Matching and mismatching stable isotope (δ13C and δ15N) ratios in fin and muscle tissue among fish species: a critical review

Using non-lethal tissue sampling for stable isotope analysis has become standard in many fields, but not for fishes, despite being desirable when species are rare or protected, when repeated sampling of individuals is required or where removal may bias other analyses. Here, we examine the utility of fish dorsal fin membrane as an alternative to muscle for analyzing δ¹³C and δ¹⁵N ratios in two reef fish species (blue cod Parapercis colias and spotty Notolabrus celidotus) that have differing feeding modes. Both species exhibited evidence of size-based feeding from fin δ¹⁵N values, but not from muscle. Blue cod fin δ¹⁵N increased steadily throughout the sampled size range (213–412 mm fork length), whereas spotty exhibited a distinct ontogenetic diet shift at approximately 120–140 mm fork length after which size-based feeding did not occur. Fin membrane was higher than muscle in δ¹³C in both species and in δ¹⁵N for blue cod, but fin δ¹⁵N was lower than muscle in spotty. The δ¹³C and δ¹⁵N fin–muscle offsets were constant in spotty regardless of size, while in blue cod, δ¹³C was constant with fish size, but δ¹⁵N offsets increased with increasing fish size. Non-lethal sampling utilizing fin tissue can be employed to estimate stable isotope values of muscle in fishes, but it is necessary to assess relationships among tissues and the effects of fish size on isotope values a priori for each species studied. Our data indicated that fin membrane may be a more sensitive tissue than muscle for detecting size-based feeding in some fish species using stable isotopes. A critical literature review revealed inconsistencies in tissue types tested, little understanding of tissue-specific trophic shift or turnover rates, and pseudo-replicated analyses leading to erroneous postulating of 1:1 relationships between tissues.     

Models relating individual and population response to contaminants

Even when present at sub‐lethal levels, toxic compounds have an effect on the dynamics of a population, expressed through altered growth and reproduction rates. We explore some of the potential effects of toxicants on populations, using a simple model that considers a generic toxicant and populations of two species, a primary producer, and a consumer living under food‐limited conditions. The toxicant is assumed to affect the consumers only, and it may enter them either directly from the environment or via their food, the latter opening the possibility of biomagnification. The initial response of the consumer to introduction of a toxicant is invariably a decline in its fecundity and density. However, in the longer term, the equilibrium densities of both producer and consumer may increase or decrease, depending on parameter values and ambient toxicant levels. The surprising case of an increased equilibrium in response to the toxicant occurs if, in the absence of toxicant, the consumers held the producers at a very low level, analogous to ‘overfishing’ in fishery studies. If the toxicant enters the consumer via food, multiple, non‐trivial equilibria are possible. The complex, but interpretable, dynamics exhibited by these simple models will be used to guide studies with more realistic models, for whose development this study forms a prelude.     

The STRATEGY project: decision tools to aid sustainable restoration and long-term management of contaminated agricultural ecosystems

The STRATEGY project (Sustainable Restoration and Long-Term Management of Contaminated Rural, Urban and Industrial Ecosystems) aimed to provide a holistic decision framework for the selection of optimal restoration strategies for the long-term sustainable management of contaminated areas in Western Europe. A critical evaluation was carried out of countermeasures and waste disposal options, from which compendia of state-of-the-art restoration methods were compiled. A decision support system capable of optimising spatially varying restoration strategies, that considered the level of averted dose, costs (including those of waste disposal) and environmental side effects was developed. Appropriate methods of estimating indirect costs associated with side effects and of communicating with stakeholders were identified. The importance of stakeholder consultation at a local level and of ensuring that any response is site and scenario specific were emphasised. A value matrix approach was suggested as a method of addressing social and ethical issues within the decision-making process, and was designed to be compatible with both the countermeasure compendia and the decision support system. The applicability and usefulness of STRATEGY outputs for food production systems in the medium to long term is assessed.     

Isolation of Salmonella typhimurium Tn5 mutants defective for survival on egg shell surface using transposon footprinting

The objective of this study was to screen the genome of Salmonella typhimurium for genes potentially required for survival on egg shell surfaces using a novel transposon footprinting method based on a previously developed Tn5 mutagenesis technique. Since the amplified DNA fragment length should usually be unique for each mutant, the polymerase chain reaction products separated on an agarose gel generate a transposon footprint with each band in the footprint representing the corresponding Tn5 mutant. By comparing the footprints from the pools of S. typhimurium Tn5 mutants before and after inoculation on egg shell surfaces, Tn5 mutants not recovered after selection were rapidly identified for potential isolation and genetic analysis.     

Ten Key Questions About the Management of Water in the Yellow River Basin

Water is scarce in many regions of the world, clean water is difficult to find in most developing countries, there are conflicts between irrigation needs and urban demands, and there is wide debate over appropriate means of resolving these problems. Similarly, in China, there is limited understanding of the ways in which people, groups, and institutions contribute to, are affected by, and respond to changes in water quantity and quality. We use the example of the Yellow River basin to argue that these social, managerial, and policy dimensions of the present water problems are significant and overshadow the physical ones. Despite this, they receive relatively little attention in the research agenda, particularly of the lead agencies in the management of the Yellow River basin. To this end, we ask ten research questions needed to address the policy needs of water management in the basin, split into two groups of five. The first five relate to the importance of water in this basin and the changes that have affected water problems and will continue to do so. The second five questions represent an attempt to explore possible solutions to these problems.     

Carcass Provisioning to Support Scavengers: Evaluating a Controversial Nature Conservation Practice

A number of scavenger species have suffered population declines across Europe. In attempts to reverse their decline, some land and wildlife managers have adopted the practice of leaving or placing out carcasses of wild or domestic herbivores to provide a source of carrion. However, this can be a controversial practice, with as yet unclear outcomes for many target species and the ecosystems they are part of. Here we bring out the key aspects of this increasingly common conservation practice illustrated using three contrasting cases studies. We show that the provision of carcasses is often motivated by a desire to benefit charismatic species or to facilitate nutrient cycling throughout an ecosystem. Evidence for the effectiveness of this practice in achieving these objectives, however, is mostly lacking, with ecologists studying “easier” species groups such as beetles and therefore not providing relevant insights. Moreover, conflicts between environmental policies that carcass provisioning is aimed at and other social and economic objectives do occur but these projects are often designed without taking into account this broader context. We conclude that expecting carcasses to simply be “good for biodiversity” may be too naïve a view. A greater knowledge of the impact of carcass provisioning and placement on ecosystems and society at large is required before it can become a more effective conservation tool at a wider scale.