Mass Transport in Vegetated Shear Flows

Submerged aquatic vegetation has the potential to greatly improve water quality through the removal of nutrients, particulates and trace metals. The efficiency of this removal depends heavily upon the rate of vertical mixing, which dictates the timescale over which these constituents remain in the canopy. Continuous dye injection experiments were conducted in a flume with model vegetation to characterize vertical mass transport in vegetated shear flows. Through the absorbance–concentration relationship of the Beer–Lambert Law, digital imaging was used to provide high-resolution concentration profiles of the dye plumes. Vertical mass transport is dominated by the coherent vortices of the vegetated shear layers. This is highlighted by the strong periodicity of the transport and its simple characterization based on properties of the shear layer. For example, the vertical turbulent diffusivity is directly proportional to the shear and thickness of the layer. The turbulent diffusivity depends upon the size of the plume, such that the rate of plume growth is lower near the source. In the far-field, mass is mixed more than twice as rapidly as momentum. Finally, plume size is dictated predominantly by X, a dimensionless distance that scales upon the number of vortex rotations experienced by the plume.     

Does the canopy mixing layer model apply to highly flexible aquatic vegetation? Insights from numerical modelling

Vegetation is a characteristic feature of shallow aquatic flows such as rivers, lakes and coastal waters. Flow through and above aquatic vegetation canopies is commonly described using a canopy mixing layer analogy which provides a canonical framework for assessing key hydraulic characteristics such as velocity profiles, large-scale coherent turbulent structures and mixing and transport processes for solutes and sediments. This theory is well developed for the case of semi-rigid terrestrial vegetation and has more recently been applied to the case of aquatic vegetation. However, aquatic vegetation often displays key differences in morphology and biomechanics to terrestrial vegetation due to the different environment it inhabits. Here we investigate the effect of plant morphology and biomechanical properties on flow–vegetation interactions through the application of a coupled LES-biomechanical model. We present results from two simulations of aquatic vegetated flows: one assuming a semi-rigid canopy and the other a highly flexible canopy and provide a comparison of the associated flow regimes. Our results show that while both cases display canopy mixing layers, there are also clear differences in the shear layer characteristics and turbulent processes between the two, suggesting that the semi-rigid approximation may not provide a complete representation of flow–vegetation interactions.     

Characteristics of flow structure of free-surface flow in a partly obstructed open channel with vegetation patch

Free-surface flows over patchy vegetation are common in aquatic environments. In this study, the hydrodynamics of free-surface flow in a rectangular channel with a bed of rigid vegetation-like cylinders occupying half of the channel bed was investigated and interpreted by means of laboratory experiments and numerical simulations. The channel configurations have low width-to-depth aspect ratio (1.235 and 2.153). Experimental results show that the adjustment length for the flow to be fully developed through the vegetation patch in the present study is shorter than observed for large-aspect-ratio channels in other studies. Outside the lateral edge of the vegetation patch, negative velocity gradient (\(\partial \overline{u}/\partial z < 0\)) and a local velocity maximum are observed in the vertical profile of the longitudinal velocity in the near-bed region, corresponding to the negative Reynolds stress (\(- \overline{{u^{\prime}w^{\prime}}} < 0\)) at the same location. Assuming coherent vortices to be the dominant factor influencing the mean flow field, an improved Spalart–Allmaras turbulence model is developed. The model improvement is based on an enhanced turbulence length scale accounting for coherent vortices due to the effect of the porous vegetation canopy and channel bed. This particular flow characteristic is more profound in the case of high vegetation density due to the stronger momentum exchange of horizontal coherent vortices. Numerical simulations confirmed the local maximum velocity and negative gradient in the velocity profile due to the presence of vegetation and bed friction. This in turn supports the physical interpretation of the flow processes in the partly obstructed channel with vegetation patch. In addition, the vertical profile of the longitudinal velocity can also be explained by the vertical behavior of the horizontal coherent vortices based on a theoretical argument.     

