Moving from trends to benchmarks by using regression tree analysis to find inbreeding thresholds in a critically endangered bird

Understanding how inbreeding affects endangered species in conservation breeding programs is essential for their recovery. The Hawaiian Crow (‘Alalā) (Corvus hawaiiensis) is one of the world's most endangered birds. It went extinct in the wild in 2002, and, until recent release efforts starting in 2016, nearly all of the population remained under human care for conservation breeding. Using pedigree inbreeding coefficients (F), we evaluated the effects of inbreeding on Hawaiian Crow offspring survival and reproductive success. We used regression tree analysis to identify the level of inbreeding (i.e., inbreeding threshold) that explains a substantial decrease in ‘Alalā offspring survival to recruitment. Similar to a previous study of inbreeding in ‘Alalā, we found that inbreeding had a negative impact on offspring survival but that parental (vs. artificial) egg incubation improved offspring survival to recruitment. Furthermore, we found that inbreeding did not substantially affect offspring reproductive success, based on the assumption that offspring that survive to adulthood breed with distantly related mates. Our novel application of regression tree analysis showed that offspring with inbreeding levels exceeding F = 0.098 were 69% less likely to survive to recruitment than more outbred offspring, providing a specific threshold value for ongoing population management. Our results emphasize the importance of assessing inbreeding depression across all life history stages, confirm the importance of prioritizing parental over artificial egg incubation in avian conservation breeding programs, and demonstrate the utility of regression tree analysis as a tool for identifying inbreeding thresholds, if present, in any pedigree-managed population.     

Trophic ecology of the stomiid (Pisces: Stomiidae) fish assemblage of the eastern Gulf of Mexico: Strategies,selectivity and impact of a top mesopelagic predator group

The trophic ecology of the stomiid assemblage (Pisces, Stomiiformes, Stomiidae) in the eastern Gulf of Mexico, a region with physical and biological characteristics typical of oligotrophic low-latitude regimes, was investigated. Over 1400 specimens representing 69 species and 17 genera were examined. Four patterns of feeding were evident among the abundant stomiids: (1) myctophid predation; (2) zooplankton/small micronekton predation; (3) penaeidean shrimp predation; and (4) copepod/micronekton predation. One rare species preyed on cephalopods. Il was concluded that stomiids exhibited a high level of prey-selectivity, particularly considering the broad range of prey types available in the eastern Gulf of Mexico. The absence of numerically dominant potential prey (e.g.Cyclothone spp., sternoptychids) in the diets of piscivorous stomiids is possibly a function of feeding periodicity coupled with stomiid vertical migration. Stomiids may feed at night in the upper 200 m on vertically migrating myctophids while disregarding co-occurring nonmigrating prey during the daytime. Integration of stomiid abundance and diet data suggests that: (1) stomiids are the dominant upper trophic-level predators of the Gulf of Mexico mesopelagial, (2) stomiids inflict the highest predation impact on myctophids in low-latitude midwater ecosystems, and (3) the historic use of predation-avoidance arguments to explain certain mesopelagic phenomena (e.g. vertical migration, ventral photophores) appears to be substantiated by estimates of stomiid predation-impact. The stomiids may serve as key trophic mediators in the transfer of energy from the mesopelagial to the bathyand benthopelagial.     

Concentrations of ammonia and nitrogen dioxide at roadside verges, and their contribution to nitrogen deposition

Bimonthly integrated measurements of NO2 and NH3 have been made over one year at distances up to 10 m away from the edges of roads across Scotland, using a stratified sampling scheme in terms of road traffic density and background N deposition. The rate of decrease in gas concentrations away from the edge of the roads was rapid, with concentrations falling by 90% within the first 10 m for NH3 and the first 15 m for NO2. The longer transport distance for NO2 reflects the production of secondary NO2 from reaction of emitted NO and O3. Concentrations above the background, estimated at the edge of the traffic lane, were linearly proportional to traffic density for NH3 (microg NH3 m(-3) = 1 x 10(-4) x numbers of cars per day), reflecting emissions from three-way catalysts. For NO2, where emissions depend strongly on vehicle type and fuel, traffic density was calculated in terms of 'car equivalents'; NO2 concentrations at the edge of the traffic lane were proportional to the number of car equivalents (microg NO2 m(-3) = 1 x 10(-4) x numbers of car equivalents per day). Although absolute concentrations (microg m(-3)) of NH3 were five times smaller than for NO2, the greater deposition velocity for NH3 to vegetation means that approximately equivalent amounts of dry N deposition to road side vegetation from vehicle emissions comes from NH3 and NO2. Depending on traffic density, the additional N deposition attributable to vehicle exhaust gases is between 1 and 15 kg N ha(-1) y(-1) at the edge of the vehicle lane, falling to 0.2-10 kg N ha(-1) y(-1) at 10 m from the edge of the road.     

