Molecular phylogeny and DNA barcoding of tropical eastern Pacific shallow-water gorgonian octocorals

The octocoral fauna inhabiting the shallow waters (<50 m) of the eastern Pacific has been the subject of renewed interest, and the taxonomy of the most important genera in the region has been reviewed and clarified. Many new species have been described, significantly increasing the known biological diversity of the region. Despite their importance as potential sister-groups of Caribbean octocorals, the phylogenetic relationships of eastern Pacific octocorals remain poorly studied. Here, using partial mitochondrial MutS and igr1-COI sequences, we provide a phylogenetic assessment of a broad sample of eastern Pacific shallow-water octocorals and investigate their phylogenetic relationships with Caribbean gorgonians. We corroborate the monophyly of Pacifigorgia, Leptogorgia and Eugorgia and provide evidence of a close relationship between Swiftia and Psammogorgia, currently placed in Plexauridae. In addition, the phylogenies obtained here provide insights into the historical biogeography and phylogenetic diversity of the eastern Pacific octocoral assemblages and on character evolution among this diverse faunal assemblage. Finally, we evaluate the classification power of DNA barcoding for identifying species of shallow-water eastern Pacific octocorals and assess the use of a nuclear intron (SRP54) to supplement traditional mitochondrial barcodes in this group of organisms.     

Protected species use of a coastal marine migratory corridor connecting marine protected areas

The establishment of protected corridors linking the breeding and foraging grounds of many migratory species remains deficient, particularly in the world’s oceans. For example, Australia has recently established a network of Commonwealth Marine Reserves, supplementing existing State reserves, to protect a wide range of resident and migratory marine species; however, the routes used by mobile species to access these sites are often unknown. The flatback marine turtle (Natator depressus) is endemic to the continental shelf of Australia, yet information is not available about how this species uses the marine area. We used a geospatial approach to delineate a coastal corridor from 73 adult female flatback postnesting migratory tracks from four rookeries along the north-west coast of Australia. A core corridor of 1,150 km length and 30,800 km² area was defined, of which 52 % fell within 11 reserves, leaving 48 % (of equivalent size to several Commonwealth Reserves) of the corridor outside of the reserve network. Despite limited data being available for other marine wildlife in this region, humpback whale migratory tracks overlapped with 96 % of the core corridor, while the tracks of three other species overlapped by 5–10 % (blue whales, olive ridley turtles, whale sharks). The overlap in the distribution ranges of at least 20 other marine vertebrates (dugong, cetaceans, marine turtles, sea snakes, crocodiles, sharks) with the corridor also imply potential use. In conclusion, this study provides valuable information towards proposing new locations requiring protection, as well as identifying high-priority network linkages between existing marine protected areas.     

Benefits of memory for the evolution of tag-based cooperation in structured populations

We study the effects of working memory capacity and network rewiring probability on the evolution of cooperation in the standard and modified versions of an agent-based model of tag-mediated altruism. In our evolutionary model, computational agents populate a large complex network, engage into multiplayer Prisoner’s Dilemma-like interactions, and reproduce sexually. Agents carry discernible phenotypic traits subject to mutation, memorize their own experiences, and employ different strategies when interacting with different types of co-players. Choices made are selected from a pool of two conditional and two unconditional strategies, depending on the available memory contents and phenotypic similarity among interactors. For the dominating strategy in our standard model version, we found a strong dependence of cooperation on network structure and a weak one on memory, whereas in the modified version, the structural effect was weaker than that of memory. Most importantly, we found that the previously reported decline of cooperation in memory-based models, typically observed at a high memory capacity, is now prevented with the help of tags. This suggests that the evolutionary advantages of memory capacity limits may be far more complex than previously assumed. For much smaller systems, we observed a quasi-symmetric alternation of the two winning groups of strategists. This result provides an example of ingroup biased interactions that are characterized by bursts of intra-tag cooperation interspersed with periods of unconditional transient altruism. Such switches of strategies may represent a boosting mechanism necessary for the emergence and stability of global altruism in its early evolutionary stages.     

Mineralogical variables that control the antibacterial effectiveness of a natural clay deposit

As antibiotic-resistant bacterial strains emerge and pose increased global health risks, new antibacterial agents are needed as alternatives to conventional antimicrobials. Naturally occurring antibacterial clays have been identified which are effective in killing antibiotic-resistant bacteria. This study examines a hydrothermally formed antibacterial clay deposit near Crater Lake, OR (USA). Our hypothesis is that antibacterial clays buffer pH and Eh conditions to dissolve unstable mineral phases containing transition metals (primarily Fe²⁺), while smectite interlayers serve as reservoirs for time release of bactericidal components. Model pathogens (Escherichia coli ATCC 25922 and Staphylococcus epidermidis ATCC 14990) were incubated with clays from different alteration zones of the hydrothermal deposit. In vitro antibacterial susceptibility testing showed that reduced mineral zones were bactericidal, while more oxidized zones had variable antibacterial effect. TEM images showed no indication of cell lysis. Cytoplasmic condensation and cell wall accumulations of <100 nm particles were seen within both bacterial populations. Electron energy loss analysis indicates precipitation of intracellular Fe³⁺-oxide nanoparticles (<10 nm) in E. coli after 24 h. Clay minerals and pyrite buffer aqueous solutions to pH 2.5–3.1, Eh > 630 mV and contain elevated level (mM) of soluble Fe (Fe²⁺ and Fe³⁺) and Al³⁺. Our interpretation is that rapid uptake of Fe²⁺ impairs bacterial metabolism by flooding the cell with excess Fe²⁺ and overwhelming iron storage proteins. As the intracellular Fe²⁺ oxidizes, it produces reactive oxygen species that damage biomolecules and precipitates Fe-oxides. The ability of antibacterial clays to buffer pH and Eh in chronic non-healing wounds to conditions of healthy skin appears key to their healing potential and viability as an alternative to conventional antibiotics.     

Amphibian myiasis. Blowfly larvae (Lucilia bufonivora,Diptera: Calliphoridae) coping with the poisonous skin secretion of the common toad (Bufo bufo)

The blowfly Lucilia bufonivora shows high host specificity for toads despite the host’s toxic skin secretion, which consists mainly of bufadienolides. These toxins are effective blockers of the Na⁺, K⁺-ATPase, an enzyme that is essential for many physiological processes in animals. Whereas common toad (Bufo bufo) toxins were identified in the larvae of the fly, few toxins were found in the pupae and empty puparia as trace amounts, while adult flies were entirely free of these toxic compounds. Similar results were obtained when larvae of generalist necrophagous blowflies (L. sericata, Calliphora vicina) fed on toad carcasses. Analysis of the Na⁺, K⁺-ATPase gene revealed no amino acid substitution at positions known to mediate resistance to bufadienolides in other systems. Alternative mechanisms of resistance such as efficient excretion of the compounds may enable the flies to use this poisonous food source.     

A polyiodide with regular I 4 2− chains: Tl6PbI10

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