Phytoplankton distribution during two contrasted summers in a Mediterranean harbour: combining automated submersible flow cytometry with conventional techniques

Present study was conducted in rapidly growing city Islamabad, and surface soils were collected from three major land cover types viz., built-up, drain side, and green areas. A total of seven physicochemical parameters and 11 metals were determined in surface soils. Factor analysis based on principal component analysis explained total variance of 68.0%, 64.5%, and 60.2% of three land cover types and showed high loadings for major elements (Mg and K) in built-up and green area and Fe in drain side. Top soil pollution index was carried out by using geo-accumulation index and metal pollution index (MPI₆). Concentration of major elements (Ca, Mg, Na, K) in surface soils is derived by parent material, whereas concentration of Fe, Ni, Pb, and Zn were mainly related with anthropogenic sources. Geostatistical methods such as kirging identified hotspot areas of metal contamination by Pb, Ni, and Zn in built-up areas influenced mainly by vehicular emissions and waste disposal. The results stresses that land clearing should be avoided to reduce contamination and management of urban soils.     

Real-Time PCR Detection of Norovirus in Mussels Collected from the Bosphorus in Istanbul,Turkey

Norovirus (NoV) is recognised as one of the most common causes of foodborne infections, and shellfish are a well-documented source of this virus. The presence of NoV in shellfish has not previously been investigated in Turkey, and hence the aim of this study was to determine the frequency of human NoV genogroups I and II in mussels collected from the Bosphorus, Istanbul, Turkey. A total of 320 mussels representing 110 samples originating along the Bosphorus coast were collected from fish distributors. RNA was extracted using the RNeasy Mini Kit and real-time RT–PCR performed using primers specific for NoV genogroup I and II. Amongst the 110 samples, 5 (4.5%) were found to be positive for NoV genogroup II by SYBR Green assay; no genogroup I was detected. A positive signal was obtained by SYBR Green for NoV Genogroup II in mussels collected in October, November and December 2008, and February and July 2009. Only four out of five SYBR Green positive samples could be confirmed by the use of a NoV GII probe-based real-time RT–PCR. The average count and SD of Enterobactericaeae, E. coli and sulphide reductase anaerobic bacteria in PCR positive mussels were 3.56 log ± 0.96 log, 2.32 log ± 0.77 log and 1.70 log ± 0.56 log, respectively. This study shows that NoV Genogroup II is present in mussels collected from the Bosphorus, Istanbul, and may constitute a risk to human health.     

Comparison of phytotoxic effects of bio-synthesised copper oxide nanoparticle and ionic copper on Elodea canadensis

This study aims to investigate the phytotoxic effects of both Punica granatum peel extract directed copper oxide nanoparticles (CuONPs) and copper nitrate on Elodea canadensis. The CuONPs were characterised by UV–visible spectroscopy (UV-Vis), Dynamic Light Scattering (DLS), X-ray Diffraction (XRD), Scanning Electron Microscope (SEM), and Fourier Transform Infrared (FT-IR) Spectroscopy. The ratio of photosynthetic pigments, total soluble protein, malondialdehyde (MDA), catalase (CAT), ascorbate peroxidase (APX), and copper accumulation in the E. canadensis was determined to evaluate the phytotoxicity of the CuONPs and copper nitrate on E. canadensis. The significant improvements were observed in the growth rate of E. canadensis, chlorophyll a and b, carotenoid contents, and total soluble protein in the E. canadensis when it was exposed to the CuONPs. Additionally, CAT and APX activities and MDA contents were enhanced by accumulation of the CuONPs into the E. canadensis. These results suggested that oxidative stress was alleviated, owing to the result of an increase in the antioxidants such as CAT and APX, with an increase in the concentration of the CuONPs. Finally, the findings of this study show that copper nitrate has many negative effects on E. canadensis compared bio-synthesised CuONPs.     

Effects of spacing and post-planting treatments on survival and growth of Fraxinus angustifolia seedlings

This study was conducted at a bottomland hardwood site with heavy textured soil in Akyazi, Turkey to determine the effect of initial spacing (3.0 x 3.0, 3.0 x 2.0, 2.5 x 1.6 and 2.5 x 1.2 m) and post-planting treatments (untreated check, moving, hoeing, disking, and hoeing plus disking) on early survival and growth of Fraxinus angustifolia Vahl. One-year old bare-root seedlings (70 +/- 5 cm in height) were hand-planted in December 2004. Through three years survival was perfect with a rate of 98% in all treatments. Spacing and the interaction between spacing and post-planting treatment did not significantly affect seedling growth through three years. However height and diameter growth increased overtime and differed significantly among post-planting treatments. The hoeing and hoeing plus disking treatments gave the highest growth, and resulted in about 31% increase in diameter and height increment, and in total diameter and height about 20%. These results suggest that post-planting treatments on bottomland sites with heavy textured soil give promising results.     

Heavy metals in water, sediment and tissues of Leuciscus cephalus from a stream in southwestern Turkey

Concentrations of heavy metals (Cd, Cr, Cu, Pb and Zn) were measured in water, bottom sediment and tissues (muscle and gills) of Leuciscus cephalus from the Dipsiz stream in the Yatagan basin (southwestern Turkey), the site of a thermal power plant. Results for levels in water were compared with national and international water quality guidelines, as well as literature values were reported for streams and rivers. Comparisons were made of metal concentrations in water and sediment with those in the muscle and gills of L. cephalus caught from the Dipsiz stream. We found that there was metal accumulation in the gills compared to the muscle. Concentrations of Cd, Pb, Zn and Cr in the gills were higher than that in the muscle; however, Cu levels were higher in muscle than that in gills. Concentrations of heavy metals in L. cephalus muscle were below the legal limits for human consumption, although Cr, Pb and Zn levels in the gills were above the limits in the fish taken from the Dipsiz stream. On the other hand, no correlation was found between metal concentrations in water and sediment or between metal concentrations in water and muscle and gills of L. cephalus. A positive correlation was found between concentrations of Cu and Zn in the sediment and in fish tissue, whereas there was no relationship between other metal concentrations in the sediment and water, and muscle and gills of L. cephalus. As with water, Pb and Cd concentrations in particular were higher in sediment than that in background levels. The results show that the pollutants from the thermal power plant may be a source of these elements.     

