The continuing conundrum of the LEA proteins

Research into late embryogenesis abundant (LEA) proteins has been ongoing for more than 20 years but, although there is a strong association of LEA proteins with abiotic stress tolerance particularly dehydration and cold stress, for most of that time, their function has been entirely obscure. After their initial discovery in plant seeds, three major groups (numbered 1, 2 and 3) of LEA proteins have been described in a range of different plants and plant tissues. Homologues of groups 1 and 3 proteins have also been found in bacteria and in certain invertebrates. In this review, we present some new data, survey the biochemistry, biophysics and bioinformatics of the LEA proteins and highlight several possible functions. These include roles as antioxidants and as membrane and protein stabilisers during water stress, either by direct interaction or by acting as molecular shields. Along with other hydrophilic proteins and compatible solutes, LEA proteins might also serve as “space fillers” to prevent cellular collapse at low water activities. This multifunctional capacity of the LEA proteins is probably attributable in part to their structural plasticity, as they are largely lacking in secondary structure in the fully hydrated state, but can become more folded during water stress and/or through association with membrane surfaces. The challenge now facing researchers investigating these enigmatic proteins is to make sense of the various in vitro defined functions in the living cell: Are the LEA proteins truly multi-talented, or are they still just misunderstood?     

A Comprehensive Python Toolkit for Accessing High‐Throughput Computing to Support Large Hydrologic Modeling Tasks

The National Flood Interoperability Experiment (NFIE) was an undertaking that initiated a transformation in national hydrologic forecasting by providing streamflow forecasts at high spatial resolution over the whole country. This type of large‐scale, high‐resolution hydrologic modeling requires flexible and scalable tools to handle the resulting computational loads. While high‐throughput computing (HTC) and cloud computing provide an ideal resource for large‐scale modeling because they are cost‐effective and highly scalable, nevertheless, using these tools requires specialized training that is not always common for hydrologists and engineers. In an effort to facilitate the use of HTC resources the National Science Foundation (NSF) funded project, CI‐WATER, has developed a set of Python tools that can automate the tasks of provisioning and configuring an HTC environment in the cloud, and creating and submitting jobs to that environment. These tools are packaged into two Python libraries: CondorPy and TethysCluster. Together these libraries provide a comprehensive toolkit for accessing HTC to support hydrologic modeling. Two use cases are described to demonstrate the use of the toolkit, including a web app that was used to support the NFIE national‐scale modeling.     

Interlaboratory evaluation of trace element determination in workplace air filter samples by inductively coupled plasma mass spectrometry

Inductively coupled plasma mass spectrometry (ICP-MS) is becoming more widely used for trace elemental analysis in the occupational hygiene field, and consequently new ICP-MS international standard procedures have been promulgated by ASTM International and ISO. However, there is a dearth of interlaboratory performance data for this analytical methodology. In an effort to fill this data void, an interlaboratory evaluation of ICP-MS for determining trace elements in workplace air samples was conducted, towards fulfillment of method validation requirements for international voluntary consensus standard test methods. The study was performed in accordance with applicable statistical procedures for investigating interlaboratory precision. The evaluation was carried out using certified 37-mm diameter mixed-cellulose ester (MCE) filters that were fortified with 21 elements of concern in occupational hygiene. Elements were spiked at levels ranging from 0.025 to 10 μg filter(-1), with three different filter loadings denoted "Low", "Medium" and "High". Participating laboratories were recruited from a pool of over fifty invitees; ultimately twenty laboratories from Europe, North America and Asia submitted results. Triplicates of each certified filter with elemental contents at three different levels, plus media blanks spiked with reagent, were conveyed to each volunteer laboratory. Each participant was also provided a copy of the test method which each participant was asked to follow; spiking levels were unknown to the participants. The laboratories were requested to prepare the filters by one of three sample preparation procedures, i.e., hotplate digestion, microwave digestion or hot block extraction, which were described in the test method. Participants were then asked to analyze aliquots of the prepared samples by ICP-MS, and to report their data in units of μg filter(-1). Most interlaboratory precision estimates were acceptable for medium- and high-level spikes (RSD <25%), but generally yielded greater uncertainties than were anticipated at the outset of the study.     

