Cov(Y _i(r+1),Y _i′(r+1)) can generally decline toward zero as r increases, for site pairs i ≠ i′. Thus the measured extreme values may not predict the unmeasured ones very precisely. Consequently high levels of pollution exposure of a sensitive group (e.g. school children) located between monitored sites may be overlooked. This potential deficiency raises concerns about the adequacy of air pollution monitoring networks whose primary role is the detection of noncompliance with air quality standards based on extremes designed to protect human health. The need to monitor for noncompliance and thereby protect human health, points to other issues. How well do networks designed to monitor the field monitor their fields of extremes? What criterion should be used to select prospective monitoring sites when setting up or adding to a network? As the paper demonstrates by assessing an existing network, the answer to the first question is not well, at least in the case considered. To the second, the paper suggests a variety of plausible answers but shows through a simulation study, that they can lead to different optimum designs. The paper offers an approach that circumvents the dilemma posed by the answer to the second question. That approach models the field of extremes (suitably transformed) by a multivariate Gaussian-Inverse Wishart hierarchical Bayesian distribution. The adequacy of this model is empirically assessed in an application by finding the relative coverage frequency of the predictive credibility ellipsoid implied by its posterior distribution. The favorable results obtained suggest this posterior adequately describes that (transformed) field. Hence it can form the basis for designing an appropriate network. Its use is demonstrated by a hypothetical extension of an existing monitoring network. That foundation in turn enables a network to be designed of sufficient density (relative to cost) to serve its regulatory purpose.     

Differences in the species- and size-composition of fish assemblages in three distinct seagrass habitats with differing plant and meadow structure

Fish faunas were sampled seasonally using a large and a small beam trawl in three seagrass habitats comprising predominantly Amphibolis griffithii or Posidonia sinuosa or Posidonia coriacea, which differ in seagrass and meadow structure. Amphibolis griffithii and P. sinuosa both produce a relatively dense leaf canopy, but the former exhibits a distinct architecture, with the leaf canopy overlying relatively open spaces surrounding woody stems, compared to the uniformly dense blade-like leaves of P. sinuosa which emerge directly from the sediment. In comparison, P. coriacea provides a landscape of patchy seagrass amongst areas of bare sand. Since the latter seagrass habitat contains large areas of sand, fish were also sampled in adjacent unvegetated areas. The number of species and density of fish were greater (P<0.05) in P. sinuosa than in either A. griffithii or P. coriacea. The mean number of species caught using the large trawl ranged from 16 to 24 in the first of these habitats compared to 14–21 and 9–15 in the last two habitats, respectively, and the mean densities ranged between 78 and 291 fish 1000 m^?2 in P. sinuosa compared to 31–59 fish 1000 m^?2 in A. griffithii and 31–59 fish 1000 m^?2 in P. coriacea. The biomass of fish was greater (P<0.05) in both P. sinuosa and A. griffithii than in P. coriacea (4.2–5.3 kg and 3.3–6.2 kg versus 0.7–1.9 kg 1000 m^?2, respectively). Furthermore, the size-structure of fish differed among these habitats, where the median weight of fish was 72.1 g in A. griffithii, compared to 7.5 g and 19.8 g in P. sinuosa and P. coriacea, respectively. Ordination and ANOSIM demonstrated that the species-composition differed markedly among the three seagrass habitats (P<0.001), suggesting that fish species display a distinct preference for particular seagrasses characterised by different architecture. Differences in species-composition among the seagrass habitats partly reflected the size-composition of fish in each habitat. The open space below the canopy of A. griffthii is likely to allow larger fish to occupy this habitat, whereas only small fish would be able to penetrate the dense foliage of P. sinuosa. Differences in species- and size-composition of fish among these habitats may be the result of settlement-sized larvae discriminating between particular seagrass and meadow structures, or fish being subject to different levels of predation and/or accessibility to food or space. The species-composition in P. coriacea was highly dispersed and did not differ from that of unvegetated areas. While several species were associated with both P. coriacea and bare-sand habitats, some species did display a high affinity with the seagrass P. coriacea. This may reflect an association with the sparse and narrower leaves of this seagrass or with the patchy occurrence of the seagrass Heterozostera tasmanica, which commonly occurs as an understorey in this habitat.     

