Model selection criteria for overdispersed data and their application to the characterization of a host-parasite relationship

In the statistical modeling of a biological or ecological phenomenon, selecting an optimal model among a collection of candidates is a critical issue. To identify an optimal candidate model, a number of model selection criteria have been developed and investigated based on estimating Kullback’s (Information theory and statistics. Dover, Mineola, 1968) directed or symmetric divergence. Criteria that target the directed divergence include the Akaike (2nd international symposium on information theory. Akadémia Kiadó, Budapest, Hungary, pp 267–281, 1973, IEEE Trans Autom Control AC 19:716–723, 1974) information criterion, AIC, and the “corrected” Akaike information criterion (Hurvich and Tsai in Biometrika 76:297–307, 1989), AICc; criteria that target the symmetric divergence include the Kullback information criterion, KIC, and the “corrected” Kullback information criterion, KICc (Cavanaugh in Stat Probab Lett 42:333–343, 1999; Aust N Z J Stat 46:257–274, 2004). For overdispersed count data, simple modifications of AIC and AICc have been increasingly utilized: specifically, the quasi Akaike information criterion, QAIC, and its corrected version, QAICc (Lebreton et al. in Ecol Monogr 62(1):67–118 1992). In this paper, we propose analogues of QAIC and QAICc based on estimating the symmetric as opposed to the directed divergence: QKIC and QKICc. We evaluate the selection performance of AIC, AICc, QAIC, QAICc, KIC, KICc, QKIC, and QKICc in a simulation study, and illustrate their practical utility in an ecological application. In our application, we use the criteria to formulate statistical models of the tick (Dermacentor variabilis) load on a white-footed mouse (Peromyscus leucopus) in northern Missouri.     

Complex national sampling design for long-term monitoring of protected dry grasslands in Switzerland

We describe a probabilistic sampling design of circular permanent plots for the long-term monitoring of protected dry grasslands in Switzerland. The population under study is defined by the perimeter of a national inventory. The monitoring focus is on the species composition of the protected grassland vegetation and derived conservation values. Efficient trend estimations are required for the whole country and for some predefined target groups (six biogeographical regions and eleven vegetation types). The target groups are equally important regardless of their size. Consequently, intensified sampling of the less frequent groups is essential for sample efficiency. The prior information needed to draw a targeted sample is obtained from the sampling frame and external databases. The logistics and generalized delineation of the target population may pose further problems. Thus, investments in fieldwork and travel time should be well balanced by selecting a cluster sample. Second, any access problems in the field and non-target units in the sample should be compensated for by selecting reserve plots as they otherwise may considerably reduce the effective sample size. Finally, the design has to be flexible as the sampling frame may change over time and sampling intensity might have to be adjusted to redefined budgets or requirements. Likewise, the variables and biological items of interest may change. To fulfil all these constraints and to optimally use the available prior information, we propose a multi-stage self-weighted unequal probability sampling design. The design uses modern techniques such as: balanced sampling, spreading, stratified balancing, calibration, unequal probability sampling and power allocation. This sampling design meets the numerous requirements of this study and provides a very efficient estimator.     

Solvent-free biodiesel epoxidation

Biodiesel emerged again recently as an alternative for fossil fuels. Besides energy, biodiesel can be used as raw material to synthesize high value products such as epoxides. Indeed, epoxides are versatile intermediates in organic synthesis for numerous reactions due to the high reactivity of the oxirane ring. Actually common epoxidation by peracids in organic solvent can last several hours according to the double bonds number. The solvent confers selectivity to the reaction, preventing di-hydroxylation. Alternatively solvent-free reactions can be done in shorter times, but hydroxylation is less controlled. Here, we set up the synthesis of epoxides from methyl and ethyl esters of waste cooking oil, without solvent or metal catalyst. We tested molar ratio of hydrogen peroxide and formic acid, double bond number, reaction time, and temperature. Results show that the highest epoxide yields and selectivity, with high conversion of the double bonds, were obtained for temperature reactions between 50 and 65 °C, reaction times from 2 to 3 h, and molar ratio of 20/2/1. For those conditions, the double bonds conversion is equal or near 100 %, with epoxide yield and selectivity between 85 and 93 %. Organic solvent suppression, besides being environmentally friendly, also saves reaction time and subsequent purification steps.     

