A comparison of different lysis buffers to assess allele dropout from single cells for preimplantation genetic diagnosis

Single cell polymerase chain reaction (PCR) for preimplantation genetic diagnosis (PGD) requires high efficiency and accuracy. Allele dropout (ADO), the random amplification failure of one of the two parental alleles, remains the most significant problem in PCR-based PGD testing since it can result in serious misdiagnosis for compound heterozygous or autosomal dominant conditions. A number of different strategies (including the use of lysis buffers to break down the cell and make the DNA accessible) have been employed to combat ADO with varying degrees of success, yet there is still no consensus among PGD centres over which lysis buffer should be used (ESHRE PGD Consortium, 1999 ). To address this issue, PCR amplification of three genes (CFTR, LAMA3 and PKP1) at different chromosomal loci was investigated. Single lymphocytes from individuals heterozygous for mutations within each of the three genes were collected and lysed in either alkaline lysis buffer (ALB) or proteinase K/SDS lysis buffer (PK). PCR amplification efficiencies were comparable between alkaline lysis and proteinase K lysis for PCR products spanning each of the three mutated loci (ΔF508 in CFTR 90% vs 88%; R650X in LAMA3 82% vs 78%; and Y71X in PKP1 91% vs 87%). While there was no appreciable difference between ADO rates between the two lysis buffers for the LAMA3 PCR product (25% vs 26%), there were significant differences in ADO rates between ALB and PK for the CFTR PCR product (0% vs 23%) and the PKP1 PCR product (8% vs 56%). Based on these results, we are currently using ALB in preference to PK/SDS buffer for the lysis of cells in clinical PGD. Copyright © 2001 John Wiley & Sons, Ltd.     

Fluctuations of Population Size and Structure in the Northern Mole Vole: Preliminary Analysis

Long-term stationary studies on the ecology of the northern mole vole (Ellobius talpinus Pall.), performed by the mark–recapture method from 1985 to 1997, have provided original data on population dynamics and structure. The analysis shows that, to reveal cyclic fluctuations of population size in this species, the period of three years should be taken as a unit of time for estimating the duration of one phase. The 12-year population cycle in E. talpinus has four distinct phases: an increase, a peak, a decline, and a minimum. At each phase, the population is characterized by certain features of family structure, age composition, birth and death rates, and the composition of migrants.     

Isotope tracing of submarine groundwater discharge offshore Ubatuba, Brazil: results of the IAEA–UNESCO SGD project

Results of groundwater and seawater analyses for radioactive (³H, ²²²Rn, ²²³Ra, ²²⁴Ra, ²²⁶Ra, and ²²⁸Ra) and stable (D and ¹⁸O) isotopes are presented together with in situ spatial mapping and time series ²²²Rn measurements in seawater, direct seepage measurements using manual and automated seepage meters, pore water investigations using different tracers and piezometric techniques, and geoelectric surveys probing the coast. This study represents first time that such a new complex arsenal of radioactive and non-radioactive tracer techniques and geophysical methods have been used for simultaneous submarine groundwater discharge (SGD) investigations. Large fluctuations of SGD fluxes were observed at sites situated only a few meters apart (from 0 cm d⁻¹ to 360 cm d⁻¹; the unit represents cm³/cm²/day), as well as during a few hours (from 0 cm d⁻¹ to 110 cm d⁻¹), strongly depending on the tidal fluctuations. The average SGD flux estimated from continuous ²²²Rn measurements is 17 ± 10 cm d⁻¹. Integrated coastal SGD flux estimated for the Ubatuba coast using radium isotopes is about 7 × 10³ m³ d⁻¹ per km of the coast. The isotopic composition (δD and δ¹⁸O) of submarine waters was characterised by significant variability and heavy isotope enrichment, indicating that the contribution of groundwater in submarine waters varied from a small percentage to 20%. However, this contribution with increasing offshore distance became negligible. Automated seepage meters and time series measurements of ²²²Rn activity concentration showed a negative correlation between the SGD rates and tidal stage. This is likely caused by sea level changes as tidal effects induce variations of hydraulic gradients. The geoelectric probing and piezometric measurements contributed to better understanding of the spatial distribution of different water masses present along the coast. The radium isotope data showed scattered distributions with offshore distance, which imply that seawater in a complex coast with many small bays and islands was influenced by local currents and groundwater/seawater mixing. This has also been confirmed by a relatively short residence time of 1–2 weeks for water within 25 km offshore, as obtained by short-lived radium isotopes. The irregular distribution of SGD seen at Ubatuba is a characteristic of fractured rock aquifers, fed by coastal groundwater and recirculated seawater with small admixtures of groundwater, which is of potential environmental concern and has implications on the management of freshwater resources in the region.     