Greenhouse Gas Dynamics of Municipal Solid Waste Alternatives

ABSTRACT

Previous greenhouse gas studies comparing landfilling with combustion of municipal solid waste (MSW) are limited to examinations of the emissions weighted by their relative radiative activity. This paper adds another dimension by analyzing the atmospheric response to these emissions. The heart of the analysis is a time-dependent model using a perturbation analysis of the IS92a results of the Intergovernmental Panel on Climate Change (IPCC). Using as inputs the emissions from the two technologies, the model calculates atmospheric concentration histories. Scenarios for a landfill and a combustor envision each accepting 1000 Mg refuse/day for a 30-year operating period followed by a 70-year postclosure period. The baseline scenario examines the basic greenhouse impact of each technology. The other scenario adds active gas collection at the landfill and energy offset credits for avoided power plant carbon emissions. For both scenarios, CH₄ and trace gases from the landfill persist in the atmosphere, and they are relatively potent at forcing IR heating. The combination of these features place the landfill much higher than previously expected on the greenhouse impact scale. For the baseline scenario, the time-integrated radiative forcing from landfilling is 115 times that of combustion, and this ratio is 45 for the second scenario.     

Infrared Photography as an Air Pollution Surveillance Instrument

Remote sensing is an extremely new science which developed from World War II technology. At that time, infrared sensitive film (false color) was used to detect such things as troop movements and camouflaged war materials. In essence, the film displayed a color contrast between the artificial and organic vegetation.     

The wind speed dependence of the concentrations of airborne particulate matter and NOx

The wind speed dependence of concentrations of PM₁₀, chloride, sulphate, nitrate, organic carbon, elemental carbon, particle number and NO_x has been determined at three separate sites, Marylebone Road (kerbside), North Kensington (urban background) and Harwell (rural). The data are best described by a general dilution term multiplied by up to three separate source-related terms which we interpret as representing long-range transport sources, discrete local (including area) sources and marine sources respectively. Using this approach, the various particulate metrics can be quantitatively disaggregated according to the contributions of the three source types. The behaviour of nitrate is anomalous, probably due to an influence of wind speed upon the dissociation of ammonium nitrate.     

Functional groups of marine ciliated protozoa and their relationships to water quality

Ciliated protozoa (ciliates) play important ecological roles in coastal waters, especially regarding their interaction with environmental parameters. In order to increase our knowledge and understanding on the functional structure of ciliate communities and their relationships to environmental conditions in marine ecosystems, a 12-month study was carried out in a semi-enclosed bay in northern China. Samples were collected biweekly at five sampling stations with differing levels of pollution/eutrophication, giving a total of 120 samples. Thirteen functional groups of ciliates (A–M) were defined based on their specific spatio-temporal distribution and relationships to physico-chemical parameters. Six of these groups (H–M) were the primary contributors to the ciliate communities in the polluted/eutrophic areas, whereas the other seven groups (A–G) dominated the communities in less polluted areas. Six groups (A, D, G, H, I and K) dominated during the warm seasons (summer and autumn), with the other seven (B, C, E, F, J, L and M) dominating in the cold seasons (spring and winter). Of these, groups B (mainly aloricate ciliates), I (aloricate ciliates) and L (mainly loricate tintinnids) were the primary contributors to the communities. It was also shown that aloricate ciliates and tintinnids represented different roles in structuring and functioning of the communities. The results suggest that the ciliate communities may be constructed by several functional groups in response to the environmental conditions. Thus, we conclude that these functional groups might be potentially useful bioindicators for bioassessment and conservation in marine habitats.     

A comparison of mesh-adaptive LES with wind tunnel data for flow past buildings: Mean flows and velocity fluctuations

In this paper we address two important aspects of micro-scale urban airflow model evaluation: (a) the identification of key flow features as dictated by the physics of the problem and as captured by the simulations, and (b) the comparison of important model output parameters (mean flows and fluctuations) with experimental data. A series of mesh-adaptive large eddy simulations (LES) was carried out for the study of air flows within two intersecting street canyons with varying building configurations. The novelty of the approach lies in the combination of LES with mesh adaptivity, which allows a variable-filter length and the implementation of an anisotropic eddy-viscosity model. Both coarse and fine-mesh simulations were carried out, using single and parallel-processor systems respectively. The simulations showed clearly that the expected flow patterns such as the street canyon recirculation and the street-mouth vortices, as well as the exchange of air flow at the street intersections, can readily be captured by the mesh-adaptive LES.In addition, the detailed comparisons of mean flows and fluctuations of the resolved velocity field with the measured data showed that the simulation results agreed well with the patterns and trends of the wind tunnel measurements. In most cases the finer-mesh simulations improved considerably the accuracy of the mean flows, especially for the symmetrical configuration. The improvement in the predicted fluctuations was less obvious, with several detector locations underpredicting the measured values, although the overall comparison was also satisfactory. The typical errors for the mean flows for all three building configurations were less than 30%, whilst for the velocity fluctuations less that 40%. Both the simulated means flows and turbulence levels were generally more accurate in the streets parallel to the wind (streamwise direction) than in the streets normal to the wind.