Application to the Port of Sines of a new tool for risk assessment in port navigation

This paper describes a first approach on the risk assessment in port navigation using GUIOMAR, an integrated system for port and coastal engineering modelling developed at the National Civil Engineering Laboratory (LNEC), Portugal, using a GIS software environment. A set of automatic procedures was designed to include a new methodology based on the amplitude of the wave-induced vertical movement of a ship along its trajectory. In this methodology, the risk in port navigation is assessed on the basis of a combination of the probability of exceedance of a pre-set threshold for the ship??s vertical movements and its consequences. To test the new procedures, a set of sea wave records obtained at the Sines wave-buoy from 1988 to 2002 was transferred into Sines Port using two numerical models of sea wave propagation and deformation (SWAN and DREAMS), included in the GUIOMAR system. The numerical model WAMIT was used for estimating the wave-induced ship??s vertical movements inside the port. By applying the new procedures, automatic generation of risk maps was carried out for navigation in the vicinity of the West breakwater of the Port of Sines. The recent developments contribute towards a more versatile and efficient GUIOMAR system, which results in a more adequate tool to support decision-making processes in port and coastal management.     

Assessing the antipredatory defensive strategies of Caribbean non-scleractinian zoantharians (Cnidaria): is the sting the only thing?

The relative importance of chemical, nematocyst, and nutritional defenses was examined for 18 species of Caribbean sea anemones (actinarians), zoanthids, and mushroom polyps (corallimorpharians) from the Florida Keys and the Bahamas Islands, 2008–2010. Feeding assays were performed using the fish Thalassoma bifasciatum with artificial foods containing crude organic extracts of cnidarian tissues. A novel behavioral assay using brine shrimp nauplii was used to assess nematocyst defenses. The nutritional quality of cnidarian tissues was examined using bomb calorimetry and soluble protein assays. In general, actinarians invested in nematocyst defenses, zoanthids in either nematocyst or chemical defenses, and corallimorpharians lacked both, except for 1 of 3 species that was chemically defended. Relative to other coral reef invertebrates, cnidarian tissues had similar caloric values but lower soluble protein concentrations. Trade-offs between chemical and nematocyst defenses were observed for 65% of species, while habitat and behavior provided a likely explanation for undefended species.     

Growth dynamics of the seagrass <Emphasis Type="Italic">Halophila nipponica</Emphasis>, recently discovered in temperate coastal waters of the Korean peninsula

Seagrass species in the genus Halophila are usually distributed in tropical or subtropical areas, but a Halophila species identified as H. nipponica was first observed in temperate coastal regions of Korea in 2007. Since this species mainly occurs in warm temperate regions influenced by warm currents, we hypothesized that H. nipponica may exhibit different growth patterns from those of other temperate seagrass species in Korea, instead showing similar growth dynamics to tropical/subtropical species. The growth and morphology of H. nipponica in relation to coincident measurements of environmental factors were investigated from July 2008 to September 2009 to examine the growth dynamics of this species. Water temperature at the study site ranged from 9.7°C in January to 25.1°C in August. Shoot density, biomass, and productivity exhibited significant seasonal variation, increasing during summer and decreasing during winter. Productivity was severely restricted to nearly ceasing at water temperatures less than 15°C, and winter minimum growth lasted until May. The optimal temperature for H. nipponica growth was approximately 25°C, which was the maximum water temperature at the study site, and no growth reduction in high summer water temperature was observed. Thus, H. nipponica on the temperate coast of Korea exhibited a distinctly different growth pattern from those of temperate seagrass species in Korea, which have shown great reductions in growth at water temperatures higher than 20°C. Higher below- to above-ground ratio and leaf burial into sediments with shorter leaf petioles during winter might be overwintering strategies in this species. The growth patterns of H. nipponica at the study site imply that this species still possess the tropical characteristics of the genus Halophila.     

A new quantitative analysis of ovarian development in echinoderms: the maturity stage index

This study developed an objective quantitative method for detecting small-scale temporal or spatial differences in gametogenesis in echinoderms. The method was applied to conventional monthly samples of the planktotrophic brittle star, Ophiopholis aculeata, collected at a single site in Newfoundland (eastern Canada) at 10–15 m depth. The samples were analysed to determine gonad index, oocyte size and gonadal stage using histology. The maturity stage index (MSI) was developed to integrate a measure of brittle star size (disc diameter), oocyte size and oocyte density. The MSIs ranged from 0 to 800 and had significantly different means among the four gametogenic stages (early growth, growth, mature and spent). The MSI was more sensitive in revealing significant differences between consecutive stages than any of its individual constituents. The MSI was also applied to gametogenic data from the lecithotrophic holothuroid, Mesothuria lactea, again revealing significant differences between successive oogenic stages. This method is expected to be useful in field and experimental studies of gametogenesis in echinoderms (and possibly other taxa), where it is important to detect not just the timing of annual peaks in reproduction but small differences in reproductive status among individuals or populations (e.g. from different habitats or feeding regimes).     

Ontogenic variations in fatty acid and alcohol composition of the pelagic amphipod <Emphasis Type="Italic">Themisto libellula</Emphasis> in Kongsfjorden (Svalbard)

The fatty acid and alcohol composition of the pelagic amphipod, Themisto libellula, was monitored during the 5 first months of its life cycle (4–20 mm length) in an Arctic fjord, Kongsfjorden, Svalbard. Fatty acids of the three major lipid classes, polar lipids (PL), triacylglycerol (TAG), and wax esters (WE), were analyzed to highlight ontogenic changes in their diet and metabolism. The PL composition of T. libellula did not show any strong variations along their growth except during the first month where an important increase of 20:5(n-3) (EPA) and 22:6(n-3) (DHA) was observed. The TAG composition revealed a clear gradient corresponding to a diet shift from omnivorous juveniles toward carnivorous sub-adults and adults. Indeed, fatty acid trophic markers of diatoms were dominant in the juveniles, whereas 20:1(n-9) and 22:1(n-11), the Calanus sp. trophic markers, overwhelmed in the older stages. The WE composition highlighted the same general trend, however, differences were found with the TAG and are discussed as a result of differences in turnover rates and assimilation pathways between the two lipid classes.     