HCHs and DDTs in Yellow River of Henan section—a typical agricultural area in China: levels,distributions and risks

The levels, potential sources and ecological risks of hexachlorocyclohexanes (HCHs) and dichlorodiphenyltrichloroethanes (DDTs) in Yellow River of Henan section, a typical agricultural area in China, were investigated. Surface water samples and suspended particulate matters (SPMs) were collected from 23 sites during two seasons. In wet season, the residues of ∑HCHs (α-HCH, β-HCH, γ-HCH and δ-HCH) and ∑DDTs (p,p′-DDT, o,p′-DDT, p,p′-DDE, p,p′-DDD) ranged from 41.7 to 290 and 4.42 to 269 ng/L in surface water, while those varied from 0.86 to 157 and 1.79 to 96.1 ng/g dw in SPM, respectively. Moreover, in surface water, the levels of HCHs and DDTs in wet season were much higher than those in dry season. The reverse was true for residues of HCHs and DDTs in SPM. Compared with the large rivers in other regions, the levels of HCHs and DDTs in the studied area ranked at high levels and the residual concentrations might cause adverse biological risk, especially for ∑HCHs during wet season. Distributions of HCHs and DDTs delineated that the input of tributaries made a significant effect on the residue of HCHs and DDTs in the mainstream. ∑HCHs in surface water were consist of 26.7 % α-HCH, 30.0 % β-HCH, 37.9 % γ-HCH and 5.45 % δ-HCH and those in SPM contained 5.16 % α-HCH, 22.1 % β-HCH, 60.5 % γ-HCH and 12.2 % δ-HCH on average. Combined with ratios of α-HCH/γ-HCH in surface water (0.70) and in SPM (0.09), the results strongly indicated that lindane was recently used or discharged in the studied area. The mean percentage of DDTs′ isomers were 28.7 % p,p′-DDT, 29.8 % o,p′-DDT, 28.1 % p,p′-DDE and 13.4 % p,p′-DDD in surface water, while those were 12.5 % p,p′-DDT, 31.8 % o,p′-DDT, 30.5 % p,p′-DDE and 25.1 % p,p′-DDD in SPM. The ratios of (DDE + DDD)/∑DDTs and o,p′-DDT/p,p′-DDT revealed that the DDTs in the studied area mainly derived from long-term weathering of technical DDTs residue and the input of dicofol.     

Development of similarity relationships for energy dissipation rate and temperature structure parameter in stably stratified flows: a direct numerical simulation approach

In this study, a newly developed direct numerical simulation (DNS) solver is utilized for the simulations of numerous stably stratified open-channel flows with bulk Reynolds number (Re _b ) spanning 3400–16,900. Overall, the simulated bulk Richardson number (\(Ri_b\)) ranges from 0.08 (weakly stable) to 0.49 (very stable). Thus, both continuously turbulent and (globally) intermittently turbulent cases are represented in the DNS database. Using this comprehensive database, various flux-based and gradient-based similarity relationships for energy dissipation rate (ε) and temperature structure parameter (\(C_T^2\)) are developed. Interestingly, these relationships exhibit only minor dependency on Re _b . In order to further probe into this Re _b -effect, similarity relationships are also estimated from a large-eddy simulation (LES) run of an idealized atmospheric boundary layer (very high Re _b ) case study. Despite the fundamental differences in the estimation of ε and \(C_T^2\) from the DNS- and the LES-generated data, the resulting similarity relationships, especially the gradient-based ones, from these numerical approaches are found to be remarkably similar. More importantly, these simulated relationships are also comparable, at least qualitatively, to the traditional observational data-based ones. Since these simulated similarity relationships do not require Taylor’s hypothesis and do not suffer from mesoscale disturbances and/or measurement noise, they have the potential to complement the existing similarity relationships.     

