Discrimination of Infectious Hepatitis A Viruses by Propidium Monoazide Real-Time RT-PCR

The discrimination of infectious and inactivated viruses remains a key obstacle when using quantitative RT-PCR (RT-qPCR) to quantify enteric viruses. In this study, propidium monoazide (PMA) and RNase pretreatments were evaluated for the detection and quantification of infectious hepatitis A virus (HAV). For thermally inactivated HAV, PMA treatment was more effective than RNase treatment for differentiating infectious and inactivated viruses, with HAV titers reduced by more than 2.4 log₁₀ units. Results showed that combining 50 μM of PMA and RT-qPCR selectively quantify infectious HAV in media suspensions. Therefore, PMA treatment previous to RT-qPCR detection is a promising alternative to assess HAV infectivity.     

Distinctive types of leaf tissue damage influence nutrient supply to growing tissues within seagrass shoots

Herbivory is now recognized as an important structuring agent in seagrass meadows but the attack pattern and tissue damage of consumers are highly variable. Nutritional preferences of herbivores and/or easy access to resources may cause differences in biomass loss among tissues that damage the plant in functionally distinctive ways. The two main Mediterranean herbivores, the fish Sarpa salpa (L.) and the sea urchin Paracentrotus lividus (Lmk.), remove higher amounts of intermediate and external shoot leaves, respectively. To test whether this selective feeding can have different consequences on the allocation patterns of nutrient within plants, we simulated the effect of both herbivores by clipping external and intermediate leaves (plus unclipped controls) of Posidonia oceanica (L.) and we measured plant tolerance in terms of shoot growth and leaf nutrient supply to new tissue using isotopic markers. As expected, control treatments displayed high carbon and nutrient supply from external leaves (83% of the total ¹⁵N and 84% of the total ¹³C incorporated by the shoot). When subjected to clipping, the remaining leaves enhanced carbon and nitrogen supply compared with the control by 16% of N and 36% of C—in the intermediate clipping—and by over 100% of N and 200% of C—in the external clipping—to compensate for the nutrient lost. However, only in the case of fish herbivory (intermediate clipping), enhanced supply alone was able to fully compensate for the nutrient losses. In contrast, this mechanism is not completely effective when external leaves are clipped (urchin herbivory). Yet, the consequences of this nutrient loss under sea urchin herbivory are not apparent from the nutrient content of the new tissue, suggesting that there are other sources of nitrogen income (uptake or reallocation from rhizomes). Our study does not only confirm the tolerance of P. oceanica to herbivory, but also constitutes the first evidence of leaf-specific, compensatory nutrient supply in seagrasses.     

Comparing Hydrogeomorphic Approaches to Lake Classification

A classification system is often used to reduce the number of different ecosystem types that governmental agencies are charged with monitoring and managing. We compare the ability of several different hydrogeomorphic (HGM)—based classifications to group lakes for water chemistry/clarity. We ask: (1) Which approach to lake classification is most successful at classifying lakes for similar water chemistry/clarity? (2) Which HGM features are most strongly related to the lake classes? and, (3) Can a single classification successfully classify lakes for all of the water chemistry/clarity variables examined? We use univariate and multivariate classification and regression tree (CART and MvCART) analysis of HGM features to classify alkalinity, water color, Secchi, total nitrogen, total phosphorus, and chlorophyll a from 151 minimally disturbed lakes in Michigan USA. We developed two MvCART models overall and two CART models for each water chemistry/clarity variable, in each case comparing: local HGM characteristics alone and local HGM characteristics combined with regionalizations and landscape position. The combined CART models had the highest strength of evidence (ω_i range 0.92–1.00) and maximized within class homogeneity (ICC range 36–66%) for all water chemistry/clarity variables except water color and chlorophyll a. Because the most successful single classification was on average 20% less successful in classifying other water chemistry/clarity variables, we found that no single classification captures variability for all lake responses tested. Therefore, we suggest that the most successful classification (1) is specific to individual response variables, and (2) incorporates information from multiple spatial scales (regionalization and local HGM variables).     

Taking advantage of storm and waste water retention basins as part of water use minimization in industrial sites

A methodology for water use minimization has been developed by the Clean Technology Network of Bahia over a 10 year period in joint cooperative programs with the chemical, petrochemical and copper metallurgy industries located in the largest Industrial Complex in Latin America, in Camaçari, Bahia, Brazil. The methodology comprises a set of tools including reconciled aqueous stream balances, database of aqueous streams; large scale training leading to the identification of water minimization alternatives in the processes, water reuse optimization approaches; geographical information systems as well as, consideration of the region's hydro and hydro-geological characteristics. The results of a study carried out to assess the possibility of using storm and wastewaters for industrial use is presented in this paper. The inorganic system is composed by three water reservoirs (basins) receiving stormwater contaminated with inorganic effluents, and occasionally with organics. These basins have been operated to control water flow inputs according to the capacity of the pumping outlet systems before their discharge to a submarine outfall. A mass balance was performed with historical updated data to assess water availability from the basins based on the daily volume variation and flow rate of inorganic effluent from 2001 to 2007. The study identified the possibility of recovering about 1140 m³/h of the overall 5400 m³/h consumed by the Industrial Complex at the moment. Organizational changes in the present effluent disposal and stormwater harvest systems will be required in order to maximize water recovery for industrial use.     