Sustainable natural resource management and environmental assessment in the Salt Lake (Tuz Golu) Specially Protected Area

The Salt Lake Specially Protected Area is a unique ecosystem for both agricultural activities and natural life in Turkey. In the present study, an attempt was made to develop a conceptual land use strategy and methodology, taking into account ecological factors for regional development in the Salt Lake Specially Protected Area. A detailed Geographic Information System (GIS) analysis was done to create a comprehensive database including land use, land suitability, and environmental factors (soil, climate, water quality, fertilizing status, and heavy metal and pesticide pollution). The results of the land suitability survey for agricultural use showed that, while 62.6% of the study area soils were classified as best and relatively good, about 15% were classified as problematic and restricted lands, only 22.2% of the study area soils were not suitable for agricultural uses. However, this is not enough to derive maximum benefit with minimum degradation. Therefore, environmental factors and ecological conditions were combined to support this aim and to protect the ecosystem. Excessive irrigation practices, fertilizer and pesticide application, and incorrect management practices all accelerate salinization and degradation. In addition to this, it was found that a multi-layer GIS analysis made it easy to develop a framework for optimum land use and could increase the production yield preserving the environmental conditions. Finally, alternative management and crop patterns were undertaken to sustain this unique ecosystem, considering water, soil, climate, land use characteristics, and to provide guidance for planners or decision makers.     

Bioenergy production from diluted poultry manure and microbial consortium inside Anaerobic Sludge Bed Reactor at sub-mesophilic conditions

In this study, anaerobic treatability of diluted chicken manure (with an influent feed ratio of 1 kg of fresh chicken manure to 6 L of tap water) was investigated in a lab-scale anaerobic sludge bed (ASB) reactor inoculated with granular seed sludge. The ASB reactor was operated at ambient temperature (17–25°C) in order to avoid the need of external heating up to higher operating temperatures (e.g., up to 35°C for mesophilic digestion). Since heat requirement for raising the temperature of incoming feed for digestion is eliminated, energy recovery from anaerobic treatment of chicken manure could be realized with less operating costs. Average biogas production rates were calculated ca. 210 and 242 L per kg of organic matter removed from the ASB reactor at average hydraulic retention times (HRTs) of 13 and 8.6 days, respectively. Moreover, average chemical oxygen demand (COD) removal of ca. 89% was observed with suspended solids removal more than 97% from the effluent of the ASB reactor. Influent ammonia, on the other hand, did not indicate any free ammonia inhibition due to dilution of the raw manure while pH and alkalinity results showed stability during the study. Microbial quantification results indicated that as the number of bacterial community decreased, the amount of Archaea increased through the effective digestion volume of the ASB reactor. Moreover, the number of methanogens displayed an uptrend like archaeal community and a strong correlation (?0.645) was found between methanogenic community and volatile fatty acid (VFA) concentration especially acetate.     

Assessment of the safety of dietary fish oil supplements in terms of content and quality

Environmental Science and Pollution Research - The fatty acid composition of top-selling fish oil dietary supplements in the markets was compared with the content stated on product label, and their...     

Heavy metal contents of organically produced, harvested, and dried fruit samples from Kayseri, Turkey

Organically produced, harvested, and dried fruit samples bought at organic markets in Kayseri, Turkey have been analyzed for their trace element contents. In the determinations, flame atomic absorption spectrometer (FAAS) was used. This pilot study is the first to be performed for organically produced, harvested, and dried fruit samples from Kayseri, Turkey. The copper, iron, manganese, and zinc concentrations were found to be 1.6–15.5, 10.3–144, 23.0–211, and 23.3–91.6 μg/g, respectively. The cobalt, lead, cadmium, chromium, and nickel concentrations in all analyzed organic fruit samples were below the quantification limits of FAAS. SRM 1570A spinach leaves and SRM 1515 apple leaves were used to check the accuracy of the procedure. The results for the dried fruit samples found in this work were compared with the values from some studies from the world. The results found in the presented work may also be useful for future studies about organically produced, harvested, and dried fruit samples.     

Indoor airborne fungal pollution in newborn units in Turkey

Pathogenic and/or opportunistic fungal species are major causes of nosocomial infections, especially in controlled environments where immunocompromised patients are hospitalized. Indoor fungal contamination in hospital air is associated with a wide range of adverse health effects. Regular determination of fungal spore counts in controlled hospital environments may help reduce the risk of fungal infections. Because infants have inchoate immune systems, they are given immunocompromised patient status. The aim of the present study was to evaluate culturable airborne fungi in the air of hospital newborn units in the Thrace, Marmara, Aegean, and Central Anatolia regions of Turkey. A total of 108 air samples were collected seasonally from newborn units in July 2012, October 2012, January 2013, and April 2013 by using an air sampler and dichloran 18% glycerol agar (DG18) as isolation media. We obtained 2593 fungal colonies comprising 370 fungal isolates representing 109 species of 28 genera, which were identified through multi-loci gene sequencing. Penicillium, Aspergillus, Cladosporium, Talaromyces, and Alternaria were the most abundant genera identified (35.14, 25.40, 17.57, 2.70, and 6.22% of the total, respectively).