Rapid whole exome sequencing in pregnancies to identify the underlying genetic cause in fetuses with congenital anomalies detected by ultrasound imaging

Objective

The purpose of this study was to explore the diagnostic yield and clinical utility of trio-based rapid whole exome sequencing (rWES) in pregnancies of fetuses with a wide range of congenital anomalies detected by ultrasound imaging.

Methods

In this observational study, we analyzed the first 54 cases referred to our laboratory for prenatal rWES to support clinical decision making, after the sonographic detection of fetal congenital anomalies. The most common identified congenital anomalies were skeletal dysplasia (n = 20), multiple major fetal congenital anomalies (n = 17) and intracerebral structural anomalies (n = 7).

Results

A conclusive diagnosis was identified in 18 of the 54 cases (33%). Pathogenic variants were detected most often in fetuses with skeletal dysplasia (n = 11) followed by fetuses with multiple major fetal congenital anomalies (n = 4) and intracerebral structural anomalies (n = 3). A survey, completed by the physicians for 37 of 54 cases, indicated that the rWES results impacted clinical decision making in 68% of cases.

Conclusions

These results suggest that rWES improves prenatal diagnosis of fetuses with congenital anomalies, and has an important impact on prenatal and peripartum parental and clinical decision making.     

Setting conservation priorities for migratory networks under uncertainty

Conserving migratory species requires protecting connected habitat along the pathways they travel. Despite recent improvements in tracking animal movements, migratory connectivity remains poorly resolved at a population level for the vast majority of species, thus conservation prioritization is hampered. To address this data limitation, we developed a novel approach to spatial prioritization based on a model of potential connectivity derived from empirical data on species abundance and distance traveled between sites during migration. We applied the approach to migratory shorebirds of the East Asian‐Australasian Flyway. Conservation strategies that prioritized sites based on connectivity and abundance metrics together maintained larger populations of birds than strategies that prioritized sites based only on abundance metrics. The conservation value of a site therefore depended on both its capacity to support migratory animals and its position within the migratory pathway; the loss of crucial sites led to partial or total population collapse. We suggest that conservation approaches that prioritize sites supporting large populations of migrants should, where possible, also include data on the spatial arrangement of sites.     

The effect of sea-water submergence on rhizome bud viability of the introducedAmmophila arenaria and the nativeLeymus mollis in California

Ammophila arenaria, an invasive European beach grass, dominates most United States Pacific coast beaches north of San Francisco Bay, and it appears to severely reduce opportunities for regeneration of native plant species, including American beach grass,Leymus mollis. The knowledge of how longAmmophila rhizomes can survive in sea-water is important for long-tern management strategies, which must consider the probability of reinvasion of areas whereAmmophila has been eradicated. The bud viability of bothAmmophila arenaria andLeymus mollis remained high following submergence in sea-water for 7 days, andLeymus bud viability was still high after 13 days submergence. In fact,Leymus bud viability appears to be enhanced slightly by submergence for 7 days in sea-water. SinceAmmophila rhizomes retain a mean bud viability of >50% following submergence for 7 days, there is clearly the potential for long distance dispersal to other beaches. Even after 13 days of submergence,Ammophila rhizomes still had a mean bud viability of 8.5%. Assuming near-shore current speeds of 5–45 cm/sec, viableAmmophila rhizomes can be transported up to 505 km in 13 days.     

Does supernormal stimulus influence parental behaviour of the cuckoo's host?

The supernormal stimulus hypothesis (SSH) states that a cuckoo chick should obtain more parental care than host young by means of exaggerated sensory signals. We tested the SSH by comparing parental care by reed warblers at parasitized and non-parasitized nests. A comparison of feeding rates to parasite and host chicks of the same size showed that parasitized nests received more food than non-parasitized ones with one host chick. There was an interesting relationship between average prey length and the mass of a cuckoo chick: prey length first increased with chick mass, but decreased after the cuckoo chick outgrew the average-sized host brood (three to four young at fledging). This might be expected if fosterers reduced the selectivity of their foraging behaviour when trying to satisfy the supernormal food demands of the parasitic chick. This suggestion is supported by the finding that the relationship between nestling mass and proportion of less economical small prey is inverse to the relationship between nestling mass and prey size. These results suggest that the parental behaviour of reed warblers is adjusted by selection to the needs of an average-sized brood. The overall proportion of insect orders was significantly different between the parasitic and host chicks. This result probably reflects the opportunistic foraging habits of the host. The qualitative difference (proportion of insect orders) between host and cuckoo nestling diets is partly a by-product of unequal length distribution of members of different taxonomic groups. The results of this study are consistent with the SSH.     