Long term changes in polychlorodibenzo-p-dioxin concentrations in wood treated with technical pentachlorophenol

Wood samples treated with technical pentachlorophenol (PCP), technical sodium pentachlorophenoxide (NaPCP) and octachlorodibenzo-p-dioxin have been exposed outdoors for periods up to $\text{2}\text{1}\text{2}$ years. Analysis of extracts from the samples show that photolytic reductive dechlorination of highly chlorinated dibenzo-p-dioxins to less chlorinated isomers occurs. However there is no discernible increase in polychlorodibenzo-p-dioxin concentrations in the technical PCP treated wood presumably because further photolytic reactions and volatilisation compete effectively with the photolytic formation. There is no evidence for formation of octachlorodibenzo-p-dioxin (OCDD) in technical PCP treated wood in this study, probably because photolytic destruction and volatilisation compete effectively with formation reactions when the initial OCDD concentration is relatively high.     

Parameters governing permeate flux in an anaerobic membrane bioreactor treating low-strength municipal wastewaters: a literature review.

The objective of this review was to conduct a comprehensive literature survey to identify the parameters that govern the permeate flux in an anaerobic membrane bioreactor (AnMBR) treating municipal wastewater. Based on the survey, research to date indicates that the optimal membrane system for an AnMBR consists of an organic, hydrophilic, and negatively charged membrane with a pore size of approximately 0.1 microm. The use of both external and submerged membrane configurations shows promise. The operating parameters that affect permeate flux in an external membrane system are transmembrane pressure (TMP) and cross-flow velocity. The operating parameters that affect permeate flux in a submerged membrane system are TMP, sparging intensity, and duration of the relaxation period. Both cross-flow velocity and sparging intensity impart a significant amount of shear force on the biomass in an AnMBR. High shear forces can reduce the microbial activity in an AnMBR. In addition, high shear forces can reduce the size of the biosolids in the mixed liquor and increase the release of soluble microbial products. In this respect, external and submerged membrane systems are expected to perform differently because the magnitude of the shear forces to which the biomass is exposed in an external membrane system is significantly greater than that in a submerged system. The size of the biosolid particles and concentration of soluble microbial products in the mixed liquor affect permeate flux. Higher concentrations of soluble microbial products may be present in the mixed liquor when an AnMBR is operated at relatively low operating temperatures. Aerobic polishing following anaerobic treatment can potentially significantly reduce the concentration of some components of the soluble microbial products in the mixed liquor. It is not possible to remove the foulant layer on an organic membrane with caustic cleaning alone. Acidic cleaning or acidic cleaning followed by caustic cleaning is required to remove the foulant layer. This suggests that both biological/organic and inorganic material contribute to membrane fouling.     

An investigation of aqueous activity coefficients at low concentrations

The activity of a chemical in solution determines its tendency to move into other media. At low concentrations (<0.01M) it is generally considered to be linearly related to concentration. A hypothetical model based on the structure of liquid water is discussed which could cause deviations from this linearity in the ppb region, a concentration much lower than that normally investigated thermodynamically, but one of great importance environmentally. Headspace experiments are reported with carbon tetrachloride and chloroform in water at concentrations down to ～10^?3 ppb but no such deviations were discerned.     

Measuring Eddy Covariance Fluxes of Ammonia Using Tunable Diode Laser Absorption Spectroscopy

Field measurements of NH3 fluxes using an eddy covariance technique were made for a total of 60 days between July and September 2002 at an intensively managed grassland in Southern Scotland. The collected data demonstrate the suitability of a tuneable diode laser absorption spectroscopy (TDLAS) system coupled with a sonic anemometer for eddy covariance measurements. The novelty of these measurements is the application to ammonia, which has only become measurable using TDLAS techniques recently, because of its small ambient concentration. Data presented in this paper show typical features of the fluxes and concentration for the summer season. NH3 concentration and flux values are in a similar range to previous studies using flux gradient methods at the same field site, although the particularly wet season reduced the concentration of NH₃ in the air. For an example day, measured NH₃ fluxes ranged between –11 and 44 ng m^–2 s^–1 with an average value of 3.78 ng m^–2 s^–1 indicating a small net emission from the vegetation. Spectral analysis executed on the data shows the percentage of flux carried by the small eddies (from 0.2 to 2 m) suggesting that high detection frequency instruments are particularly suitable for estimating NH₃ fluxes between atmosphere and vegetation.     

Detecting the signal of atmospheric N deposition in recent national-scale vegetation change across Britain

Model estimates of NO_y and NH_x deposition across Britain for 1996 (5 km square resolution) were applied as explanatory variables to account for national-scale, fine-grained changes in plant species composition between 1990 and 1998. Plant species data were recorded from up to 27 fixed plots located within a stratified random sample of 596 1 km². The response variable was a cover-weighted Ellenberg fertility score for each plot. Analyses were carried out separately for woodlands, semi-natural grasslands and heaths/bogs. Most of the variation in the botanical response variable occurred between plots within squares and so could not be explained by the model deposition data. NH_x deposition estimates accounted for significant, but small components of between 1 km² variation in the change in Ellenberg score in grasslands (5.6%) and heath/bogs (9.8%) but not woodlands. NO_y deposition estimates were not significantly associated with vegetation change. Linear models provided the best fit and the slope of the relationship was lower for heath/bogs than grasslands. Further signal attribution at sub-kilometre square scales requires the development of fine-grained models of N deposition that can be generalised across regional sampling domains.