Bacterial community structure analysis of sediment in the Sagami River, Japan using a rapid approach based on two-dimensional DNA gel electrophoresis mapping with selective primer pairs

A rapid approach based on two-dimensional DNA gel electrophroesis (2-DGE) mapping with selective primer pairs was employed to analyze bacterial community structure in sediments from upstream, midstream and downstream of Sagami River in Japan. The 2-DGE maps indicated that Alpha- and Delta-proteobacteria were major bacterial populations in the upstream and midstream sediments. Further bacterial community structure analysis showed that richness proportion of Alpha- and Delta-proteobacterial groups reflected a trend toward decreasing from the upstream to downstream sediments. The biomass proportion of bacterial populations in the midstream sediment showed a significantly difference from that in the other sediments, suggesting that there may be an environmental pressure on the midstream bacterial community. Lorenz curves, together with Gini coefficients were successfully applied to the 2-DGE mapping data for resolving evenness of bacterial populations, and showed that the plotted curve from high-resolution 2-DGE mapping became less linear and more an exponential function than that of the 1-DGE methods such as chain length analysis and denaturing gradient gel electrophoresis, suggesting that the 2-DGE mapping may achieve a more detailed evaluation of bacterial community. In conclusion, the 2-DGE mapping combined with the selective primer pairs enables bacterial community structure analysis in river sediment and thus it can also monitor sediment pollution based on the change of bacterial community structure.     

Solid-state anaerobic co-digestion of food waste,rice straw,and rice husk supplemented with cattle digesta under thermophilic conditions

Journal of Material Cycles and Waste Management - Improving the solid-state digestion of food waste (FW) is important for recovering energy and utilizing the digested residue as fertilizer. Herein,...     

Tracer transport model at Japan meteorological agency and its application to the ETEX data

This paper describes the JMA tracer transport model and its sensitivity to model physics and initial conditions by using the ETEX data. Compared with observations, the model overestimates ground-level concentration in the early stage within about one day from the emission, possibly due to underestimation of vertical diffusion. In the early stage, the enhanced vertical diffusion effectively transports the tracer upward and decreases the ground-level concentration, while in the later stage, it enhances downward transports from the upper layer and increases the ground-level concentration. A conceptual model is given for understanding the vertical transport due to vertical diffusion. The horizontal diffusion introduced to the model has preferable impacts on forecasts especially in the early stage. Finally, we discuss the predictability of this model based on sensitivity to initial conditions of emission time and height.     

The dynamics of mercury around an artisanal and small-scale gold mining area,Camarines Norte,Philippines

Environmental Science and Pollution Research - To elucidate the dynamics of mercury emitted and released by artisanal and small-scale gold mining (ASGM) activity and to estimate its impact on the...