Fecal source tracking by antibiotic resistance analysis on a watershed exhibiting low resistance

The ongoing development of microbial source tracking has made it possible to identify contamination sources with varying accuracy, depending on the method used. The purpose of this study was to test the efficiency of the antibiotic resistance analysis (ARA) method under low resistance by tracking the fecal sources at Turkey Creek, Oklahoma exhibiting this condition. The resistance patterns of 772 water-isolates, tested with nine antibiotics, were analyzed by discriminant analysis (DA) utilizing a five-source library containing 2250 isolates. The library passed various representativeness tests; however, two of the pulled-sample tests suggested insufficient sampling. The resubstitution test of the library individual sources showed significant isolate misclassification with an average rate of correct classification (ARCC) of 58%. These misclassifications were explained by low antibiotic resistance (Wilcoxon test P < 0.0001). Seasonal DA of stream E. coli isolates for the pooled sources human/livestock/deer indicated that in fall, the human source dominated (P < 0.0001) at a rate of 56%, and that human and livestock respective contributions in winter (35 and 39%), spring (43 and 40%), and summer (37 and 35%) were similar. Deer scored lower (17–28%) than human and livestock at every season. The DA was revised using results from a misclassification analysis to provide a perspective of the effect caused by low antibiotic resistance and a more realistic determination of the fecal source rates at Turkey Creek. The revision increased livestock rates by 13–14% (0.04 ≤ P ≤ 0.06), and decreased human and deer by 6–7%. Negative misclassification into livestock was significant (0.04 ≤ P ≤ 0.06). Low antibiotic resistance showed the greatest effect in this category.     

Making Capacity Building Meaningful: A Framework for Strategic Action

This paper aims to give practical meaning to ‘capacity building’ through (a) identifying a suite of practical measures, such as mentoring or best practice guidelines, that have been shown to or are considered to build human, social, institutional, and economic capital; (b) placing these measures within a broader systems framework; and (c) exploring stakeholder feedback on specific measures to inform framework implementation. The 29 measures described provide actors, whether government or nongovernment, with a suite of practical investment choices for building capacity. These measures are then clustered into eight groups according to their primary purpose and placed within a systems framework. The framework provides a tool for actors with responsibilities for or an interest in capacity building to inform more holistic and strategic targeting of effort and investment. Stakeholder feedback gathered through surveys and workshops is subsequently reported to further inform implementation of specific measures within the framework’s eight groupings. The framework presented may be built upon through the identification and inclusion of further capacity building measures. The research is conducted within the context of decentralized governance arrangements for natural resource management (NRM), with specific focus on Australia’s recently formalized 56 NRM regions and their community-based governing boards as an informative arena of learning. Application of the framework is explored in the Australian setting through the identification and comparison of measures supported and most preferred by four major stakeholder groups, namely board members, regional NRM organization staff, policy/research interests, and Indigenous interests. The research also examines stakeholder perceptions of capacity issues, and whether these issues are likely to be addressed through implementing their preferred measures.

