不同森林土壤微生物群落对Biolog-GN板碳源的利用

应用Biolog方法研究了不同森林恢复类型（人工恢复的湿地松林、杉木林、油茶林和自然恢复的天然次生林）土壤微生物群落对Biolog-GN板不同类型碳源的利用情况,结果表明,自然恢复的天然次生林土壤微生物群落的碳源代谢能力比3种人工林强,其次是油茶林.4种森林类型土壤微生物群落比较偏好、利用率较高的3类碳源是糖类、羧酸类和氨基酸类.对4类森林恢复类型土壤微生物群落具有分异作用的主要碳源类型亦为糖类、羧酸类和氨基酸类,这3类碳源是研究森林恢复后导致土壤微生物群落变化的敏感碳源.     

Effects of vegetation type on soil microbial community structure and catabolic diversity assessed by polyphasic methods in North China

Soil microbes play a major role in ecological processes and are closely associated with the aboveground plant community.In order to understand the effects of vegetation type on the characteristics of soil microbial communities,the soil microbial communities were assessed by plate counts,phospholipid fatty acid (PLFA) and Biolog microplate techniques in five plant communities,i.e.,soybean field (SF),artificial turf (AT),artificial shrub (AS),natural shrub (NS),and maize field (MF) in Jinan,Shandong Province,North China.The results showed that plant diversity had little discernible effect on microbial biomass but a positive impact on the evenness of utilized substrates in Biolog microplate.Legumes could significantly enhance the number of cultural microorganisms,microbial biomass,and community catabolic diversity.Except for SF dominated by legumes,the biomass of fungi and the catabolic diversity of microbial community were higher in less disturbed soil beneath NS than in frequently disturbed soils beneath the other vegetation types.These results confirmed that high number of plant species,legumes,and natural vegetation types tend to support soil microbial communities with higher function.The present study also found a significant correlation between the number of cultured bacteria and catabolic diversity of the bacterial community.Different research methods led to varied results in this study.The combination of several approaches is recommended for accurately describing the characteristics of microbial communities in many respects.     

Effects of cotton straw amendment on soil fertility and microbial communities

Maintaining soil fertility, while controlling pollution from excessive chemical fertilizer application is important for keeping soil productivity of sustainable agriculture. Variety of straws have been used and proven to be good soil amendments for increasing soil organic matter (OM) and a range of additional soil nutrients. However, little is known about the utilization of cotton straw for soil amendment. To better understand the mechanism behind cotton straw soil amendments, investigations were performed upon cucumber seedlings, where changes to soil nutrients and microbial communities were investigated. The results revealed that the cotton straw application promoted the cucumber seedling growth by significantly increasing the soil OM, available nitrogen, available phosphorus, and available potassium. The concentration of cotton straw was positively correlated to both the number of the culturable microorganisms and also the total microbial biomass within soil. Furthermore, assessment of cotton straw application using Biolog metabolic profiling and phospholipid fatty acid analysis revealed that such application increased the microbial community metabolic activity, and markedly changed the structure of microbial community. 16S rRNA gene clone library construction and phylogenetic analysis of soil bacteria revealed γ- Proteobacteria sequences dominated the cotton straw amendment soil, comprising 27.8% of the total number of analyzed sequences, while they were less represented in control soil (13.4%). On the contrary, the Sphingobacteria (7.8%) and Verrucomicrobia (2.4%) in the cotton straw amendment soil decreased after application when compared to the control soil 15.2% and 15.2%.     

好氧堆肥微生物代谢多样性及其细菌群落结构

好氧堆肥是农业废弃物无害化处理和资源化利用的一条有效途径.为了探究好氧堆肥过程中微生物群落的代谢特征和细菌群落演替现象,了解起关键作用的微生物菌群,通过筛选强降解菌种改善堆肥工艺、提高堆肥效率,采用Biolog法和宏基因组法分析了玉米秸秆和牛粪联合好氧堆肥过程中微生物的碳源代谢能力和细菌群落多样性.结果表明:在第2次翻堆（第14天）时,微生物利用碳源的能力最强,初次建堆时（0 d）和其余翻堆时（第8、20、26天）次之,发酵结束时（第34天）最弱.Simpson、Shannon-Wiener和McIntosh多样性指数表明,建堆时及翻堆时的菌群优势度、丰富度和均匀度均极显著优于好氧堆肥结束.不同好氧发酵时间的微生物群落对同一碳源代谢有差异,同一好氧发酵时间微生物群落对不同碳源的利用率不同.糖类、酸类和醇类是区分好氧堆肥不同时间微生物碳源利用差异的敏感碳源.好氧堆肥不同时间细菌的种类和丰度不同,共享的优势菌门有厚壁菌门（Firmicutes）、变形菌门（Proteobacteria）、拟杆菌门（Bacteroidetes）、绿弯菌门（Chloroflexi）、放线菌门（Actinobacteria）和浮霉菌门（Planctomycetes）,在第0、8、14、20、26、34天这6个时间内它们的相对丰度之和分别达90.27%、90.34%、94.26%、84.21%、84.31%和77.61%,且6种门类在不同发酵时间的丰度表达存在消长变化状态.研究显示,参与好氧堆肥不同时间的微生物群落在碳源代谢能力上存在多样性,在细菌菌群的种类和丰度上也存在多样性.      