Spatial evolution of coherent motions in finite-length vegetation patch flow

A number of experimental studies on submerged canopy flows have focused on fully-developed flow and turbulent characteristics. In many natural rivers, however, aquatic vegetation occurs in patches of finite length. In such vegetated flows, the shear layer is not formed at the upstream edge of the vegetation patch and coherent motions develop downstream. Therefore, more work is neededz to reveal the development process for large-scale coherent structures within vegetation patches. For this work, we considered the effect of a limited length vegetation patch. Turbulence measurements were intensively conducted in open-channel flows with submerged vegetation using Particle Image Velocimetry (PIV). To examine the transition from boundary-layer flow upstream of the vegetation patch to a mixing-layer-type flow within the patch, velocity profiles were measured at 33 positions in a longitudinal direction. A phenomenological model for the development process in the vegetation flow was developed. The model decomposed the entire flow region into four zones. The four zones are the following: (i) the smooth bed zone, (ii) the diverging flow zone, (iii) the developing zone and (iv) the fully-developed zone. The PIV data also confirmed the efficiency of the mixing-layer analogy and provided insight into the spatial evolution of coherent motions.     

Large eddy simulation of flow and scalar transport in a vegetated channel

Predicting flow and mass transport in vegetated regions has a broad range of applications in ecology and engineering practice. This paper presents large eddy simulation (LES) of turbulent flow and scalar transport within a fully developed open-channel with submerged vegetation. To properly represent the scalar transport, an additional diffusivity was introduced within the canopy to account for the contribution of stem wakes, which were not resolved by the LES, to turbulent diffusion. The LES produced good agreement with the velocity and concentration fields measured in a flume experiment. The simulation revealed a secondary flow distributed symmetrically about the channel centerline, which differed significantly from the circulation in a bare channel. The secondary circulation accelerated the vertical spread of the plume both within and above the canopy layer. Quadrant analysis was used to identify the form and shape of canopy-scale turbulent structures within and above the vegetation canopy. Within the canopy, sweep events contributed more to momentum transfer than ejection events, whereas the opposite occurred above the canopy. The coherent structures were similar to those observed in terrestrial canopies, but smaller in scale due to the constraint of the water surface.     

The three-dimensionality of obstructed shear flows

Obstructed shear flows (i.e. those over permeable media) are common in the environment. An archetypal example, flow over a submerged vegetation canopy, is investigated here. Like any flow through complex geometry, canopy flows are characterised by strong spatial gradients. The focus of this experimental study is the three-dimensionality of aquatic canopy flow, in particular that of the coherent interfacial vortices that govern mixing into and out of the canopy. It is shown here that the vortices have a finite lateral scale that is comparable to their vertical scale; both are of the order of the drag length scale of the canopy, (C _D a)⁻¹, where a is the frontal area density and C _D is a bulk drag coefficient. The finite lateral extent of the vortices generates strong lateral hydrodynamic gradients, both instantaneously and in the long-term. The instantaneous gradients, which can contribute greatly to the dispersion of dissolved and particulate species, are far more pronounced. Finally, the potential for canopies to generate differential roughness secondary circulation is examined. In the consideration of vertical scalar transport, this circulation can be of the same order as turbulent diffusion.     

Hydrodynamics and turbulence in emergent and sparsely vegetated open channel flow

This present study reports the results of an experimental study characterizing thorough variation of turbulent hydrodynamics and flow distribution in emergent and sparsely vegetated open channel flow. An emergent and rigid sparse vegetation patch with regular spacing between stems along the flow and transverse directions was fixed in the central region of the cross-section of open channel. Experiments were conducted in subcritical flow conditions and velocity measurements were obtained with an acoustic Doppler Velocimetry system. Large variations of the turbulence intensities, Reynolds shear stress, turbulent kinetic energy and vortical motions are found in and around the vegetation patch. At any cross-section through the interior of the vegetation patch, streamwise velocity decreases with increase in streamwise length and the velocity profiles converge from the log-law to a linear profile with increasing slope. Time-averaged lateral and vertical velocities inside the vegetation patch increase with increasing streamwise distance and converge from negative values to positive values. Turbulence intensities interior of the sparse vegetation patch are more than those of without the vegetation patch. Similar to the trend of streamwise velocity profiles inside the vegetation, turbulence intensities and longitudinal-normal Reynolds shear stress profile decreases with streamwise direction. In the interior of the vegetation patch and downstream of the trailing edge, turbulent kinetic energy profiles are exhibiting irregular fluctuations and the maximum values are occurring in the outer layer. Analysis of flow distribution confirms sparse vegetation patch is inducing a serpentine flow pattern in its vicinity. At the leading edge, flow is rushing towards the right hand sidewall, and at the trailing edge, flow is turning to the left hand sidewall. In between the leading and trailing edges, the streamlines are following a zig-zag fashion at varied degree along the streamwise and lateral directions. Immediate upstream of the leading edge and in the interior of the vegetation patch, vortex motion is clearly visible and the vortices are stretched along the width of the channel with streamwise direction.     

