Bedding and seasonal effects on chemical and bacterial properties of feedlot cattle manure

Nutrients, soluble salts, and pathogenic bacteria in feedlot-pen manure have the potential to cause pollution of the environment. A three-year study (1998-2000) was conducted at a beef cattle (Bos taurus) feedlot in southern Alberta, Canada to determine the effect of bedding material [barley (Hordeum vulgare L.) straw versus wood chips] and season on the chemical and bacterial properties of pen-floor manure. Manure was sampled for chemical content (N, P, soluble salts, electrical conductivity, and pH) and populations of four groups of bacteria (Escherichia coli, total coliforms, and total aerobic heterotrophs at 27 and 39 degrees C). More chemical parameters of manure were significantly (P < or = 0.05) affected by season (SO4, Na, Mg, K, Ca, sodium adsorption ratio [SAR], total C, NO3-N, NH4-N, total P, and available P) than by bedding (K, pH, total C, C to N ratio, NH4-N, and available P). Bedding had no significant (P > 0.05) effect on the four bacterial groups whereas season affected all four groups. Numbers of E. coli and total coliforms (TC) were significantly higher by 1.72 to 2.02 log10 units in the summer than the other three seasons, which was consistent with a strong positive correlation of E. coli and TC with air temperature. The low ratio of bedding to manure in the pens was probably the major cause of the lack of significant bedding effects. Bedding material and seasonal timing of cleaning feedlot pens and land application of manure may be a potential tool to manage nutrients, soluble salts, and pathogens in manure.     

TARGETING NONPOINT SOURCE POLLUTION CONTROL: PHOSPHORUS IN THE MINNESOTA RIVER BASIN1

ABSTRACT: The state of Minnesota seeks to reduce phosphorus loading to the Minnesota River by 40 percent from current levels. Looking at one major watershed in the river basin, we examined the cost effectiveness of targeting versus not targeting specific practices or regions within a watershed for controlling nonpoint phosphorus pollution from agriculture. Integrating biophysical simulation results from current and alternative farming systems with production cost and return estimates enabled us to analyze this policy. Our results indicated it is more cost effective to reduce nonpoint pollution by targeting particular regions or practices in a watershed compared to not targeting. Specifically, producers farming on cropland susceptible to erosion in close proximity to water will appreciably reduce phosphorus nonpoint pollution loading potential by switching from conventional tillage to conservation tillage and by reducing phosphorus fertilization levels to those recommended by the state extension service. Efforts to target those producers in the Minnesota River Basin could reduce potential transaction costs and compensation from “takings” by approximately $50 million (74 percent) over not targeting.     

Confirmation of CVS mosaicism in term placentae and high frequency of intrauterine growth retardation association with confined placental mosaicism

About 2 per cent of specimens from chorionic villus sampling (CVS) analysed either on direct preparation of cytotrophoblast cells or afterculture of mesenchymal stroma reveal confined placental mosaicism (CPM), most commonly involving chromosomal trisomy. A significantly higher rate of prenatal loss (22 per cent) as well as the presence of intrauterine growth retardation (IUGR) has been reported among pregnancies with CPM. To evaluate more precisely the effect of these aneuploid cell lines confined to the placenta on intrauterine fetal growth and fetal survival, we have studied 34 term placentae from pregnancies with CPM diagnosed on CVS and confirmed identical mosaicism in 17 of these placentae. There was a direct correlation between a high number of aneuploid cells present at CVS and a high likelihood of their detection in term placenta. Also, the proportion of aneuploid cells in the mosaic term placentae correlated with that observed in CVS specimens. Among 17 gestations with confirmed CPM at delivery, there were six cases of IUGR identified, five in liveborns and one associated with intrauterine death.     