自然生物膜对水体中罗丹明B的净化与响应

以RhB(RhodamineB, 罗丹明B)为模型染料,研究了自然生物膜对RhB的去除,并分别使用Biolog和PLFA(磷脂脂肪酸)为技术手段和指标,探究RhB的存在对自然生物膜微生物群落结构和微生物碳源利用多样性的影响. 结果表明,第1天自然生物膜对水体中RhB的去除率为29.2%,之后几天的平均去除率降至3.9%左右;在测试期内RhB的总去除率达到68.6%. PLFA测定结果表明,RhB使自然生物膜中的PLFA总量减少了52.23%,其中细菌、真菌和放线菌的数量分别减少了75.81%、67.03%和100%. Biolog测定结果表明,低质量浓度的RhB降低了自然生物膜中微生物群落对碳源的利用能力,改变了生物膜微生物群落对31种碳源的利用情况,但RhB并没有对自然生物膜的微生物结构造成完全的破坏. 综上,自然生物膜作为一种自然水体中自生的微生物聚集体具有显著的生态学意义,其对低质量浓度的RhB具有一定的净化作用,但是RhB的存在也会对自然生物膜的结构和功能产生影响.      

黄顶菊（Flaveriabidentis）入侵对土壤微生物功能多样性的影响

外来植物入侵对土壤生物多样性的影响已成为生态学领域的研究热点之一。运用Biolog技术和氯仿熏蒸浸提法研究了黄顶菊入侵对土壤微生物群落功能多样性及土壤微生物量的影响。结果表明,黄顶菊入侵后土壤微生物代谢活性显著升高;土壤微生物群落平均吸光值（4WCD）的变化趋势为：入侵地根际土（RPs）〉入侵地根围土（Bs）〉未入侵地（CK）,且差异显著;而CK的功能多样性指数（日）高于BS,RPS亦高于Bs,差异均显著（P〈O．05）。主成分分析结果表明,黄顶菊入侵使土壤微生物群落的碳源利用方式和代谢功能发生改变。对不同碳源利用的分析结果表明,糖类、氨基酸类、羧酸类和聚合物为土壤微生物利用的主要碳源。入侵样地Bs和RPS的微生物量碳分别比CK高27．05％、121．52％;BS和RPS的微生物量氮分别比CK高37．40％、79．80％。相关性分析表明,AWCD与微生物量碳和微生物量氮均呈极显著正相关（P〈0．01）。由此可知,黄顶菊入侵增强了入侵地土壤微生物代谢活性,降低了土壤微生物群落的功能多样性,增加了土壤微生物量碳、氮水平。     

Trophic mode and organics metabolic characteristic of fungal community in swine manure composting

Fungal trophic modes and substrates utilization ability was observed in composting. Fungi had the higher diversity and more trophic types in thermophilic phase. Fungi had the higher metabolic potential in fresh swine manure and mature production. Redox potential, organics and moisture are main factors impacting fungal community. Composting reduced pathogenic fungi and enrich dung saprotroph fungi in swine manure. The succession of fungal community, trophic mode and metabolic characteristics were evaluated in 60 days composting of swine manure by high-throughput sequencing, FUNGuild and Biolog method, respectively. The result showed that the fungal community diversity reached to the highest level (76 OTUs) in the thermophilic phase of composting, then sustained decline to 15 OTUs after incubation. There were 10 fungal function groups in the raw swine manure. Pathotroph-saprotroph fungi reached to 15.91% on Day-10 but disappeared on Day-60. Dung saprotroph-undefined saprotroph fungi grown from 0.19% to 52.39% during the treatment. The fungal community had more functional groups but the lower substrate degradation rates in the thermophilic phase. The fungal communities on Day-0 and Day-60 had the highest degradation rates of amino acids and polymers, respectively. Redundancy analysis showed that ORP (49.6%), VS/Ash (45.3%) and moisture (39.2%) were the main influence factors on the succession of fungal community in the swine manure composting process.     

