Energy dissipation estimates in oscillating grid setup: LDV and PIV measurements

The dissipation of turbulent kinetic energy has been increasingly used as a scaling parameter to integrate microbiological accrual and metabolic rates with fluid-flow motion in natural and engineered aquatic ecosystems. The estimation of turbulent kinetic energy under field conditions and the generation of energy dissipation rates under controlled laboratory conditions with microbiological organisms are necessities required to integrate environmental/ecological laboratory protocols with a moving fluid in the environment. Turbulent fluid-flow conditions were generated in an oscillating grid setup, and turbulence variables were quantified using laser-Doppler velocimetry (LDV) and particle image velocimetry (PIV) measuring techniques. The rate of dissipation of the turbulent kinetic energy in the setup ranged from 10⁻⁹ to 10⁻⁴ m²/s³ and was similar to the levels of energy dissipation commonly reported in engineered and natural aquatic ecosystems. Time-averaged velocities were close to zero with the root-mean-square velocity ratios about 1, indicating nearly isotropic fluid-flow conditions in the setup. The velocity spectra, obtained by stationary LDV measurements for the vertical and horizontal velocity components across the setup revealed the existence of inertial subrange with the frequency power scaling law of “ω ^−5/3.” The estimated Eulerian frequency spectrum followed the theoretical functional relation and confirmed the applicability of inertial dissipation method for the estimation of turbulent kinetic energy dissipation rates. PIV was used for a direct estimation of dissipation by evaluating spatially distributed velocity gradients. The direct dissipation estimate in conjunction with the estimated Eulerian frequency spectrum provided evaluation of a “universal” constant, α, commonly used for the estimation of an energy dissipation rate over the inertial subrange of the Eulerian spectrum. The results demonstrated a range of values, rather than a universal constant, of α with a lognormal probability distribution for vertical and horizontal velocity components. In order to encompass a 0.955 probability range under the lognormal distribution the universal constant, α, should be in the range 2.91 ≥ α _u ≥ 0.43 and 4.44 ≥ α _w ≥ 0.42 for horizontal and vertical velocity components, respectively.     

Distribution and abundance of finless porpoise in the Inland Sea of Japan

Aerial sighting surveys were conducted in 2000 to evaluate the distribution and abundance of finless porpoise Neophocaena phocaenoides in the Inland Sea of Japan. We flew 60 north–south transects (2,218 km in total) at intervals of 6.43 km over the study area between 131°3′ and 134°59′ E. In total, 148 groups were detected by two observers. The average group size was 1.56 individuals. The effective strip half-width of each observer was estimated to be 107 m (coefficient of variation [CV] = 8.26%). Porpoise abundance was estimated at 7,572 individuals and the density was as low as 0.506 individuals/km² (CV = 17.3%). The sea is among the Japanese waters with the lowest density in spite of its favorable topographical conditions. In the western stratum of the study area, where the estimated density was 1.31 individuals/km², we observed a relatively regular distribution. In the central-eastern stratum, which had an estimated density of 0.208 individuals/km², we confirmed a clumped distribution that was restricted to inshore waters or near islands. No individuals were observed in waters between 132°51′ and 133°11′E, and between 133°43′ and 133°59′E, where sand dredging and other human activities have been active, suggesting that habitat fragmentation has occurred.     

Enantioselective recognition of mono-demethylated methoxychlor metabolites by the estrogen receptor

Metabolites of methoxychlor such as 2-(p-hydroxyphenyl)-2-(p-methoxyphenyl)-1,1,1-trichloroethane (mono-OH-MXC) and 2,2-bis(p-hydroxyphenyl)-1,1,1-trichloroethane (bis-OH-MXC), have estrogenic activity. Mono-OH-MXC is a chiral compound in which the carbon atom bridging two benzene rings is the chiral centre. In previous studies the estrogenic activity of racemic mono-OH-MXC has been measured, and the activity of each enantiomer of this compound has not yet been elucidated. In this study, we evaluated the estrogen receptor-binding activity of each enantiomer of mono-OH-MXC to clarify the enantioselective recognition by the estrogen receptor. (S)-mono-OH-MXC showed 3-fold higher binding activity than that of the (R) enantiomer. The activity of bis-OH-MXC was only 1.7-fold higher than that of (S)-mono-OH-MXC. This result suggests that the one hydroxy group and the orientation of the CCl3 group of mono- and bis-OH-MXCs are important for the interaction with the estrogen receptor. The result also points out the estrogenic activity of methoxychlor after metabolic activation in vivo, which predominantly produces the (S)-mono-OH-MXC, may be higher than estimated from the in vitro activity of racemic mixtures.     

DNA-based prenatal carrier detection for group a xeroderma pigmentosum in a chorionic villus sample

DNA-based prenatal carrier detection of group A xeroderma pigmentosum (XP-A) is reported. Chorionic villus sampling was done at the tenth gestational week in a pregnant woman whose first child suffers from XP-A. Genomic DNAs from the villi, proband, and parents were PCR (polymerase chain reaction)-amplified using three sets of primers, because the PCR and a subsequent enzyme digestion with HphI, AlwNI, or MseI may detect the three most frequent mutations of the XP-A complementing gene (XPAC) in Japanese XP-A patients. The results showed that the proband is a homozygote and that the parents and fetus are heterozygotes for a base substitution at the 3′ acceptor site of intron 3 of XPAC, indicating that the fetus is a healthy carrier of XP-A. This is the first case of prenatal carrier detection of the disorder.     

Evaluation and application of a three-dimensional water quality model in a shallow lake with complex morphometry

Fundamental hydrodynamic and ecological processes of a lake or reservoir could be adequately depicted by one-dimensional (1D) numerical simulation models. Whereas, lakes with significant horizontal water quality and hydrodynamic gradients due to their complex morphometry, inflow or water level fluctuations require a three-dimensional (3D) hydrodynamics and ecological analyses to accurately simulate their temporal and spatial dynamics. In this study, we applied a 3D hydrodynamic model (ELCOM) coupled with an ecological model (CAEDYM) to simulate water quality parameters in three bays of the morphologically complex Lake Minnetonka. A considerable effort was made in setting up the model and a systematic parameterization approach was adopted to estimate the value of parameters based on their published values. Model calibration covered the entire length of the simulation periods from March 29 to October 20, 2000. Sensitivity analysis identified the top parameters with the largest contributions to the sensitivity of model results. The model was next verified with the same setup and parameter values for the period of April 25 to October 10, 2005 against field data. Spatial and temporal dynamics were well simulated and model output results of water temperature (T), dissolved oxygen (DO), total phosphorus (TP) and one group of algae (Cyanobacteria) represented as chlorophyll a (Chla) compared well with an extensive field data in the bays. The results show that the use of the model along with an accurate bathymetry, a systematic calibration and corroboration (verification) process will help to analyze the hydrodynamics and geochemical processes of the morphologically complex Lake Minnetonka. An example of an ecological application of the model for Lake Minnetonka is presented by examining the effect of spatial heterogeneity on coolwater fish habitat analysis in 3D and under a scenario where horizontal spatial heterogeneity was eliminated (1D). Both analyses captured seasonal fish habitat changes and the total seasonal averages differed moderately. However, the 1D analysis did not capture local and short duration variabilities and missed suitable fish habitat variations of as much as 20%. The experiment highlighted the need for a 3D analysis in depicting ecological hot spots such as unsuitable fish habitats in Lake Minnetonka.