Analysis of sex sequences by means of generalized linear mixed models

Adaptive strategies of sex allocation functioning to increase fitness, including strategic allocation of sex in relation to birth order and sex composition of the progeny, have frequently been explored, but the development of a statistical framework for these analyses has lagged behind. In this paper, we contribute to filling this gap by devising a method for analyzing sex sequences based on a proper parameterization of generalized linear mixed models (GLMMs). The method is highly flexible and can be easily extended to investigate sequences of traits or events or other longitudinal data. As a worked example, we focus on the analysis of sex sequences of offspring produced by females in a single reproductive event and develop a method that allows analyzing simultaneously sequences of different length (e.g., clutches of different size) and sequences with missing data, as may frequently happen in “real-world” data sets. Different patterns of allocation among traits or events along the sequence were investigated, and a real data base of sex sequences of eclectus parrots (Eclectus roratus) fledglings produced by different females was analyzed. A tutorial for running the analyses with the R or the SAS software is provided in the Electronic Supplementary Material.     

Greening the structural change process: ranking sustainability of countries in climate change

This paper proposes an analytical toolkit to measure the sustainability of industrialization across countries. Drawing from a methodology developed to analyze economic development as a process of modernization, it ranks countries on the basis of the emissions they produce and their stage of development. The proposed index penalizes environmental pressures taking into account the modernization level of a country. The paper also proposes an assessment of the environmental performance of countries at the same level of modernization. It introduces the notion of policy space as the difference between the best and worst environmental performer at a given level of modernization. An important finding of the paper is that the magnitude of the policy space is not homogenous across different levels of income and environmental targets.     

镉胁迫对芒草根际细菌群落结构、共发生网络和功能的影响

芒草（Miscanthus）作为第二代能源植物,已用于重金属污染土壤修复研究,但目前该过程中土壤细菌群落组成和功能研究开展较少.以芒草品种南荻（M.saccariflorus）为研究对象,通过高通量测序结合分子生态网络分析和PICRUSt功能预测,分析研究100 mg·kg^-1 Cd的胁迫对芒草根际细菌群落组成、共发生网络和功能的影响.MiSeq测序表明芒草根际细菌群落由32个门和425个属的细菌组成,包含鞘氨醇单胞菌属（Sphingomonas）、芽孢杆菌属（Bacillus）、芽单胞菌属（Gemmatimonas）和链霉菌属（Streptomyces）等植物促生细菌（PGPR）种群.相似性分析（ANOSIM）和非参数多元方差分析（Adonis）表明,Cd的添加能显著影响芒草根际细菌群落组成,降低其群落多样性.同时分子生态网络分析表明Cd的添加降低了芒草根际细菌之间的相互作用,导致其网络结构更为简单;降低了网络缓冲环境变化的能力;提高了负相关连线数,使根际细菌物种之间的竞争关系更强;改变关键细菌组成.PICRUSt功能预测分析表明Cd的胁迫降低了芒草根际土壤细菌功能.本研究初步分析了芒草根际细菌群落组成及其对镉胁迫的响应,为后续调控芒草修复效率提供了基础.     

Occurrence of imidacloprid,carbendazim, and other biocides in Italian house dust: Potential relevance for intakes in children and pets

The occurrence of pesticides intended for non-agricultural use was investigated in 206 dust samples drawn from vacuum-cleaner bags from residential flats in Italy. The multi-residue analysis targeted on 95 different active principles was performed with UPLC-MS/MS, with a Limit of Quantification (LOQ) of 0.008 μg/g dry weight. The results indicated the presence of imidacloprid (IMI) and carbendazim (CARB) in 30% and 26% of the samples, with a mean and P95 concentration between 1.6 and 39 and between 0.08 and 4.9 μg/g, respectively. Combined presence of two biocides was noted in 19.4% samples, of three biocides in 9.2% samples, of four biocides in 3.4% samples, and of five and six biocides in 0.5% and 1% samples, respectively. According to the estimated dust intake in infants/toddlers aged 6–24 months (16–100 mg d^?1) and cats (200 mg d^?1), it was possible to obtain risk characterization with respect to the Acceptable Daily Intake (ADI) for IMI of 0.060 mg/kg body weight (bw) proposed by the European Food Safety Authority (EFSA) and the chronic Population Adjusted Dose (cPAD) of 0.019 mg/kg bw d^?1 by US-EPA. Under the worst-case scenario, the presence of IMI in dust indicates potential exceedance of the cPAD in kittens, to be considered as sentinel also accounting for combined exposure. This study highlights the relevance of consumer empowerment about the responsible use of pesticides as biocidal products in indoor environment.     