Effect of green manure amendment on herbicide pendimethalin on soil

Manure amendment in agricultural practice can have a large effect on herbicide dissipation because the period of manure plowing is close to the period of herbicide application. In addition, manure amendment is among the frequently encountered options in ameliorating pesticide pollution. In this research, the dissipation of the herbicide pendimethalin was examined after amendment with two common green manures, Lupinus luteus (L) or Cosmos bipinnatus (C), for 110 days in pH 5.2 and 7.7 soils (Sankengtzu [Sk] and Erhlin [Eh] soil, respectively). The microbial activity and ecology changes were examined by using Biolog EcoPlate and denaturing gradient gel electrophoresis (DGGE). In Sk soil, the half-lives of pendimethalin with L, C, and blank treatment were 49.0, 54.9, and 62.2 days, respectively, whereas that in Eh soil they were 46.3, 52.6, and 34.8 days, respectively. Pendimethalin dissipated quickly in more neutral soil (Eh soil), but the addition of manure can only increase the dissipation rate in acidic soil (Sk soil), indicating that the amendment of manures exerted different effect in pendimethalin dissipation rates in different pH soils. The application of pendimethalin and/or manure altered the microbial community activity after 24 h of incubation. After 110 days, the microbial community activities in green manure–amended soil were more similar to that with blank than pendimethalin treatment in both types of soils. In comparison with treatment C, microbial communities were more similar between treatment L and blank, indicating the superior effect over pendimethalin on microbial communities when applying Lupinus luteus. The research showed that the application of herbicide pendimethalin changed soil microbial community, and the amendment of manures exerted different effect in pendimethalin dissipation rates in different pH soils. It is assumed that the change in dissipation rates was originated from the microbial community change after different manure amendment.     

Persistence of the herbicide butachlor in soil after repeated applications and its effects on soil microbial functional diversity

Effects of repeated applications of the herbicide butachlor (N-(butoxymethyl)-2-chloro -N-2′,6′-dimethyl acetanilide) in soil on its persistence and soil microbial functional diversity were investigated under laboratory conditions. The degradation half-lives of butachlor at the recommended dosage in soil were calculated to be 12.5, 4.5, and 3.2 days for the first, second, and third applications, respectively. Throughout this study, no significant inhibition of the Shannon-Wiener index H′ was observed. However, the Simpson index 1/D and McIntosh index U were significantly reduced (P ≤ 0.05) during the initial 3 days after the first application of butachlor, and thereafter gradually recovered to a similar level to that of the control soil. A similar variation but faster recovery in 1/D and U was observed after the second and third Butachlor applications. Therefore, repeated applications of butachlor led to more rapid degradation of the herbicide, and more rapid recovery of soil microorganisms. It is concluded that repeated butachlor applications in soil had a temporary or short-term inhibitory effect on soil microbial communities.     

微生物多样性对土壤碳代谢特征的影响

土壤微生物群落在生态系统过程中发挥着重要的作用,而关于土壤微生物多样性对生态系统功能的影响无一致结论.为了研究微生物多样性对土壤碳代谢特征的影响,将稀释10~(-1)、10~(-3)和10~(-5)倍(D1、D3和D5)的庞泉沟阔叶混交林土壤悬浮液接种在灭菌的土样中.通过碱式滴定法和Biolog Eco板等实验方法测定了不同多样性梯度下土壤碳矿化速率和碳代谢利用模式的变化.结果表明培养6周后,D1处理的碳矿化速率、累积碳矿化量、平均孔颜色变化率(AWCD)和多样性指数(Shannon、Mc Intosh和丰富度指数)均显著高于D5处理.且相关分析表明,累积碳矿化量和AWCD与丰富度呈显著负相关.对碳源吸光度做主成分分析(PCA)和单因素方差分析发现微生物多样性梯度的土壤碳源利用模式也存在差异.因此,微生物多样性下降影响土壤的碳矿化速率和碳源利用模式,导致陆地生态系统的功能发生改变,在森林土壤管理中,应重视土壤微生物物种多样性变化对生态系统功能的影响.