A Reassessment of Homozygosity and the Case for Inbreeding Depression in the Cheetah, Acinonyx jubatus: Implications for Conservation

Preservation of genetic diversity within declining populations of endangered species is a major concern in the discipline of conservation biology. The endangered cheetah, Acinonyx jubatus , exhibits relatively little genetic variability (polymorphism = 0.02–0.04, heterozygosity = 0.0004–0.014). Since the discovery of the cheetah's relative homozygosity, this species has been frequently cited as an example of one whose survival may be compromised by the loss of genetic diversity. The cheetah's genetic uniformity is generally believed to be the result of an historical population bottle-neck followed by a high level of inbreeding. Evidence offered in support of this hypothesis includes the cheetah's present low level of genetic variability and symptoms of inbreeding depression in captive populations. Using available data on fluctuating asymmetry and genetic variation in other carnivores, I question the assumption that the present level of genetic diversity in the cheetah is indicative of a loss of former variability. Carnivores exhibit significantly lower levels of genetic variation than other mammals, and several carnivores for which data are available exhibit lower levels of heterozygosity and polymorphism than the cheetah does. Measures of fluctuating asymmetry do not support the hypothesis that the cheetah is suffering an increased level of bomozygosity due to genetic stress. Many of the phenotypic effects attributed to inbreeding depression, such as infertility, reduced litter sizes, and increased susceptibility to disease, are limited to captive individuals and may be explained as physiological or behavioral artifacts of captivity. In sum, the genetic constitution of the cheetah does not appear to compromise the survival of the species. Conservation efforts may be more effectively aimed at a real, immediate threat to the cheetah's future: the loss of its natural habitat.     

Adaptation to climate change and other stressors among commercial and small-scale South African farmers

Commercial and small-scale farmers in South Africa are exposed to many challenges. Interviews with 44 farmers in the upper Thukela basin, KwaZulu-Natal, were conducted to identify common and specific challenges for the two groups and adaptive strategies for dealing with the effects of climate and other stressors. This work was conducted as part of a larger participatory project with local stakeholders to develop a local adaptation plan for coping with climate variability and change. Although many challenges related to exposure to climate variability and change, weak agricultural policies, limited governmental support, and theft were common to both farming communities, their adaptive capacities were vastly different. Small-scale farmers were more vulnerable due to difficulties to finance the high input costs of improved seed varieties and implements, limited access to knowledge and agricultural techniques for water and soil conservation and limited customs of long-term planning. In addition to temperature and drought-related challenges, small-scale farmers were concerned about soil erosion, water logging and livestock diseases, challenges for which the commercial farmers already had efficient adaptation strategies in place. The major obstacle hindering commercial farmers with future planning was the lack of clear directives from the government, for example, with regard to issuing of water licences and land reform. Enabling agricultural communities to procure sustainable livelihoods requires implementation of strategies that address the common and specific challenges and strengthen the adaptive capacity of both commercial and small-scale farmers. Identified ways forward include knowledge transfer within and across farming communities, clear governmental directives and targeted locally adapted finance programmes.     

PCDD/F mass balance in the flue gas cleaning units of a MSW incineration plant

With the main purpose of evaluating PCDD/F presence and the corresponding mass balance over the emissions control system, an extensive study was performed on a municipal solid waste full scale incinerator equipped with a best available technology flue gas treatment line. Present paper reports the main results obtained, with particular reference to the PCDD/F concentration profiles and mass balances derived for every process unit of the flue gas control system. Total release evaluated for the plant is also outlined compared with data on PCDD/F content of raw waste and with reference values included in most recent guidelines.     

Polychlorinated biphenyl (PCB) congeners and chlorinated pesticides in a cod liver oil reference material

A cod liver oil reference material, Standard Reference Material (SRM) 1588, which was issued by the National Institute of Standards and Technology (NIST) in 1989, has certified concentrations for five polychlorinated biphenyl (PCB) congeners and ten chlorinated pesticides. Recently, this SRM has been extensively characterized by additional analyses at NIST and by analyses at the Canadian Wildlife Service (CWS) where the SRM was used as a control sample during routine analyses of wildlife tissue specimens. In this paper the results from NIST and CWS are compared and the concentrations for over 40 PCB congeners and 20 chlorinated hydrocarbons are reported.     

Air and soil dioxin levels at three sites in Italy in proximity to MSW incineration plants

Levels of polychlorinated dibenzo-p-dioxins (PCDD) and polychlorinated dibenzofurans (PCDF) in both air and soil samples were measured at three different sites in Italy, in proximity to three municipal solid waste incinerators (MSWIs) to determine baseline contamination and the contributory role of incinerator emissions. At the first site, located in an agricultural, cattle-breeding, typically flattish area of the Po Valley, the dioxin concentrations had already been measured before the start-up of the new MSWI. These dioxin concentrations were then again measured after two years of continual operation of the incinerator. Despite the presence of the plant, the PCDD/Fs concentrations appear not to have been affected and were found to be in a range of 22-125 fg I-TEQ m(-3) in the air samples and 0.7-1.5 pg I-TEQ g(-1) in the soil samples. The second site is located in an industrial district of the Veneto Region, in the surroundings of an old MSWI that is not equipped with Best Available Technology (BAT) dioxin removal system. The PCDD/Fs concentrations in the air samples were between 144 and 337 fg I-TEQ m(-3). This is a typical range of values for industrial areas, while the soil samples showed contamination levels between 1.1 and 1.4 pg I-TEQ g(-1). The third site lies in the Adige Valley, near a MSWI that has been equipped with BAT for flue gas cleaning. The observed values ranged from 10 to 67 fg I-TEQ m(-3) for the air samples and 0.08-1.2 pg I-TEQ g(-1) for the soil samples. The contributory factors of the varying characteristics of the different areas together with the types of technology adopted at each MSWI plant are discussed. The PCDD/Fs levels are subsequently compared with established values from previous studies.     