Mathematical problem definition for ecological restoration planning

Ecological restoration is an increasingly important tool for managing and improving highly degraded or altered environments. Faced with a large number of sites or ecosystems to restore, and a diverse array of restoration approaches, investments in ecological restoration must be prioritized. Nevertheless, there are relatively few examples of the systematic prioritization of restoration actions. The development of a general theory for ecological restoration that is sufficiently sophisticated and robust to account for the inherent complexity of restoration planning, and yet is flexible and adaptable to ensure applicability to a diverse array of restoration problems is needed. In this paper we draw on principles from systematic conservation planning to explicitly formulate the ‘restoration prioritization problem’. We develop a generalized theory for static and dynamic restoration planning problems, and illustrate how the basic problem formulation can be expanded to allow for many factors characteristic of restoration problems, including spatial dependencies, the possibility of restoration failure, and the choice of multiple restoration techniques. We illustrate the applicability of our generic problem definition by applying it to a case study - restoration prioritization on The Irvine Ranch Natural Landmark in Southern California. Through this case study we illustrate how the definition of the general restoration problem can be extended to account for the specific constraints and considerations of an on-the-ground restoration problem.     

Predicting fish diet composition using a bagged classification tree approach: a case study using yellowfin tuna (<Emphasis Type="Italic">Thunnus albacares</Emphasis>)

We provided a classification tree modeling framework for investigating complex feeding relationships and illustrated the method using stomach contents data for yellowfin tuna (Thunnus albacares) collected by longline fishing gear deployed off eastern Australia between 1992 and 2006. The non-parametric method is both exploratory and predictive, can be applied to varying size datasets and therefore is not restricted to a minimum sample size. The method uses a bootstrap approach to provide standard errors of predicted prey proportions, variable importance measures to highlight important variables and partial dependence plots to explore the relationships between explanatory variables and predicted prey composition. Our results supported previous studies of yellowfin tuna feeding ecology in the region. However, the method provided a number of novel insights. For example, significant differences were noted in the prey of yellowfin tuna sampled north of 20°S in summer where oligotrophic waters dominate. The analysis also identified that sea-surface temperature, latitude and yellowfin size were the most important variables associated with dietary differences. The methodology is appropriate for delineating ecosystem-level trophic dynamics, as it can easily incorporate large datasets comprising multiple predators to explore trophic interactions among members of a community. Broad-scale relationships among explanatory variables (environmental, biological, temporal and spatial) and prey composition elucidated by this method then serve to focus and lend validity to subsequent fine-scale analyses of important parameters using standard diet methods and chemical tracers such as stable isotopes.     

Global potential net primary production predicted from vegetation class, precipitation, and temperature

Net primary production (NPP), the difference between CO2 fixed by photosynthesis and CO2 lost to autotrophic respiration, is one of the most important components of the carbon cycle. Our goal was to develop a simple regression model to estimate global NPP using climate and land cover data. Approximately 5600 global data points with observed mean annual NPP, land cover class, precipitation, and temperature were compiled. Precipitation was better correlated with NPP than temperature, and it explained much more of the variability in mean annual NPP for grass- or shrub-dominated systems (r2 = 0.68) than for tree-dominated systems (r2 = 0.39). For a given precipitation level, tree-dominated systems had significantly higher NPP (approximately 100-150 g C m(-2) yr(-1)) than non-tree-dominated systems. Consequently, previous empirical models developed to predict NPP based on precipitation and temperature (e.g., the Miami model) tended to overestimate NPP for non-tree-dominated systems. Our new model developed at the National Center for Ecological Analysis and Synthesis (the NCEAS model) predicts NPP for tree-dominated systems based on precipitation and temperature; but for non-tree-dominated systems NPP is solely a function of precipitation because including a temperature function increased model error for these systems. Lower NPP in non-tree-dominated systems is likely related to decreased water and nutrient use efficiency and higher nutrient loss rates from more frequent fire disturbances. Late 20th century aboveground and total NPP for global potential native vegetation using the NCEAS model are estimated to be approximately 28 Pg and approximately 46 Pg C/yr, respectively. The NCEAS model estimated an approximately 13% increase in global total NPP for potential vegetation from 1901 to 2000 based on changing precipitation and temperature patterns.     

Headwater riparian forest-floor invertebrate communities associated with alternative forest management practices.