Compound channel flow with a longitudinal transition in hydraulic roughness over the floodplains

Flows in a compound open-channel (two-stage geometry with a main channel and adjacent floodplains) with a longitudinal transition in roughness over the floodplains are experimentally investigated in an 18 m long and 3 m wide flume. Transitions from submerged dense vegetation (meadow) to emergent rigid vegetation (wood) and vice versa are modelled using plastic grass and vertical wooden cylinders. For a given roughness transition, the upstream discharge distribution between main channel and floodplain (called subsections) is also varied, keeping the total flow rate constant. The flows with a roughness transition are compared to flows with a uniformly distributed roughness over the whole length of the flume. Besides the influence of the downstream boundary condition, the longitudinal profiles of water depth are controlled by the upstream discharge distribution. The latter also strongly influences the magnitude of the lateral net mass exchanges between subsections, especially upstream from the roughness transition. Irrespective of flow conditions, the inflection point in the mean velocity profile across the mixing layer is always observed at the interface between subsections. The longitudinal velocity at the main channel/floodplain interface, denoted \(U_{int}\), appeared to be a key parameter for characterising the flows. First, the mean velocity profiles across the mixing layer, normalised using \(U_{int}\), are superimposed irrespective of downstream position, flow depth, floodplain roughness type and lateral mass transfers. However, the profiles of turbulence quantities do not coincide, indicating that the flows are not fully self-similar and that the eddy viscosity assumption is not valid in this case. Second, the depth-averaged turbulent intensities and Reynolds stresses, when scaled by the depth-averaged velocity \(U_{d,int}\) exhibit two plateau values, each related to a roughness type, meadow or wood. Lastly, the same results hold when scaling by \(U_{d,int}\) the depth-averaged lateral flux of momentum due to secondary currents. Turbulence production and magnitude of secondary currents are increased by the presence of emergent rigid elements over the floodplains. The autocorrelation functions show that the length of the coherent structures scales with the mixing layer width for all flow cases. It is suggested that coherent structures tend to a state where the magnitude of velocity fluctuations (of both horizontal vortices and secondary currents) and the spatial extension of the structures are in equilibrium.     

Turbulence structure and coherent vortices in open-channel flows with wind-induced water waves

When wind-induced water waves appear over the free-surface flows such as natural rivers and artificial channels, large amounts of oxygen gas and heat are transported toward the river bed through the interface between water and wind layers. In contrast, a bed region is a kind of turbulent boundary layer, in which turbulence generation and its transport is promoted by the production of bed shear stress. In particular, coherent hairpin vortices, together with strong ejection events toward the outer part of the layer, promote mass and momentum exchanges between the inner and outer layers. It is inferred that such a near-bed turbulence may be influenced significantly by these air–water interfacial fluctuations accompanied with free-surface velocity shear and wind-induced water waves. However, these wind effects on the wall-turbulence structure are less understood. To address these exciting and challenging topics, we conducted particle imagery velocimetry (PIV) measurements in open-channel flows combined with air flows, and furthermore the present measured data allows us to investigate the effects of air–water interactions on turbulence structure through the whole depth region.     

Markovian–Octant analysis based stable turbulent shear stresses in near-bed bursting phenomena of vortex settling chamber

The coherent structure in near-bed turbulent boundary layer of vortex chamber, particularly the bursting events and their associated shear stresses play the main role in sediment flushing process and consequently the trap efficiency of the vortex settling chamber. Hence, three-dimensional velocity measurements were made at 48 points near the bed of physical model of vortex chamber by using Micro-ADV. The pattern of sediment deposition at the bed of vortex settling chamber reveals three separate regions formed by three predominant currents of inlet flow, flushing flow and outlet over flow. Additionally, due to the instability and three-dimensional nature of the bursting events near the bed of chamber, the new method of Markovian–Octant analysis was applied to study the different classes of near-bed stable shear stresses of vortex chamber in three dimensions. Moreover, the role of each class of stable shear stresses on Sediment transport mechanism at the bed of vortex chamber is investigated.     