A link between eumelanism and calcium physiology in the barn owl

In many animals, melanin-based coloration is strongly heritable and is largely insensitive to the environment and body condition. According to the handicap principle, such a trait may not reveal individual quality because the production of different melanin-based colorations often entails similar costs. However, a recent study showed that the production of eumelanin pigments requires relatively large amounts of calcium, potentially implying that melanin-based coloration is associated with physiological processes requiring calcium. If this is the case, eumelanism may be traded-off against other metabolic processes that require the same elements. We used a correlative approach to examine, for the first time, this proposition in the barn owl, a species in which individuals vary in the amount, size, and blackness of eumelanic spots. For this purpose, we measured calcium concentration in the left humerus of 85 dead owls. Results showed that the humeri of heavily spotted individuals had a higher concentration of calcium. This suggests either that plumage spottiness signals the ability to absorb calcium from the diet for both eumelanin production and storage in bones, or that lightly spotted individuals use more calcium for metabolic processes at the expense of calcium storage in bones. Our study supports the idea that eumelanin-based coloration is associated with a number of physiological processes requiring calcium.     

Mutualistic stability in the arbuscular mycorrhizal symbiosis: exploring hypotheses of evolutionary cooperation

The 450-million-year-old symbiosis between the majority of land plants and arbuscular mycorrhizal fungi (AMF) is one of the most ancient, abundant, and ecologically important mutualisms on Earth. Yet, the evolutionary stability of mycorrhizal associations is still poorly understood, as it follows none of the constraints thought to stabilize cooperation in other well-known mutualisms. The capacity of both host and symbiont to simultaneously interact with several partners introduces a unique dilemma; detecting and punishing those exploiting the mutualism becomes increasingly difficult if these individuals can continue to access resources from alternative sources. Here, we explore four hypotheses to explain evolutionary cooperation in the arbuscular mycorrhizal symbiosis: (1) pseudo-vertical transmission and spatial structuring of plant and fungal populations leading to local adaptation of partners; (2) luxury resource exchange in which plants trade surplus carbon for excess fungal nutrients; (3) partner choice allowing partners to associate with better cooperators; and (4) host and symbiont sanctions which actively reward good partners and punish less cooperative ones. We propose that mycorrhizal cooperation is promoted by an exchange of surplus resources between partners and enforced through sanctions by one or both partners. These mechanisms may allow plant and fungal genotypes to discriminate against individuals employing exploitative strategies, promoting patterns of partner choice. Together these selection pressures provide a framework for understanding the stabilization of mycorrhizal cooperation over evolutionary time.     

Host species affects the growth rate of cuckoo (Cuculus canorus) chicks

The cuckoo (Cuculus canorus) is an obligate interspecific brood parasite. When about to lay an egg, the female must decide which nest to parasitise. A high-quality host species should be preferred, to enhance the possibility of producing a viable offspring. In this study, we investigated the effects of two closely related host species, the great reed warbler (Acrocephalus arundinaceus) and the reed warbler (A. scirpaceus) on the growth rate of cuckoo nestlings. We found that cuckoo nestlings raised by the larger host species, the great reed warbler, grew significantly faster and became statistically significantly larger at fledging than nestlings raised by the smaller host, the reed warbler. Our results indicate a qualitative difference between the two host species. The great reed warbler, considered to be the best host, was parasitised at a higher rate than the reed warbler. Received: 2 February 1999 / Received in revised form: 3 September 1999 / Accepted: 18 September 1999