Simple model of sludge thickening process in secondary settlers

In wastewater treatment plants (WWTPs), a secondary settler acts as a clarifier, sludge thickener, and sludge storage tank during peak flows and therefore plays an important role in the performance of the activated sludge process. Sludge thickening occurs in the lower portions of secondary clarifiers during their operation. In this study, by detecting the hindered zone from the complete thickening process of activated sludge, a simple model for the sludge thickening velocity, u _s = aX ^b (a = 0.9925SSVI _3.5, b = 3.541ln(SSVI _3.5)+12.973), describing the potential and performance of activated sludge thickening in the hindered zone was developed. However, sludge thickening in the compression zone was not studied because sludge in the compression zone showed limited thickening. This empirical model was developed using batch settling data obtained from four WWTPs and validated using measured data from a fifth WWTP to better study sludge thickening. To explore different sludge settling and thickening mechanisms, the curves of sludge thickening and sludge settling were compared. Finally, it was found that several factors including temperature, stirring, initial depth, and polymer conditioning can lead to highly concentrated return sludge and biomass in a biologic reactor.     

Purification and sequencing of a mate-recognition protein from the copepod<Emphasis Type="Italic"> Tigriopus japonicus</Emphasis>

Male copepods in the genus Tigriopus use surface proteins of female copepods to recognize appropriate mates. In a previous study of pre-copulatory mate-guarding in T. japonicus Mori, a monoclonal antibody was developed against one protein that contributed to the attractiveness of female T. japonicus as mate-guarding partners. In the present study, which was performed between December 1998 and November 2000, the antibody was used to purify two proteins from homogenates of pooled T. japonicus. A 70 kD protein was partially sequenced using mass spectrometry, revealing sequence similarity to α₂-macroglobulin. It was shown that the 70 kD protein was highly expressed in stage CV females, the most attractive stage for mate-guarding. A purified 36 kD protein was also shown to be a cognate of α₂-macroglobulin. Because the structure of both the 70 and 36 kD proteins suggested that protease activity and its inhibition might play a role in male mate choice, three protease inhibitors were tested in bioassays of male discrimination of conspecifics. The male's ability to discriminate among females was not completely blocked by the protease inhibitor, but their behavior was affected in more subtle ways. This suggests that the 70 kD protein, designated CSP70, is a variant of α₂-macroglobulin, but with more specific activity.     

Growth and production of<Emphasis Type="Italic"> Ophiocten gracilis</Emphasis> (Ophiuroidea: Echinodermata) on the Scottish continental slope

Growth and production of the bathyal ophiurid brittle star Ophiocten gracilis was studied from skeletal growth bands and disc size frequencies of specimens collected in sled and trawl samples taken on the continental slope off Scotland. Growth bands showed up in SEM examination as ring-like zones in surface relief and texture of the stereom microstructure of the intervertebral muscle insertions on the arm ossicles. Seasonal variability in somatic growth, presumed to underlie this growth pattern, may reflect reproduction and/or a possible non-feeding period during gonad maturation. Disc size-at-age was back-calculated from size-at-age interpreted from growth-band series on the vertebral ossicles from arms of O. gracilis. Pooled growth-band frequency data and normal-distribution mixtures based on size-at-age data were used to test for overgrowth of early growth bands on the ossicles from larger individuals. Von Bertalanffy and Gompertz growth models were fitted to the finalised back-calculated disc size-at-age data. These were used along with the modal structure of the observed disc size frequencies to develop a demographic model based on normal-distribution mixtures constrained by the growth model. These and other defining parameters were fitted by non-linear regression to size structure observed in a sample of the breeding population from 997 m depth on the Hebrides Terrace. Recruitment was estimated according to available data from sediment-trap time series. A ratio of somatic production/biomass, P_S/B, in the range of 0.43–0.54 was estimated using a fitted size/mass relationship and the increment summation method (ISM) applied to the fitted growth models. A narrower, but otherwise similar, range in estimated P_S/B ratios (0.48–0.49) was obtained in a parallel approach using the mass-specific growth rate method (MSGRM), whereby the same size/mass relationship was applied to the observed frequencies and growth parameters fitted to growth banding. Using previously obtained data on population density, a standing crop of 4.8 g wet weight (~0.58 mg AFDW) m^?2 would provide annual wet weight production in the range of 1.9–2.4 g (~0.23–0.29 mg AFDW) m^?2 in the population between ca. 700–1000 m depth. Somewhat greater production estimates (P_S/B=0.73–0.98) were obtained from MSGRM by pooling the sample with size frequencies from other large samples in which postlarval sizes were more numerous, but larger sizes less numerous. Similarly high production was estimated by MSGRM from a box corer sample from the Wyville-Thomson Ridge. Explanations for variability in size structure are discussed, but even the lower estimates are comparable to boreal shallow-water brittle stars. The high rate of growth and production by accepted deep-sea standards may be related to a capability for interface feeding.     