Formation of tidal starting-jet vortices through idealized barotropic inlets with finite length

This paper presents a surface particle image velocimetry study to investigate the dynamics of shallow starting-jet dipoles formed by tidal flow through inlets and their interaction with vorticity formed at the inlet channel lateral boundaries. Vortical structure in the flow field is identified using a local swirl strength criterion evaluated from the two-dimensional flow field. The starting jet dipole vortices and vortices formed as the lateral boundary layers are expelled during flow reversal are characterized by their trajectory, size, and circulation. Using these quantities, a model is developed to predict the size and strength of the expelled lateral boundary layer vortices based on the inlet velocity, channel length, and width of the lateral boundary layer. The expelled boundary layer vortices are found to disrupt the formation of the primary tidal jet dipole through two mechanisms. First, because the boundary layer vortices themselves form a dipole with each half of the starting-jet dipole, the starting-jet vortices are pulled apart and advected away from the inlet mouth early in the tidal cycle, resulting in a reduction in the spin-up time and the amount of vorticity input during starting-jet vortex formation. Second, the advection of each dipole away from the inlet disconnects each starting-jet vortex from the starting jet; hence, the vortices are not fed by fluid in the jet or energized by shear in the jet boundary layers. These influences of the lateral boundary layer on the starting-jet vortices’ formation and propagation are found to be a function of the channel length L, maximum velocity U, and tidal period T, resulting in a predictive value to characterize their trajectory, strength, and evolution.     

Exchange flow between open water and floating vegetation

This study describes the exchange flow between a region with open water and a region with a partial-depth porous obstruction, which represents the thermally-driven exchange that occurs between open water and floating vegetation. The partial-depth porous obstruction represents the root layer, which does not penetrate to the bed. Initially, a vertical wall separates the two regions, with fluid of higher density in the obstructed region and fluid of lower density in the open region. This density difference represents the influence of differential solar heating due to shading by the vegetation. For a range of root density and root depths, the velocity distribution is measured in the lab using PIV. When the vertical wall is removed, the less dense water flows into the obstructed region at the surface. This surface flow bifurcates into two layers, one flowing directly through the root layer and one flowing beneath the root layer. A flow directed out of the vegetated region occurs at the bed. A model is developed that predicts the flow rates within each layer based on energy considerations. The experiments and model together suggest that at time- and length-scales relevant to the field, the flow structure for any root layer porosity approaches that of a fully blocked layer, for which the exchange flow occurs only beneath the root layer.     

Turbulent secondary flows in wall turbulence: vortex forcing,scaling arguments,and similarity solution

Spanwise surface heterogeneity beneath high-Reynolds number, fully-rough wall turbulence is known to induce a mean secondary flow in the form of counter-rotating streamwise vortices—this arrangement is prevalent, for example, in open-channel flows relevant to hydraulic engineering. These counter-rotating vortices flank regions of predominant excess(deficit) in mean streamwise velocity and downwelling(upwelling) in mean vertical velocity. The secondary flows have been definitively attributed to the lower surface conditions, and are now known to be a manifestation of Prandtl’s secondary flow of the second kind—driven and sustained by spatial heterogeneity of components of the turbulent (Reynolds averaged) stress tensor (Anderson et al. J Fluid Mech 768:316–347, 2015). The spacing between adjacent surface heterogeneities serves as a control on the spatial extent of the counter-rotating cells, while their intensity is controlled by the spanwise gradient in imposed drag (where larger gradients associated with more dramatic transitions in roughness induce stronger cells). In this work, we have performed an order of magnitude analysis of the mean (Reynolds averaged) transport equation for streamwise vorticity, which has revealed the scaling dependence of streamwise circulation intensity upon characteristics of the problem. The scaling arguments are supported by a recent numerical parametric study on the effect of spacing. Then, we demonstrate that mean streamwise velocity can be predicted a priori via a similarity solution to the mean streamwise vorticity transport equation. A vortex forcing term has been used to represent the effects of spanwise topographic heterogeneity within the flow. Efficacy of the vortex forcing term was established with a series of large-eddy simulation cases wherein vortex forcing model parameters were altered to capture different values of spanwise spacing, all of which demonstrate that the model can impose the effects of spanwise topographic heterogeneity (absent the need to actually model roughness elements); these results also justify use of the vortex forcing model in the similarity solution.     

