The BIOTA Biodiversity Observatories in Africa—a standardized framework for large-scale environmental monitoring

The international, interdisciplinary biodiversity research project BIOTA AFRICA initiated a standardized biodiversity monitoring network along climatic gradients across the African continent. Due to an identified lack of adequate monitoring designs, BIOTA AFRICA developed and implemented the standardized BIOTA Biodiversity Observatories, that meet the following criteria (a) enable long-term monitoring of biodiversity, potential driving factors, and relevant indicators with adequate spatial and temporal resolution, (b) facilitate comparability of data generated within different ecosystems, (c) allow integration of many disciplines, (d) allow spatial up-scaling, and (e) be applicable within a network approach. A BIOTA Observatory encompasses an area of 1?km² and is subdivided into 100 1-ha plots. For meeting the needs of sampling of different organism groups, the hectare plot is again subdivided into standardized subplots, whose sizes follow a geometric series. To allow for different sampling intensities but at the same time to characterize the whole square kilometer, the number of hectare plots to be sampled depends on the requirements of the respective discipline. A hierarchical ranking of the hectare plots ensures that all disciplines monitor as many hectare plots jointly as possible. The BIOTA Observatory design assures repeated, multidisciplinary standardized inventories of biodiversity and its environmental drivers, including options for spatial up- and downscaling and different sampling intensities. BIOTA Observatories have been installed along climatic and landscape gradients in Morocco, West Africa, and southern Africa. In regions with varying land use, several BIOTA Observatories are situated close to each other to analyze management effects.     

Method optimization to measure polybrominated diphenyl ether (PBDE) concentrations in soils of Bratislava, Slovakia

We modified an analytical method to determine polybrominated diphenyl ethers (PBDEs) in urban soils of Bratislava (Slovakia). Gel permeation chromatography (GPC) introduced as a clean-up step for soil extracts substantially reduced matrix enhancements when PBDEs were measured with gas chromatography-negative chemical ionization-mass spectrometry (GC-NCI-MS). The resulting method proved to be accurate, precise, and showed low detection limits. The sum of 15 PBDE concentrations in surface horizons of Bratislava soils ranged from 87 to 627 pg g⁻¹. PBDE concentrations were mostly higher in surface than deeper horizons probably because of atmospheric deposition and lack of substantial vertical transport. Lower brominated PBDEs undergo more soil-atmosphere exchanges or are more scavenged and transferred with litter fall to the soil organic matter than higher brominated ones as suggested by the correlation between lower brominated PBDEs and soil organic C (C_org) concentrations.     

Von Warzen und Viren

The discovery that papillomaviruses are correlated with various types of cancer in man has led to increased interest in this virus group. A more detailed study of these viruses has only become possible with the introduction of recombinant DNA techniques. The most thoroughly studied representative, the bovine papillomavirus type 1, has now itself become a tool in genetic engineering.     

Der Einsatz von Pflanzentests bei der Sedimentbewertung

Up to now, sediment studies have mainly used standardized aquatic bioassays with organisms of the three trophic levels. Among these, algae are the only representatives of the entire plant kingdom. Bioassays with higher plants have hardly been used for the assessment of sediments. The aim of the present study is to demonstrate that the use of higher plants in biotests for analyses of anthropogenically contaminated sediments yields valuable results, which may be included in a concept for the integrated assessment of waters. The contamination by environmental chemicals was determined in the River Elbe by means of samples taken at the Fahlberg-List industrial site at Magdeburg in combination with studies in a reference area on the Müritz-Elde Waterway (Eldenburger Kanal). Sediment extracts and pore waters were tested with the aquatic lemna test. For comparison, first sediment contact tests withLemna minor were tried out. The whole extract of the sediment from Fahlberg-List Magdeburg and one fraction F5 caused distinct damages of the plants. Obviously, the phytotoxic substances of the whole extract are preferentially concentrated in the highly polar fraction F5. A comparison with chemical analytical data proved that the whole fraction F0 and the fraction F5 were heavily contaminated with chemicals. Assays with pore water from this sediment and with the whole sediment also caused a strong inhibition of growth. These results confirm the high contamination of the sediment from Magdeburg. The tests with the reference sediment suggested only a moderate toxic contamination. The results of this study prove that the selected aquatic plant,Lemna minor, is basically able to indicate contamination. In the aquatic test of the sediment extracts, it showed weak, but very selective, responses to certain classes of contaminants. Fractionating of the sample and subsequent chemical analysis combined with toxicity tests allow to narrow down the groups of substances causing toxic effects. This toxicity was confirmed by analyses of the pore waters and whole sediment samples. Together with other toxicity tests (e.g. standardized bioassays) and combined with biological benthos examinations, an overall judgment can be given for the integrated assessment of waters.     

RNA interference: from an ancient mechanism to a state of the art therapeutic application?

Now that the sequencing of many genomes has been completed, the basic challenges are finding the genes and predicting their functions. Up until now, a large information gap has existed between the knowledge of genome sequence and our knowledge of protein function. The assessment of gene function may be performed using the tools of reverse genetics, including knock-out mice, antisense oligomers, aptamers, and ribozymes. These approaches have been superseded by RNA interference (RNAi), which exhibits much more potency for the investigation of protein function than the techniques listed above. As already known some years ago, RNAi is based on an ancient anti-viral defense mechanism in lower eukaryotes. It is induced by double-stranded RNA and its processing to 21–23 nt small interfering RNAs (siRNAs), which cause the degradation of homologous endogenous mRNA. The way RNAi works has still to be determined, but it already serves as a first-choice approach to generate loss-of-function phenotypes among a broad variety of eukaryotic species, such as nematodes, flies, plants, fungi and mammals. RNAi also represents an extremely powerful tool, becoming a therapeutic approach to curing infectious diseases originated by viral or parasitic invasion. In this review we present the current view of how RNAi works in different eukaryotic species and its high potential for functional genomics and in rational drug design.