Study of flow formed by three coplanar impinging pipe jets at inclination angles of 30° and 45°

This paper presents an experimental study of the interactions of three fully-submerged, coplanar impinging jets issued from long pipes. The jets were neutrally buoyant and were arranged symmetrically about the axis of a central jet, with two side jets set to intersect with the central jet at two inclination angles (30° and 45°) and three Reynolds numbers (4240, 6400 and 8000). Measurements of the flow fields were performed using particle image velocimetry to examine the flow structures in various planes, i.e., the jet axis plane (X–Y), the jet normal plane (X–Z) and the cross-sectional plane (Y–Z). This flow configuration results in pronounced interactions among the three jets, and hence better mixing than that of a canonical single pipe jet as illustrated by augmented centreline velocity decay, spreading rate and turbulence level. The jets at the inclination angle of 45° impinge and mix more rapidly than those at 30°. For each case, the flow is highly 3-dimensional, and jet development displayed several distinct regions (converging, merging and combining) along the streamwise direction. The expansion of flow in the X–Y plane is similar to the shape of a hyperbola with necking formed immediately downstream of the impinging point, whereas that in the X–Z plane assumes the shape of a parabola with an open rim exhibiting a pronounced velocity deficit in the central part of the combining flow. Self-similarity of streamwise mean velocity is explored in the combining region of the flow on the two planes of symmetry (X–Y and X–Z). Flow development in the combining region is dominated by large-scale vortical structures, including von Kárman-like spanwise vortices in the X–Y plane and secondary circulation in the form of two pairs of counter-rotating streamwise vortices in the Y–Z plane.     

Genetic structure of<Emphasis Type="Italic"> Linckia laevigata</Emphasis> and<Emphasis Type="Italic"> Tridacna crocea</Emphasis> populations in the Palawan shelf and shoal reefs

Allozyme variation of 10 populations of Linckia laevigata at 8 polymorphic loci and 13 populations of Tridacna crocea at 6 polymorphic loci were analyzed to compare genetic variability and genetic affinities among reefs in Palawan, Philippines. Two to five populations were sampled from each of four regions: the shelf reefs in (1) northern Palawan and (2) southern Palawan and the offshore reefs in (3) the Kalayaan island group (KIG) in the South China Sea and (4) the Tubbataha shoals in the Sulu Sea. Heterozygosity was highest in populations of L. laevigata from the south shelf of Palawan and populations of T. crocea from the Tubbataha shoals of the Sulu Sea. The lowest heterozygosity estimates were from the reefs of the KIG in the South China Sea, for both species. Overall F _ST values for both species were significant, with an estimated average number of effective migrants per generation (N _EM) of 4.85 (~5 individuals) for L. laevigata and 3.54 (~4 individuals) for T. crocea. Within-region comparisons showed N_EM ranging from 6.29 to 92.34 for L. laevigata and from 3.40 to 6.30 for T. crocea. The higher gene flow among L. laevigata populations relative to T. crocea is consistent with the greater dispersal potential of the former species. Finer scale genetic structuring was evident in T. crocea populations. For both species, the Tubbataha reefs in the Sulu Sea have higher genetic affinity with the populations from the southern shelf of Palawan, while the reefs in the KIG had higher affinity with the northern Palawan shelf reefs. The north and south shelf populations have the least genetic affinity. Genetic patchiness among reefs within regions suggests the importance of small-scale physical factors that affect recruitment success in structuring populations in small island and shoal reef systems in Palawan.     