Viruses Surveillance Under Different Season Scenarios of the Negro River Basin,Amazonia, Brazil

The Negro River is located in the Amazon basin, the largest hydrological catchment in the world. Its water is used for drinking, domestic activities, recreation and transportation and water quality is significantly affected by anthropogenic impacts. The goals of this study were to determine the presence and concentrations of the main viral etiological agents of acute gastroenteritis, such as group A rotavirus (RVA) and genogroup II norovirus (NoV GII), and to assess the use of human adenovirus (HAdV) and JC polyomavirus (JCPyV) as viral indicators of human faecal contamination in the aquatic environment of Manaus under different hydrological scenarios. Water samples were collected along Negro River and in small streams known as igarapés. Viruses were concentrated by an organic flocculation method and detected by quantitative PCR. From 272 samples analysed, HAdV was detected in 91.9 %, followed by JCPyV (69.5 %), RVA (23.9 %) and NoV GII (7.4 %). Viral concentrations ranged from 10² to 10⁶ GC L^?1 and viruses were more likely to be detected during the flood season, with the exception of NoV GII, which was detected only during the dry season. Statistically significant differences on virus concentrations between dry and flood seasons were observed only for RVA. The HAdV data provides a useful complement to faecal indicator bacteria in the monitoring of aquatic environments. Overall results demonstrated that the hydrological cycle of the Negro River in the Amazon Basin affects the dynamics of viruses in aquatic environments and, consequently, the exposure of citizens to these waterborne pathogens.     

瓦里关气相色谱法大气CO_2和CH_4在线观测数据处理分析

加强我国本底站温室气体数据资源的科学管理与共享,首先应保证观测全流程的标准化和规范化,确立数据处理和质量控制方法.我国青海瓦里关全球本底站自1994年开始了气相色谱-氢火焰离子化检测器法(GC-FID)大气CO2和CH4在线观测,本文详细讨论了该系统原始资料采集、数据信息合并、时间序列检查、观测员级质量控制和专家级质量控制等流程.利用局部近似回归法对大气CO2和CH4数据进行本底值筛分,获得CO2本底数据百分比约占有效数据的72%、CH4占44%.在线观测的CO2和CH4月平均浓度与同期瓶采样分析结果基本一致,相对偏差均在±0.5%以内.经流程化处理和质控的瓦里关大气CO2和CH4本底浓度变化资料已进入全球同化数据库(Globalview-CO2、Globalview-CH4),报送世界温室气体数据中心(WDCGG)并应用于世界气象组织(WMO)温室气体公报和联合国政府间气候变化专门委员会(IPCC)评估.     

Understanding multiple ecological responses to anthropogenic disturbance: rivers and potential flow regime change

Human-induced alteration of the natural flow regime is a major threat to freshwater ecosystems and biodiversity. The effects of hydrological alteration on the structural and functional attributes of riverine communities are expected to be multiple and complex, and they may not be described easily by a single model. Based on existing knowledge of key hydrological and ecological attributes, we explored potential effects of a flow-regulation scenario on macroinvertebrate assemblage composition and diversity in two river systems in Australia's relatively undeveloped wet-dry tropics. We used a single Bayesian belief network (BBN) to model potential changes in multiple assemblage attributes within each river type during dry and wet seasons given two flow scenarios: the current, near-natural flow condition, and flow regulation. We then used multidimensional scaling (MDS) ordination to visually summarize and compare the most probable attributes of assemblages and their environment under the different scenarios. The flow-regulation scenario provided less certainty in the ecological responses of one river type during the dry season, which reduced the ability to make predictions from the BBN outputs directly. However, visualizing the BBN results in an ordination highlighted similarities and differences between the scenarios that may have been otherwise difficult to ascertain. In particular, the MDS showed that flow regulation would reduce the seasonal differentiation in hydrology and assemblage characteristics that is expected under the current low level of development. Our approach may have wider application in understanding ecosystem responses to different river management practices and should be transferred easily to other ecosystems or biotic assemblages to provide researchers, managers, and decision makers an enhanced understanding of ecological responses to potential anthropogenic disturbance.     

Three-way compositional analysis of water quality monitoring data

Water quality monitoring data typically consist of \(J\) parameters and constituents measured at \(I\) number of static locations at \(K\) sets of seasonal occurrences. The resulting \(I \times J \times K\) three-way array can be difficult to interpret. Additionally, the constituent portion of the dataset (e.g., major ion and trace element concentration, pH, etc.) is compositional in that it sums to a constant (e.g., 1 kg/L) and is mathematically confined to the simplex, the sample space for compositional data. Here we apply a Tucker3 model on centered log-ratio data to find low dimensional representation of latent variables as a means to simplify data processing and interpretation of three years of seasonal compositional groundwater chemistry data for 14 wells at a study site in Wyoming, USA. The study site has been amended with treated coalbed methane produced water, using a subsurface drip irrigation system, to allow for irrigation of forage crops. Results from three-way compositional data analysis indicate that primary controls on water quality at the study site include: solutes concentration by evapotranspiration, cation exchange, and dissolution of native salts. These findings agree well with results from more detailed investigations of the site. In addition, the model identified Ba uptake during gypsum precipitation in some portions of the site during the final 6–9 months of investigation, a process for which the timing and extent had not previously been identified. These results suggest that multi-way compositional analyses hold promise as a means to more easily interpret water quality monitoring data.