Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)

Quantification of feeding rates and selectivity of zooplankton is vital for understanding the mechanisms structuring marine ecosystems. However, methodological limitations have made many of these studies difficult. Recently, molecular based methods have demonstrated that DNA from prey species can be used to identify zooplankton gut contents, and further, quantitative gut content estimates by quantitative PCR (qPCR) assays targeted to the 18S rRNA gene have been used to estimate feeding rates in appendicularians and copepods. However, while standard single primer based qPCR assays were quantitative for the filter feeding appendicularian Oikopleura dioica, feeding rates were consistently underestimated in the copepod Calanus finmarchicus. In this study, we test the hypothesis that prey DNA is rapidly digested after ingestion by copepods and describe a qPCR-based assay, differential length amplification qPCR (dla-qPCR), to account for DNA digestion. The assay utilizes multiple primer sets that amplify different sized fragments of the prey 18S rRNA gene and, based on the differential amplification of these fragments, the degree of digestion is estimated and corrected for. Application of this approach to C. finmarchicus fed Rhodomonas marina significantly improved quantitative feeding estimates compared to standard qPCR. The development of dla-qPCR represents a significant advancement towards a quantitative method for assessing in situ copepod feeding rates without involving cultivation-based manipulation.     

Eco-hydrological modelling in a highly regulated lowland catchment to find measures for improving water quality

Water quality modelling in the meso-scale Rhin catchment in the German federal state Brandenburg was done (1) to answer some specific questions concerning identification of point and diffuse sources of nutrient pollution in the catchment, (2) to assess the influences of possible climate and land use changes on water quantity and quality and (3) to evaluate potential measures to be done in order to achieve a “good ecological status” of the river and its lakes as required by the Water Framework Directive (WFD).The Rhin catchment is a typical highly regulated lowland river basin in Northern Germany. The regulations complicate water quantity and quality modelling in the catchment. The research was done by using the eco-hydrological model SWIM (Soil and Water Integrated Model), which simulates water and nutrient fluxes in soil and vegetation, as well as transport of water and nutrients to and within the river network. The modelling period was from 1981 until 2005. After calibrating the hydrological processes at different gauges within the basin with satisfactory results, water quality (nitrogen and phosphorus) modelling was done taking into account the emissions of different point sources (sewage treatment plants, etc.) and identifying the amount of diffuse pollution caused mainly by agriculture.For suggesting some feasible measures to improve water quality and to reduce diffuse pollution considering possible climate and land use changes, different reasonable scenarios were applied in consultation with the Environmental Agency of Brandenburg (LUA). The study revealed that the amount of water discharge has significant influence on the concentration of nutrients in the river network, and that nitrogen pollution, caused mainly by diffuse sources, could be notably reduced by application of agricultural measures, whereas the pollution by phosphorus could be diminished most effectively by the reduction of point source emissions.     

Rats on the run: removal of alien terrestrial predators affects bush rat behaviour

Predators can strongly influence the microhabitat use and foraging behaviour of prey. In a large-scale replicated field experiment in East Gippsland, Australia, we tested the effects of reduced alien red fox (Vulpes vulpes) and alien wild dog (Canis lupus familiaris) abundance (treatment) on native bush rat (Rattus fuscipes) behaviour. Bush rats are exposed to two main guilds of predators, namely mammalian carnivores and birds of prey. Tracking rat movements using the spool-and-line technique revealed that, in treatment sites, rats used ground cover, which provides shelter from predators, less often than at unmanipulated fox and wild dog abundance (non-treatment sites). In treatment sites, rats more frequently moved on logs where they would have been exposed to hunting foxes and dogs than in non-treatment sites. Furthermore, in treatments, rats showed a preference for understorey but not in non-treatments. Hence, bush rats adapted their behaviour to removal of alien terrestrial predators. Giving-up densities (GUDs) indicated no treatment effects on the marginal feeding rate of bush rats. Interestingly, GUDs were higher in open patches than in sheltered patches, suggesting higher perceived predation risk of bush rats during foraging at low versus high cover. The lack of treatment effects on GUDs but the clear response of bush rats to cover may be explained by the impact of predators other than foxes and wild dogs.     

Dams and Flows: Immersing in Western Meaning Systems in Search of Ecocultural Reflexivity

In this unprecedented era of anthropogenic ecological destruction, this study illustrates inadequacies in conceptual language available in Western settings to think deeply and holistically about “nature.” At the same time, the study illustrates transformative potential of moments of ecocultural reflexivity. Using free write methodology, we examine ways participants in the United States, New Zealand, and Australia articulate what they mean when they say “nature.” We interpret participant streams of consciousness as representative of a wider Western river-way, a channel of dominant, multiple, and contradictory meanings in continuous movement. We identify conceptual obstructions that provide glimpses into ways Western ecological relations are bounded and dammed by binary, fragmented, and unconsidered meanings. Yet reflexivity in the face of such obstructions, and in potent ecocultural side streams of childhood remembering and ecocentric cosmology, provides some participants a lucid flow of regenerative narratives at a time such shared stories are urgently needed.     

A possible prenatal evaluation of renal function by amino acid analysis on fetal urine

Intrauterine treatment of 4 fetuses with urethral obstruction was attempted in the third trimester of pregnancy. The fetuses displayed varying sonographic findings including pyelectasis, caliectasis, hydroureter, bladder dilatation, ascites, hydrops, missing kidneys and oligohydramnios. Ultrasonically guided aspiration from the dilated structures was carried out to relieve pressure on the kidney parenchyme and to collect fluid samples for diagnostic purposes. Amino acid concentrations in the fetal urine showed a pattern similar to plasma in 2 fetuses, a pattern almost like urine in 1 fetus and an intermediate pattern in the 4th fetus. Only the fetus with normal amino acid concentrations in the urine survived: the other 3 died in uremia shortly after birth. In 3 cases cells from the aspirated urine were cultured and used for chromosome analysis. The cell cultures grew fast and karyotyping was possible within 1 week. In 2 fetuses an intrauterine catheter was inserted to drain the kidney permanently into the amniotic cavity. In the first case the catheter was displaced to the fetal abdomen after some days of successful drainage. In the second case the catheter tore the placenta, and the child had to be delivered immediately.     

A chemical view of the most ancient metazoa--biomarker chemotaxonomy of hexactinellid sponges

Hexactinellid sponges are often considered to be the most ancient metazoans. Lipid biomarkers from 23 species were studied for information on their phylogenetic properties, particularly their disputed relation to the two other sponge classes (Demospongiae, Calcarea). The most prominent lipid compounds in the Hexactinellida comprise C28 to C32 polyenoic fatty acids. Their structures parallel the unique patterns found in demosponge membrane fatty acids ('demospongic acids') and strongly support a close phylogenetic association of the Demospongiae and the Hexactinellida. Both taxa also show unusual mid-chain methylated fatty acids (C15-C25) and irregular C25- and C40-isoprenoid hydrocarbons, tracers for specific eubacteria and Archaea, respectively. These biomarkers indicate a similar, highly conservative symbiont community, although some shift in the abundance of the associated microbiota was observed. The lack of these features in calcareous sponges further contradicts the still common view that Calcarea and Demospongiae are more closely related to each other than either is to the Hexactinellida.