Shell preference in a hermit crab: comparison between a matrix of paired comparisons and a multiple-alternative experiment

The preference of the hermit crab, Calcinus californiensis, among six species of shells, was tested by two different experiments. The first experiment used pair-wise trials, analyzing the preference by Chi-square tests using two different constructions of the null hypothesis. One hypothesis was based on a no-preference among shell species, the second on comparing the number of crabs changing for a particular shell species when two options were given versus the changing when no options were offered. The second experiment was a multiple-alternative test based on a rank ordering of the shell preference. This method has both statistical and resource-saving advantages over the traditional pair-wise comparisons. The sequence of shell preference was similarly independent of the procedure used. The preferred shell species are heavy and might be associated with hydrodynamic advantages and with the protection against predation. The shell preference matches with the pattern of shell occupancy indicating that the shell use in nature is determined by the crab’s preference. The information generated may be used for further research on shell preference as a methodological alternative.     

The effect of egg versus seston quality on hatching success,naupliar metabolism and survival of <Emphasis Type="Italic">Calanus finmarchicus</Emphasis> in mesocosms dominated by <Emphasis Type="Italic">Phaeocystis</Emphasis> and diatoms

We studied the effect of a developing Skeletonema marinoi/Phaeocystis spp. bloom on Calanus finmarchicus hatching success, early naupliar survival and metabolism. Our focus was (1) on the development of reproductive rates during a bloom initiation, peak and decline in relation to the production of potentially toxic algal metabolites and (2) on the proportional importance of female nutrition versus naupliar food environment for the production of viable nauplii. Despite polyunsaturated aldehyde (PUA) production by both S. marinoi and Phaeocystis sp., we did not observe any harmful effects on hatching success or naupliar survival and condition in any stages of the short-term (<1 week) algal bloom. Hatching success appeared to be controlled by egg lipid composition, while the beneficial effect of a high food concentration was reflected in naupliar RNA:DNA ratio, protein content and total production of viable nauplii. The egg lipids reflected seston lipids, indicating that the egg fatty acid composition was not modified by the females. Our results suggest that unselective feeding and/or retention of specific lipids can induce qualitative food limitation, although recruitment during the S. marinoi/Phaeocystis sp. bloom was high.     

Isotopic fractionation between seawater and the shell of <Emphasis Type="Italic">Scrobicularia plana</Emphasis> (Bivalvia) and its application for age validation

This study analyzed the isotopic profiles of four aragonitic shells of Scrobicularia plana in conjunction with measured seawater temperatures and salinities. Comparison of δ¹⁸O_SHELL with expected values revealed fractionation of δ¹⁸O in near equilibrium with the ambient environment. Growth cessation occurred between November and March. Carbonate deposition stopped when temperatures were <12°C. Analysis of δ¹³C_SHELL values suggested that carbon in the shell does not reflect the DIC in ambient water, likely due to the incorporation of metabolic carbon. An ontogenetic trend of increasing δ¹³C values over time was observed, likely related to changes in metabolic activity. Annual growth patterns were inferred from δ¹⁸O_SHELL profiles and compared with internal and external growth lines. Estimations of age based on external lines were unreliable, resulting in overestimation of age and underestimation of growth rates, likely due to the disturbance lines being wrongly identified as annual. Analysis of internal lines may lead to over- or underestimation of age and was more reliable in recent portions of the shell.     

The distribution of herbivorous fishes on the Great Barrier Reef

The composition and functionality of ecologically important herbivorous fish assemblages were examined throughout much of Australia’s Great Barrier Reef (GBR). Diversity and abundance of surgeonfishes (Acanthuridae), parrotfishes (Labridae) and rabbitfishes (Siganidae) were strongly associated with position on the continental shelf, whilst effects of latitude were weaker and inconsistent. Species distributions varied considerably amongst taxonomic groups; parrotfishes were mostly widespread whilst distributions of surgeonfishes were often restricted. Most inshore environments supported depauperate herbivore assemblages dominated by different taxa and functional groups compared with assemblages in offshore environments. There were also strong cross-shelf transitions in the main taxa performing each functional role. Overall, this study show that the functional contributions of herbivorous fish assemblages to important ecosystem processes and the contributing taxa vary considerably amongst different GBR environments. Additionally, the two most numerically dominant herbivores actively select detritus, not algae, supporting increasing evidence for the importance of detritus in coral reef ecology.     

Low levels of global genetic differentiation and population expansion in the deep-sea teleost <Emphasis Type="Italic">Hoplostethus atlanticus</Emphasis> revealed by mitochondrial DNA sequences

The orange roughy Hoplostethus atlanticus is a well-known commercial species with a global distribution. There is no consensus about levels of connectivity among populations despite a range of techniques having been applied. We used cytochrome c oxidase subunit I (COI) and cytochrome b sequences to study genetic connectivity at a global scale. Pairwise Φ_ST analyses revealed a lack of significant differentiation among samples from New Zealand, Australia, Namibia, and Chile. However, low but significant differentiation (Φ_ST = 0.02–0.13, P < 0.05) was found between two Northeast Atlantic sites and all the other sites with COI. AMOVA and the haplotype genealogy confirmed these results. The prevalent lack of genetic differentiation is probably due to active adult dispersal under the stepping-stone model. Demographic analyses suggested the occurrence of two expansion events during the Pleistocene period.