Temporal analysis of population genetic composition in the overexploited Japanese eel <Emphasis Type="Italic">Anguilla japonica</Emphasis>

The Japanese eel has dramatically declined in Asia since the 1970s. Over the past two decades, glass eel productivity in Taiwan has decreased, but is highly variable among each year catch, though the cause for this is unknown. The impact of both population decline and instability on genetic diversity, however, is unknown. In this study, we investigated changes in allele frequencies of Japanese eel recruitment events over the past 20 years using six polymorphic microsatellite DNA loci. Specimens of glass eels were collected yearly from a single location in northern Taiwan from 1986 to 2007. Overall genetic differentiation among all samples was very low but significant (F_ST = 0.002, P = 0.002), and only 2 out of 120 pairwise tests were significant. The relationship between genetic and temporal distance showed a slight but insignificant correlation (R² = 0.03, P = 0.0504). There were no overall significant differences in allelic richness (P = 0.35) or genetic heterozygosity (P = 0.73) among annual recruitment events. No apparent loss of genetic diversity and occurrence of a genetic bottleneck for eel populations were observed. Estimates of the effective population size (N_e) generally exceeded 500, although confidence intervals were very wide. While El Niño /Southern Oscillation (ENSO) events had little impact on genetic diversity, they may account for the annual fluctuation in glass eel catch. These results indicate long-term stability of genetic diversity in the Japanese eel with little evidence for sweepstakes recruitment.     

The decline and recovery of four predatory fishes from the Southern California Bight

What to do about fisheries collapse and the decline of large fishes in marine ecosystems is a critical debate on a global scale. To address one aspect of this debate, a major fisheries management action, the removal of gill nets in 1994 from the nearshore arena in the Southern California Bight (34°26′30″N, 120°27′09″W to 33°32′03″N, 117°07′28″W) was analyzed. First, the impetus for the gill net ban was the crash of the commercial fishery for white seabass (Atractoscion nobilis; Sciaenidae) in the early 1980s. From 1982 to 1997 catch remained at a historically low level (47.8 ± 3.0 mt) when compared to landings from 1936–1981, but increased significantly from 1995–2004 (r = 0.89, P < 0.01) to within the 95% confidence limit of the historic California landings. After the white seabass fishery crashed in the early 1980s, landings of soupfin (Galeorhinus galeus; Triakidae) and leopard shark (Triakis semifasciata; Triakidae) also significantly declined (r = 0.95, P < 0.01 and r = 0.91, P < 0.01, respectively) until the gill net closure. After the closure both soupfin and leopard shark significantly increased in CPUE (r = 0.72, P = 0.02 and r = 0.87, P < 0.01, respectively). Finally, giant sea bass (Stereolepis gigas; Polyprionidae) the apex predatory fish in this ecosystem, which was protected from commercial and recreational fishing in 1981, were not observed in a quarterly scientific SCUBA monitoring program from 1974 to 2001 but reappeared in 2002–2004. In addition, CPUE of giant seabass increased significantly from 1995 to 2004 (r = 0.82, P < 0.01) in the gill net monitoring program. The trends in abundance of these fishes return were not correlated with sea surface temperature (SST), the Pacific Decadal Oscillation (PDO) or the El Niño/Southern Oscillation (ENSO). All four species increased significantly in either commercial catch, CPUE, or in the SCUBA monitoring program after the 1994 gill net closure, whereas they had declined significantly, crashed, or were absent prior to this action. This suggests that removing gill nets from coastal ecosystems has a positive impact on large marine fishes.