Prediction of near-field shear dispersion in an emergent canopy with heterogeneous morphology

The evaluation of longitudinal dispersion in aquatic canopies is necessary to predict the behavior of dissolved species and suspended particles in marsh and wetland systems. Here we consider the influence of canopy morphology on longitudinal dispersion, focusing on transport before constituents have mixed over depth. Velocity and longitudinal dispersion were measured in a model canopy with vertically varying canopy density. The vertical variation in canopy morphology generates vertical variation in the mean velocity profile, which in turn creates mean-shear dispersion. We develop and verify a model that predicts the mean-shear dispersion in the near field from morphological characteristics of the canopy, such as stem diameter and frontal area. Close to the source, longitudinal dispersion is dominated by velocity heterogeneity at the scale of individual stems. However, within a distance of approximately 1 m, the shear dispersion associated with velocity heterogeneity over depth increases and eclipses this smaller-scale process.     

Visualization of the internal flow properties and the material exchange interface in an entraining viscous Newtonian gravity current

In order to simulate a simple entraining geophysical flow, a viscous Newtonian gravity current is released from a reservoir by a dam-break and flows along a rigid horizontal bed until it meets a layer of entrainable material of finite depth, identical to the current. The goal is to examine the entrainment mechanisms by observing the interaction between the incoming flow and the loose bed. The sole parameter varied is the initial volume of the gravity current, thus altering its height and velocity. The gravity current plunges or spills into the entrainable bed and the velocity of the flow front becomes linear with time. The bed material is directly affected: motion is generated in the fluid far downstream of, and in that lying beneath the encroaching front. Shear bands are identified, separating horizontal flow downstream from flow with a strong vertical component close to the step. Downstream of the step the flow is horizontal and stratified, with no slip on the bottom boundary and very low shear near the surface. Between these two regions may lie transitional zones with linear velocity profiles, separated by horizontal bands of high shear; the number of transitional zones in the cross-section varies with the initial volume of the dam-break.     

Characterization of bedload intermittency near the threshold of motion using a Lagrangian sediment transport model

At the smallest scales of sediment transport in rivers, the coherent structures of the turbulent boundary layer constitute the fundamental mechanisms of bedload transport, locally increasing the instantaneous hydrodynamic forces acting on sediment particles, and mobilizing them downstream. Near the critical threshold for initiating sediment motion, the interactions of the particles with these unsteady coherent structures and with other sediment grains, produce localized transport events with brief episodes of collective motion occurring due to the near-bed velocity fluctuations. Simulations of these flows pose a significant challenge for numerical models aimed at capturing the physical processes and complex non-linear interactions that generate highly intermittent and self-similar bedload transport fluxes. In this investigation we carry out direct numerical simulations of the flow in a rectangular flat-bed channel, at a Reynolds number equal to Re = 3632, coupled with the discrete element method to simulate the dynamics of spherical particles near the bed. We perform two-way coupled Lagrangian simulations of 48,510 sediment particles, with 4851 fixed particles to account for bed roughness. Our simulations consider a total of eight different values of the non-dimensional Shields parameter to study the evolution of transport statistics. From the trajectory and velocity of each sediment particle, we compute the changes in the probability distribution functions of velocities, bed activity, and jump lengths as the Shields number increases. For the lower shear stresses, the intermittency of the global bedload transport flux is described by computing the singularity or multifr actal spectrum of transport, which also characterizes the widespread range of transport event magnitudes. These findings can help to identify the mechanisms of sediment transport at the particle scale. The statistical analysis can also be used as an ingredient to develop larger, upscaled models for predicting mean transport rates, considering the variability of entrainment and deposition that characterizes the transport near the threshold of motion.     

