Evaluation of Museum Collection Data for Use in Biodiversity Assessment

Abstract: Natural-history collections in museums contain data critical to decisions in biodiversity conservation. Collectively, these specimen-based data describe the distributions of known taxa in time and space. As the most comprehensive, reliable source of knowledge for most described species, these records are potentially available to answer a wide range of conservation and research questions. Nevertheless, these data have shortcomings, notably geographic gaps, resulting mainly from the ad hoc nature of collecting effort. This problem has been frequently cited but rarely addressed in a systematic manner. We have developed a methodology to evaluate museum collection data, in particular the reliability of distributional data for narrow-range taxa. We included only those taxa for which there were an appropriate number of records, expert verification of identifications, and acceptable locality accuracy. First, we compared the available data for the taxon of interest to the "background data," comprised of records for those organisms likely to be captured by the same methods or by the same collectors as the taxon of interest. The "adequacy"of background sampling effort was assessed through calculation of statistics describing the separation, density, and clustering of points, and through generation of a sampling density contour surface. Geographical information systems (GIS) technology was then used to model predicted distributions of species based on abiotic (e.g., climatic and geological) data. The robustness of these predicted distributions can be tested iteratively or by bootstrapping. Together, these methods provide an objective means to assess the likelihood of the distributions obtained from museum collection records representing true distributions. Potentially, they could be used to evaluate any point data to be collated in species maps, biodiversity assessment, or similar applications requiring distributional information.     

Development of the SAPRC-07 chemical mechanism

An updated version of the SAPRC-99 gas-phase atmospheric chemical mechanism, designated SAPRC-07, is described. The rate constants and reactions have been updated based on current data and evaluations, the aromatics mechanisms have been reformulated and are less parameterized, chlorine chemistry has been added, the method used to represent peroxy reactions has been reformulated to be more appropriate for modeling gas-phase secondary organic aerosol precursors, and representations for many types of VOCs have been added or improved. This mechanism was evaluated against the result of ～2400 environmental chamber experiments carried out in 11 different environmental chambers, including experiments to test mechanisms for over 110 types of VOCs. The performance in simulating the chamber data was generally satisfactory for most types of VOCs but some biases were seen in simulations of some types of experiments. The mechanism was used to derive updated MIR and other ozone reactivity scales for almost 1100 types of VOCs, though in most cases the changes in MIR values relative to SAPRC-99 were not large. This mechanism update results in somewhat lower predictions of ozone in one-day ambient model scenarios under low VOC/NO_x conditions. The files needed to implement the mechanism and additional documentation is available at the SAPRC mechanism web site at http://www.cert.ucr.edu/～carter/SAPRC.     

Indigenous community-based fisheries in Australia

The commercial sea cucumber species known as Sandfish (Holothuria scabra) occurs intertidally and subtidally in the Northern Territory of Australia, on or adjacent to Aboriginal land. A 4-yr program of community-based fisheries research with Aboriginal Australians was implemented to assess the viability of indigenous Australians' involvement in the wild-stock fishery. The research involved extensive and intensive indigenous participation, unusual in Australian biophysical sciences research, during field survey and habitat mapping, complemented by commercial catch data modelling and discussion of its implications. Field surveys produced Sandfish distribution and site-specific density, and revealed some areas that were not commercially fished. Catch data modelling results suggested that no additional effort could be sustained, however commercial fishers increased their effort, expanding their operations into the newly mapped areas. These actions effectively precluded indigenous peoples' aspirations of entry into the commercial fishery. The efficacy and outcomes of participatory program design with indigenous Australians need critique in the absence of the political will and statutory backing to provide equitable access to resources.     

Motor vehicle restraint system use and risk of spine injury

OBJECTIVE: Motor vehicle collision (MVC)-related spinal injury is a severe and often permanently disabling injury. In addition, strain injuries have been reported as a common outcome of MVCs. Although advances in automobile crashworthiness have reduced both fatalities and severe injuries, the impact of varying occupant restraint systems (seatbelts and airbags) on thoracolumbar spine injuries is unknown. This study examined the relationship between the occurrence of mild to severe cervical and thoracolumbar spine injury and occupant restraint systems among front seat occupants involved in frontal MVCs. METHODS: A retrospective cohort study was conducted among subjects obtained from the 1995-2004 National Automotive Sampling System. Cases were identified based on having sustained a spine injury of >/=1 on the Abbreviated Injury Scale (AIS), 1990 Revision. Risk risks (RRs) and 95% confidence intervals (CIs) were computed comparing occupant restraint systems with unrestrained occupants. RESULTS: We found an overall incidence of AIS1 cervical (11.8%) and thoracolumbar (3.7%) spinal injury. Seatbelt only restraints were associated with increased cervical AIS1 injury (RR = 1.40, 95% CI 1.04-1.88). However, seatbelt only restraints showed the greatest risk reduction for AIS2 spinal injuries. Airbag only restraints reduced thoracolumbar AIS1 injuries (RR = 0.29, 95% CI 0.08-1.04). Seatbelt combined with airbag use was protective for cervical AIS3+ injury overall (RR = 0.29, 95% CI 0.14-0.58), cervical neurological injury (RR = 0.19, 95% CI 0.05-0.81), and thoracolumbar AIS3+ injury overall (RR = 0.20, 95% CI 0.05-0.70). CONCLUSIONS: The results of this study suggest that seatbelts alone or in combination with an airbag increased the incidence of AIS1 spinal injuries, but provide protection against more severe injury to all regions of the spine. Airbag deployment without seatbelt use did not show increased protection relative to unrestrained occupants.     