Genotoxic effects of metals on human salivary gland tissue and lymphocytes as detected by the Comet assay

The etiology of salivary gland malignancies still remains unclear. Metal compounds are of special interest since they show ubiquitous presence in the environment, are present in many working places, and are accepted (co-)carcinogens in some other malignancies. Metals enter the body as xenobiotics by inhalation or ingestion. This study investigated the genotoxic potential of sodium dichromate (Na₂Cr₂O₇), nickel sulfate (NiSO₄), cadmium sulfate (CdSO₄) and zinc chloride (ZnCl₂) on human salivary gland cells and lymphocytes. Macroscopically healthy tissue of salivary glands was harvested from 46 patients during surgery and isolated to single cells by enzymatic digestion. The cells were incubated with Na₂Cr₂O₇, NiSO₄, CdSO₄ or ZnCl₂. Na₂Cr₂O₇ was also incubated in combination with the other metal compounds listed. Carcinogenic and co-carcinogenic effects of cadmium were tested by incubation with Na₂Cr₂O₇ and consecutive repair intervals. DNA damage and repair were evaluated by the Comet assay, determining DNA-strand breaks. The extent of damage was quantified using a digital analysis system. Na₂Cr₂O₇ produced significantly enhanced DNA-strand breaks in human salivary gland tissue and lymphocytes. All other metal compounds exerted no damaging effect on both cell types. Co-incubation of Na₂Cr₂O₇ with the other metals revealed a significant additive effect only for CdSO₄. Specific analysis of the influence of cadmium showed a reduction of DNA-repair after Na₂Cr₂O₇-induced strand breaks in salivary gland cells. This study provides evidence that exposure to distinct metals may significantly contribute to malignant salivary gland tumors. In consequence, further studies as epidemiological and toxicological data are warranted to determine the role of distinct metals as potential (co-) carcinogens.     

Dissolution behavior of metals from particulate matter emissions

Exposure to air particulate matter (PM) is linked to numerous health effects. In order to improve the understanding of the role of its metallic components, their solubility was examined by using serial short-contact dissolutions totalling 1?h and additional sequential contact periods of 1, 4, and 8 days. The dissolution experiments were performed in solutions containing the main biological electrolytes. ICPMS determinations were used to quantify the dissolved metals. The total compositions were determined after closed vessel microwave digestion. Large variations in the rate and completeness of the dissolutions were observed. Fast and extensive dissolutions within the short-contact time (e.g., Zn, Cd) as well as slow dissolutions persisting during the last contact period (e.g., Ni, Cu, Sb, Pb) were found for smelting emissions. The multi-element determinations also made it possible to identify relationships between dissolution of different metals and define gradual composition changes of residual PM. When comparing with dissolutions performed in de-ionized water, similar major fractions were observed at short-contact time for minor components of smelting or combustion emissions (e.g., V, Ni, Cd), suggesting a preponderance of easily available forms at the surface of the relatively inert particle cores. The use of these time sequential methods may help in (1) modeling metal partitioning in biological media and (2) investigating the causes of adverse effects attributed to air PM.     

Levels of plasma B-esterases and glutathione-S-transferase activities in three South American toad species

We determined the normal levels of butyrylcholinesterase (BChE), carboxylesterase (CbE), and glutathione S-transferases (GST) activities in three South American toad species in order to establish reference values for field pesticide monitoring purposes. Interspecies variations in B-esterase and GST activities were examined according to body mass. In addition, comparative inhibition of BChE and CbE activities using malaoxon, and chemical reactivation of malaoxon-inhibited BChE activity using pyridine-2-aldoxime methochloride (2-PAM) were investigated. Bufo fernandezae had average activity values for BChE: 17.31 mmol min^?1 ml^?1; CbE: 621.49 nmol min^?1 ml^?1 and GST: 1.94 mmol min^?1 ml^?1 while B. arenarum enzymatic average activities were BChE: 9.51 mmol min^?1 ml^?1; CbE: 270.07 nmol min^?1 ml^?1, and GST: 1.59 mmol min^?1 ml^?1; finally Bufo schneideri had enzymatic mean values of BChE: 2.08 mmol min^?1 ml^?1; CbE: 301.95 nmol min^?1 ml^?1, and GST: 1.60 mmol min^?1 ml^?1. Moreover, we found an allometric relationship between plasma BChE and CbE activities and body size for the three toad species. We suggest that B. fernandezae would be the species with a higher tolerance capacity to organophosphorous insecticides compared to the other toad species, while B. schneideri may be the most vulnerable toad species to field pesticide exposure, although some other factors (e.g., brain AChE sensitivity or pesticide metabolism by phosphotriesterases) should be also taken into account. The malaoxon-inhibited BChE activity of the three toad species was reactivated in the presence of 2-PAM, and it is recommended as a specific and sensitive methodology in the assessment of field exposure to OP insecticides together to compare BChE activity levels between OP-exposed and nonexposed individuals.     