Canopy-wake dynamics and wind sheltering effects on Earth surface fluxes

The atmospheric boundary layer adjustment at the abrupt transition from a canopy (forest) to a flat surface (land or water) is investigated in a wind tunnel experiment. Detailed measurements examining the effect of canopy turbulence on flow separation, reduced surface shear stress and wake recovery are compared to data for the classical case of a solid backward-facing step. Results provide new insights into the interpretation for flux estimation by eddy-covariance and flux gradient methods and for the assessment of surface boundary conditions in turbulence models of the atmospheric boundary layer in complex landscapes and over water bodies affected by canopy wakes. The wind tunnel results indicate that the wake of a forest canopy strongly affects surface momentum flux within a distance of 35–100 times the step or canopy height, and mean turbulence quantities require distances of at least 100 times the canopy height to adjust to the new surface. The near-surface mixing length in the wake exhibits characteristic length scales of canopy flows at the canopy edge, of the flow separation in the near wake and adjusts to surface layer scaling in the far wake. Components of the momentum budget are examined individually to determine the impact of the canopy wake. The results demonstrate why a constant flux layer does not form until far downwind in the wake. An empirical model for surface shear stress distribution from a forest canopy to a clearing or lake is proposed.     

Simulation of exchange flow between open water and floating vegetation using a modified RNG <Emphasis Type="Italic">k</Emphasis>-<Emphasis Type="Italic">ε</Emphasis> turbulence model

The paper focuses on the numerical simulation of the exchange flow between open water and floating vegetation, which plays an important role in maintaining the ecological balance by transporting nutrient matter. The simulation was conducted using a new solver developed upon OpenFOAM. A modified RNG k-ε turbulence model, which is expected to model both the high- and low-Reynolds number flows correctly, was used to determine the eddy viscosity. Several particular terms were added into the momentum equations and turbulence model equations to model the effects of vegetation and buoyancy. Among these terms, the term for the effect of vegetation in the ε-equation was re-modelled. The model was validated by properly predicting the profiles of mean velocity and turbulent kinetic energy for flows through suspended canopies. The density flow between open and vegetated water was simulated with the same conditions as those of the experiment conducted by Zhang and Nepf. The predicted results agreed well with the experimental data and provided more detailed information of such exchange flow. The convection between the root layer and the layer beneath the roots, which was not observed in the experiment, was observed in the numerical simulation.     

Influence of a flooding event discharge on accretion in wetlands

Flooding events in wetlands transport sediment particles landwards and can increase accretion in some areas of the wetland or resuspend the sediment in other areas. In this study a flooding event with different water discharges was analyzed in a laboratory simulated wetland to determine the effect stem density has on particle trapping. The discharge that entered the simulated wetland was a particle laden barotropic current that initially produced a pulse that traveled through the wetland. After the first pulse, a baroclinic current, with a different timescale to the initial pulse, developed. Three stem densities, along with the ‘without plant case’, were considered. A semi-empirical model was formulated to explain the propagation of the water pulse. The model predicted the velocity of the pulse dampening in the presence of the simulated vegetation, by using the roughness parameter that had been found to increase with stem density. The baroclinic current propagated at a lower velocity than the pulse did, and its velocity decreased with stem density. As less sediment was found in the wetland with denser canopies, this indicates that the presence of a canopy acts as a barrier to sediment transportation. Furthermore, a greater amount of sediment was deposited in regions at the foot of the denser vegetated wetland zone and the sediment deposition also increased with the water discharge.     

Analytical model for vertical velocity profiles in flows with submerged shrub-like vegetation

An analytical solution for the vertical profiles of the horizontal velocity of channel flow with submerged shrub-like vegetation is investigated in this paper. At first, a shape function is proposed to fit the diameter change of different types of shrub-like vegetation. Using the momentum theorem and the mixing-length turbulence model, an analytical solution for the vertical profile of the horizontal velocity within the vegetation is obtained. The velocity distribution of the whole column is determined in tandem with the logarithmic velocity profile above the vegetation. The solution is compared with experimental data in excellent agreement. The results show that the flow above the vegetation has a logarithmic velocity profile while the flow within the vegetation is impacted greatly by the shape and density of vegetation. The flows within shrub-like vegetations are non-uniform and vary inversely with the shrub diameter.