Headwater streams and their riparian zones are a common, yet poorly understood, component of Pacific Northwest, USA, landscapes. We describe the ecological importance of headwater stream riparian zones as habitat for forest-floor invertebrate communities and assess how alternative management strategies for riparian zones may impact these communities. We compared community composition of forest-floor invertebrates at increasing distances along trans-riparian (stream edge to upslope) transects in mature forests, clearcuts, and riparian buffers of approximately 30-m width with upslope clearcuts. Invertebrates were collected using pitfall traps in five replicate blocks of three treatments each in the Willamette National Forest, Oregon, USA. We measured microclimate and microhabitat variables at pitfall locations. Despite strong elevation and block effects on community composition, community analyses revealed a distinct "riparian" invertebrate community within 1 m of the stream edge in mature forest treatments, which was strongly related to cool, humid microclimate conditions. Invertebrate community composition in buffer treatments was far more similar to that of mature forests than to clearcuts; a pattern mirrored by microclimate. These results suggest that, within our study sites, forest-floor invertebrate distributions are strongly associated with microclimate and that riparian buffers of approximately 30-m width do provide habitat for many riparian and forest species. Riparian reserves may serve as effective forest refugia and/or dispersal corridors for invertebrates and other taxa, and their incorporation into watershed management plans likely will contribute to meeting persistence and connectivity objectives.     

Light-enhanced growth of the ascidian Didemnum molle/Prochloron sp. symbiosis

To obtain a direct measurement of the importance of Prochloron sp. to the ascidian Didemnum molle, ascidian colonies from Lizard Island Lagoon, Great Barrier Reef, were grown for 9 d at 0, 10, 40 and 100% sunlight in situ using unidirectional flow chambers. Growth (wet weight) was enhanced up to 40% of full sunlight, at which point growth appears to have been light-saturated. Colonies in 10 and 40% sunlight responded by (1) climbing up the sides of the growth chambers, and (2) flattening out to a more encrusting morphology; also (3) the chlorophyll content of three colonies in zero sunlight decreased by >80%, yet the ascidians remained healthy and did not lose weight. These data show that although the symbiosis may not be obligatory for D. molle, the ascidian's growth is enhanced by Prochloron sp., and the morphology of the ascidian colony is affected by its photobiology.Contribution No. 344 of the Australian Institute of Marine ScienceCommunicated by G. F. Humphrey, Sydney     

Quantifying ultraviolet radiation mortality risk in bluegill larvae: effects of nest location.

Ultraviolet (UV) radiation (280-400 nm) is an increasing threat to aquatic organisms due to stratospheric ozone depletion and reductions in concentrations of dissolved organic carbon. Because fish are most vulnerable to UV during the egg and larval stages, parental spawning site selection can strongly influence mortality risk. We examined the role of nest location in determining UV-induced mortality risk for bluegill (Lepomis macrochirus) in Lake Giles, Pennsylvania, USA. In a series of five short-term incubation experiments, we found that survival of yolk sac larvae across the range of depths at which bluegill spawn was significantly lower in the presence of ambient-UV levels relative to larvae that were shielded from UV radiation. In addition, survival decreased as a function of cumulative UV exposure, as measured by the number of cyclobutane pyrimidine dimers per megabase DNA in DNA dosimeters. Although UV had the potential to significantly reduce larval survival, DNA dosimeters placed in bluegill nests concurrently with incubation experiments indicated that most nests were exposed to relatively low levels of UV. Only 19% of nests had predicted UV-induced mortality greater than 25%. Consequently, current levels of UV may be an important mortality source at the level of individual nests, but not at the population level. One reason for the weak predicted effect of UV on bluegill survival is that many nests were located at depths by which much of the incident UV had been attenuated. In addition, many of the shallower nests were protected by overhanging trees or other submerged structures. It is important to note that Lake Giles is highly transparent and therefore not representative of all lakes in which bluegill are found. Nevertheless, Lake Giles is a natural system and may be representative of north temperate lakes in the future.