Non-independent mate choice in a fiddler crab: a case of stimulus enhancement

Non-independent mate selection occurs when the choice behavior of a female is altered by the interactions between other females and males. In the fiddler crab Uca mjoebergi, males court mate-searching females by waving their one greatly enlarged claw. When a female approaches a male, he initiates high-intensity waving. We conducted one natural mate choice experiment and two mate choice experiments using custom-built robotic crabs. We show that the decision of one female to approach a group of males increases the probability that another female will approach and visit a male from the same group. We suggest that this behavior is best explained by the ‘stimulus enhancement’ hypothesis, where the presence of a female near a group of males makes them more likely to be detected by other females due to an increase in male display rate.     

Assessing landscape structure and pattern fragmentation in semiarid ecosystems using patch-size distributions

Spatial vegetation patterns are recognized as sources of valuable information that can be used to infer the state and functionality of semiarid ecosystems, particularly in the context of both climate and land use change. Recent studies have suggested that the patch-size distribution of vegetation in drylands can be described using power-law metrics, and that these scale-free distributions deviate from power-law linearity with characteristic scale lengths under the effects of increasing aridity or human disturbance, providing an early sign of desertification. These findings have been questioned by several modeling approaches, which have identified the presence of characteristic scale lengths on the patch-size distribution of semiarid periodic landscapes. We analyze the relationship between fragmentation of vegetation patterns and their patch-size distributions in semiarid landscapes showing different degree of periodicity (i.e., banding). Our assessment is based on the study of vegetation patterns derived from remote sensing in a series of semiarid Australian Mulga shrublands subjected to different disturbance levels. We use the patch-size probability density and cumulative probability distribution functions from both nondirectional and downslope analyses of the vegetation patterns. Our results indicate that the shape of the patch-size distribution of vegetation changes with the methodology of analysis applied and specific landscape traits, breaking the universal applicability of the power-law metrics. Characteristic scale lengths are detected in (quasi) periodic banded ecosystems when the methodology of analysis accounts for critical landscape anisotropies, using downslope transects in the direction of flow paths. In addition, a common signal of fragmentation is observed: the largest vegetation patches become increasingly less abundant under the effects of disturbance. This effect also explains deviations from power-law behavior in disturbed vegetation which originally showed scale-free patterns. Overall, our results emphasize the complexity of structure assessment in dryland ecosystems, while recognizing the usefulness of the patch-size distribution of vegetation for monitoring semiarid ecosystems, especially through the cumulative probability distributions, which showed high sensitivity to fragmentation of the vegetation patterns. We suggest that preserving large vegetation patches is a critical task for the maintenance of the ecosystem structure and functionality.     

Use of three bivalve species for biomonitoring a polluted estuarine environment

Estuaries are marine areas at great contamination risk due to their hydrodynamic features. PAH are wide and ubiquitous contaminants with a high presence in these marine environments. Chemical analysis of sediments can provide information, although it does not give a direct measure of the toxicological effect of such contaminants in the biota. Samples of Venerupis pullastra, Cerastoderma edule, and Mytilus galloprovincialis were collected from two locations in Corcubión estuary (Norhwest of Spain). The level of PAH in sediment and biota, and its possible origin were assessed. A moderate level of contamination was observed with a predominance of PAH of a pyrogenic origin. Genotoxic damage, measured as single-strand DNA breaks with the comet assay, was evaluated in gill tissue and in hemolymph. The values of DNA damage obtained showed a higher sensitivity of clams and cockles to the pollution load level. These differences among species make us suggest the use of some other species coupled with mussels as an optimal tool for biomonitoring estuarine environments.     

Production of plant growth–promoting bacteria inoculants from composting leachate to develop durable agricultural ecosystems

Environmental Science and Pollution Research - Composting process of residual organic material generates considerable amounts of liquid leachate which contains high organic load. This waste stream...     

Macro-fungal (Agaricus bisporus) wastes as an adsorbent in the removal of the acid red 97 and crystal violet dyes from ideal colored effluents

The wastes from the macro-fungus Agaricus bisporus were used as an eco-friendly and low-cost adsorbent for the treatment of colored effluents containing the recalcitrant dyes, acid red 97 (AR97) and crystal violet (CV). The macro-fungal waste presented an amorphous structure, composed of particles with different sizes and shapes. Also, it presents typical functional chemical groups of proteins and carbohydrates with a point of zero charge of 4.6. The optimum conditions for the dosage were found to be as follows: 0.5 g L⁻¹ with an initial pH at 2.0 for the AR97 and 8.0 for the CV. From the kinetic test, it was found that it took 210 min and an adsorption capacity of 165 mg g⁻¹ for the AR97. Concerning the CV kinetics, it took 120 min to reach the equilibrium and it achieved an adsorption capacity of 165.9 mg g⁻¹. The Elovich model was the most proper model for describing the experimental data, achieving an R² ≥ 0.997 and MSE ≤ 36.98 (mg g⁻¹)². The isotherm curves were best represented by the Langmuir model, predicting maximum adsorption capacity of 372.69 and 228.74 mg g⁻¹ for the AR97 and CV, respectively. The process was spontaneous and favorable for both dyes. The ∆H⁰ values were 9.53 and 10.69 kJ mol⁻¹ for AR97 and CV, respectively, indicating physical and endothermic adsorption. Overall, the wastes from Agaricus bisporus have the potential to adsorb cationic and anionic dyes, thus solving environmental problems related to water quality and residue disposal.