A novel role for proline in plant floral nectars

Plants offer metabolically rich floral nectar to attract visiting pollinators. The composition of nectar includes not only sugars, but also amino acids. We have examined the amino acid content of the nectar of ornamental tobacco and found that it is extremely rich (2 mM) in proline. Because insect pollinators preferentially utilize proline during the initial phases of insect flight and can reportedly taste proline, we determined whether honeybees showed a preference for synthetic nectars rich in proline. We therefore established an insect preference test and found that honeybees indeed prefer nectars rich in the amino acid proline. To determine whether this was a general phenomenon, we also examined the nectars of two insect-pollinated wild perennial species of soybean. These species also showed high levels of proline in their nectars demonstrating that plants often produce proline-rich floral nectar. Because insects such as honeybees prefer proline-rich nectars, we hypothesize that some plants offer proline-rich nectars as a mechanism to attract visiting pollinators.     

Comparison of speciation sampler and PC-BOSS fine particulate matter organic material results obtained in Lindon, Utah, during winter 2001-2002

The Particle Concentrator-Brigham Young University Organic Sampling System (PC-BOSS) has been previously verified as being capable of measuring total fine particulate matter (PM2.5), including semi-volatile species. The present study was conducted to determine if the simple modification of a commercial speciation sampler with a charcoal denuder followed by a filter pack containing a quartz filter and a charcoal-impregnated glass (CIG) fiber filter would allow for the measurement of total PM2.5, including semi-volatile organic material. Data were collected using an R&P (Rupprecht and Pastasnik Co., Inc.) Partisol Model 2300 speciation sampler; an R&P Partisol speciation sampler modified with a BOSS denuder, followed by a filter pack with a quartz and a CIG filter; a Met One spiral aerosol speciation sampler (SASS); and the PC-BOSS from November 2001 to March 2002 at a U.S. Environmental Protection Agency (EPA) Science to Achieve Results (STAR) sampling site in Lindon, UT. Total PM2.5 mass, ammonium nitrate (both nonvolatile and semi-volatile), ammonium sulfate, organic carbon (both non-volatile and semi-volatile), and elemental carbon were determined on a 24-hr basis. Results obtained with the individual samplers were compared to determine the capability of the modified R&P speciation sampler for measuring total PM2.5, including semi-volatile components. Data obtained with the modified speciation sampler agreed with the PC-BOSS results. Data obtained with the two unmodified speciation samplers were low by an average of 26% because of the loss of semi-volatile organic material from the quartz filter during sample collection.     

Sulfate-enriched water effects on a floodplain forest in Florida

Sulfate-enriched water that was discharged experimentally into a floodplain forest in Florida caused H₂S formation, and trees showed signs of stress within one year. Chloride-enriched water also caused trees to show signs of stress. Trees in this ecosystem may also be sensitive to changes in hydroperiod.     

SENSITIVITY OF A PRAIRIE WETLAND TO INCREASED TEMPERATURE AND SEASONAL PRECIPITATION CHANGES1

ABSTRACT: We assessed the potential effects of increased temperature and changes in amount and seasonal timing of precipitation on the hydrology and vegetation of a semi-permanent prairie wetland in North Dakota using a spatially-defined, rule-based simulation model. Simulations were run with increased temperatures of 2°C combined with a 10 percent increase or decrease in total growing season precipitation. Changes in precipitation were applied either evenly across all months or to individual seasons (spring, summer, or fall). The response of semi-permanent wetland P1 was relatively similar under most of the seasonal scenarios. A 10 percent increase in total growing season precipitation applied to summer months only, to fall months only, and over all months produced lower water levels compared to those resulting from the current climate due to increased evapotranspiration. Wetland hydrology was most affected by changes in spring precipitation and runoff. Vegetation response was relatively consistent across scenarios. Seven of the eight seasonal scenarios produced drier conditions with no open water and greater vegetation cover compared to those resulting from the current climate. Only when spring precipitation increased did the wetland maintain an extensive open water area (49 percent). Potential changes in climate that affect spring runoff, such as changes to spring precipitation and snow melt, may have the greatest impact on prairie wetland hydrology and vegetation. In addition, relatively small changes in water level during dry years may affect the period of time the wetland contains open water. Emergent vegetation, once it is established, can survive under drier conditions due to its ability to persist in shallow water with fluctuating levels. The model's sensitivity to changes in temperature and seasonal precipitation patterns accentuates the need for accurate regional climate change projections from general circulation models.