Aerosol and ozone observations during six cruise campaigns across the Mediterranean basin: temporal,spatial, and seasonal variability

The Mediterranean basin, because of its semi-enclosed configuration, is one of the areas heavily affected by air pollutants. Despite implications on both human health and radiative budget involving an increasing interest, monitoring databases measuring air pollution directly over this area are yet relatively limited. Owing to this context, concentrations of fine (PM_2.5) and coarse (PM_2.5–10) particles along with other ancillary data, such as ozone levels and meteorological parameters, were measured during six cruise campaigns covering almost the whole Mediterranean basin. Elemental composition of both PM_2.5 and PM_2.5–10 was also determined to identify specific tracers for different classes of particles that can be found in the Mediterranean atmosphere. Outcomes resulting from the integration of a preliminary qualitative examination with a more quantitative analysis, based on receptor modelling, suggested that European continental influence, Saharan dust outbreaks, wildfire events, sea spray and fossil fuel combustion were the leading causes of the aerosol-ozone variations within the Mediterranean basin. Shipping emissions, consisting in both local harbours and maritime traffic across the basin, were also tested using the marker ratio of V/Ni. Peak values observed for coarse fraction have shown to be driven by the occurrence of African dust events. Considering the major influence of Continental pollution and wildfire events, the spatial variability resulted in larger fine particle concentrations and higher ozone levels over the Eastern Mediterranean side in comparison to the Western one.     

Polycyclic aromatic hydrocarbon contamination in an urban area assessed by Quercus ilex leaves and soil

We investigated the PAH contamination of Naples urban area, densely populated and with high traffic flow, by analyses of environmental matrices: soil and Quercus ilex leaves. Being some PAHs demonstrated to have hazardous effects on human health, the accumulation of carcinogenic and toxic PAHs (expressed as B(a)Peq) was evaluated in the leaves and soil. The main sources of the PAHs were discriminated by the diagnostic ratios in the two matrices. The urban area appeared heavily contaminated by PAHs, showing in soil and leaves total PAH concentrations also fivefold higher than those from the remote area. The soil mainly accumulated heavy PAHs, whereas leaves the lightest ones. Median values of carcinogenic PAH concentrations were higher in soil (440 ng g^?1 d.w.) and leaves (340 ng g^?1 d.w.) from the urban than the remote area (60 and 70 ng g^?1 d.w., respectively, for soil and leaves). Also, median B(a)Peq concentrations were higher both in soil and leaves from the urban (137 and 63 ng g^?1 d.w., respectively) than those from the remote area (19 and 49 ng g^?1 d.w., respectively). Different from the soils, the diagnostic ratios found for the leaves discerned PAH sources in the remote and urban areas, highlighting a great contribution of vehicular traffic emission as main PAH source in the urban area.     

Polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) in milk from Italian women living in Rome and Venice

The levels of selected polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) were measured in human milk samples from the areas of Venice and Rome, primarily in order to characterize the current levels of infant exposure to PCBs and PBDEs due to breast feeding in Italy. Sixteen non-dioxin-like PCBs, including the traditional indicator congeners, and 11 PBDEs, comprising the relevant PBDE-47, PBDE-99, and PBDE-153, were determined. Congeners were selected for analysis according to their relative abundance in human tissues, toxicological relevance, and diffusion in the environment. Dietary habits of the milk donors were recorded by questionnaires; mothers of the Venice area were classified into three groups according to their consumption of local fish, molluscs, and other fishery products. Sigma(16)(PCBs) and Sigma(11)(PBDEs) (ng g(-1) fat) for the areas of Venice and Rome were respectively, 250-390 and 240, and 1.6-2.8 and 4.1. An increase of fish and fishery product consumption could not be associated with an increase of PCB and PBDE levels in milk.     

Prenatal diagnosis and management of fetal ovarian cysts

Congenital ovarian cysts are a pathological condition which can be diagnosed in utero by ultrasound. We report 14 consecutive diagnoses of fetal ovarian cysts, obtained in the second and third trimesters of pregnancy. Congenital ovarian cysts have almost invariably a good prognosis, and no change in the standard obstetrical management is required. However, the evolution of the disease in utero is extremely variable. The cyst may increase in size, decrease or even disappear, or undergo complications such as torsion and rupture, which may carry some risks to the fetus. When a fetal ovarian cyst is detected, serial ultrasound examinations should be performed. If one of the above complications is suspected, the option of prompt caesarean section should be considered.     

Prenatal analysis of the insulin receptor gene in a family with leprechaunism

Leprechaunism is an autosomal recessive disease characterized by intrauterine and postnatal growth restriction, loss of glucose homeostasis, and severe insulin resistance. This disease is caused by a failure of function of the insulin receptor and is lethal early in life. Here we report the prenatal diagnosis of leprechaunism in one consanguineous family, Atl-1, in which two homozygous-affected siblings died with leprechaunism. The mutation in their insulin receptor impaired insulin binding and altered receptor signalling. Prenatal diagnosis could not be accomplished using insulin binding to cultured amniocytes, but was possible using mutational analysis of the insulin receptor gene in DNA from amniotic cells.