Potential correlation between perfluorinated acids and liver morphology in East Greenland polar bears (Ursus maritimus)

In this study, residual concentrations of chlorpyrifos (CPF) were determined in feed (40) and fodder (25) samples collected from various locations of Tarai region of Uttarakhand. For extracting residues, liquid–liquid partition followed by alumina column clean up was used and the detection and quantification of residues was undertaken with the help of high-performance liquid chromatography using C18 column and diode array detector at 220?nm. Of the total 40 feed samples analyzed, 7 (17.5%) samples were found positive for CPF with the mean residual concentration of 0.058?µg?g^?1; while out of 25 fodder samples, CPF residues were detected in a single (4%) sample with residual concentration of 0.39?µg?g^?1. However, none of the feed or fodder samples contained CPF residues above the prescribed limit.     

Mutagenicity of diesel engine exhaust in the Ames / Salmonella assay using a direct exposure method

The aim of this study was to investigate the potential mutagenic activity of diesel engine exhaust in the Ames/Salmonella assay using a direct aerosol exposure system. So, TA 98 and TA 100 strains, with or without added S9 mix, were exposed to diesel emissions after varying degrees of filtration. Variants of these two strains, deficient in nitroreductase (TA 98NR and TA 100NR) or over-expressing O-Acetyl Transferase (YG 1024 and YG 1029), were also exposed to total (unfiltered) diesel exhaust to highlight the putative mutagenicity of any nitro-PAHs present in these emissions. Mutagenic activity of the diesel exhaust was demonstrated on Salmonella typhimurium, strains TA 100 and variants TA 100 NR and YG1029. The use of a particle filter did not modify the genotoxicity of the diesel emissions, indicating a major contribution of the gas phase to the mutagenicity of these diesel emissions. The prominent role of the particulate-associated nitro-polycyclic aromatic hydrocarbons (nitro-PAHs) claimed by some authors working on diesel exhaust organic extracts was not confirmed by our results with native diesel exhaust exposure. Our results show that the gas phase is potentially more mutagenic than the particles alone.     

Voltammetric studies of damages in DNA by mutagenic and carcinogenic alkylating chemicals

Voltammetry provides new insights into the effects exerted in vitro by methylation of native DNA. Applying single sweep voltammetry at a stationary mercury electrode the successive steps of the destabilization of alkylated DNA are investigated. The methylation of the nucleic acids is manifested by a specific electrochemical response, due to the 7‐methylguanine, a major product of the methylation of DNA. Short time effects of the methylation include the labilization of 4 to 5 base pairs per methylated guanine base. Furthermore, uncommon protonation properties of the base 7‐methylguanine‐cytosine have been detected. Long term effects of the methylation are ultimately spontaneous hydrolytic strand breaks induced by the prior depurination connected with the release of the 7‐methylguanine from the methylated DNA. A half time t_1/2 of 102 h for the depurination at 37°C has been determined. The depurination and the subsequent strand breaks alter the hydrodynamic properties of the damaged DNA, an effect which can be sensitively followed with voltammetry via the resulting changes in the diffusion coefficient of the damaged biopolymer.     

Polarographic investigations on the complexation of cadmium and zinc by thiol peptides

Complex formation of Cd²⁺ and Zn²⁺ with thiol derivatives has been investigated by differential pulse polarography. The binding of Cd²⁺ and Zn²⁺ with cysteine (CySH), glutathione (GSH) and the model peptide N‐acetyl‐cysteine‐methylamide (ASH) reveals different stoichiometry. Thus, Cd²⁺ forms 1:1 and 1:2 complexes with CySH while 1:2 and 1:4 complexes have been observed with GSH and ASH, respectively. Overall formation constants of Cd²⁺ with CySH (Iogβ ₂ 15.3) and with GSH (Iogβ5₂ 14.4) have been estimated using competitive complexation with nitrilotriacetic acid (NTA). Investigation of competition between Zn²⁺ and Cd²⁺ for the thiol complexation has underlined the role played by the amino group in CySH for the stabilization of Zn complexes in contrary to Cd complexes.