新疆石化工业区颗粒物含水量和酸度对二次无机组分形成的影响

大气二次污染物是新疆独山子区大气污染物的重要组成部分,研究大气中二次组分的转化过程对区域大气污染治理有着重要意义.对新疆独山子区2015年9月至2016年7月采集到的样品进行水溶性组分分析.结果表明,水溶性无机离子(TWSIs)表现出与PM_(2.5)一致的季节变化,为冬季(67.86μg·m~(-3))秋季(13.77μg·m~(-3))春季(10.09μg·m~(-3))夏季(4.85μg·m~(-3));冬季二次无机离子(NH~+_4、SO~(2-)_4和NO~-_3)占TWSIs的98%;结合气溶胶热力学模型(E-AIM)探讨独山子区大气颗粒污染物中颗粒相含水量以及颗粒酸碱性;表明独山子区颗粒物呈酸性,年均原位pH为0.81,其中冬季样品的pH(2.93)值最高;颗粒含水季节变化为冬季(331.32μg·m~(-3))秋季(5.91μg·m~(-3))春季(5.46μg·m~(-3))夏季(1.62μg·m~(-3));年均氮氧化率(NOR)和硫氧化率(SOR)分别为0.13和0.47,表明区域污染物存在二次转化;进一步分析表明颗粒相中的硫酸盐质量浓度受到颗粒含水量和颗粒酸碱度的影响较为明显;高的颗粒相含水条件下区域硝酸盐的形成主要以非均相反应为主.     

郑州市春季大气污染过程VOCs特征、臭氧生成潜势及源解析

利用GC5000在线气相色谱仪于2018年4月15日～5月15日对郑州市城区环境大气挥发性有机物(VOCs)进行监测,开展其污染特征、臭氧生成潜势(OFP)和来源解析研究.结果表明,监测期间,郑州市春季VOCs平均体积分数为40.26×10~(-9),非污染日和污染日VOCs平均体积分数分别为35.82×10~(-9)和44.12×10~(-9),污染日相较非污染日增长23%;VOCs物种对OFP的贡献表现为烯烃芳香烃烷烃炔烃;源解析结果显示监测期间郑州市VOCs主要来源是LPG源(66.05%)、机动车源(47.39%)、工业溶剂源(37.51%)、燃烧源(37.80%)和植物排放源(11.25%),且污染日的LPG源和植物排放源的贡献率较非污染日增长22.92%和68.50%.     

岗南水库沉积物间隙水有色溶解有机物的时空分布特征及差异分析

有色可溶性有机物(CDOM)作为溶解性有机物的重要组分,影响着水体中污染物质的形态特征和迁移转化过程.本研究运用紫外-可见光谱技术(UV-vis)以及三维荧光光谱(EEMs)技术结合平行因子分析法(PARAFAC),对岗南水库自入库河口到坝前主库区四季演变过程中沉积物间隙水CDOM的分布、光谱特征以及来源进行解析.结果表明,岗南水库沉积物间隙水CDOM的相对浓度a_(254)、a_(260)、a_(280)和a_(355)存在显著的季节差异,并且相对浓度大小为夏季春季秋季冬季;沉积物间隙水CDOM的E2/E3、E3/E4、E4/E6以及S_R存在显著的季节差异,呈现冬季高夏季低的特征;秋冬季的E2/E3以及E3/E4明显高于春夏季,并且秋冬季的E3/E4大部分均大于3.5,表明秋冬季沉积物间隙水CDOM具有更小的分子量和更低的腐殖化程度;三维荧光光谱通过PARAFAC解析出3种组分,分别为类酪氨酸(C1)、短波类富里酸(C2)和降解的腐殖类物质(C3),并且3种荧光组分间具有显著的正相关性(P0.001);岗南水库沉积物间隙水的CDOM总荧光强度和各荧光组分荧光强度呈现显著的季节差异,总荧光强度以及各组分的荧光强度呈现春季的最高、秋冬季次之、夏季最低的分布特征;秋冬季各个荧光组分占比不存在显著差异,春夏季各个荧光组分占比不存在显著差异,秋冬季与春夏季各个荧光组分占比存在显著差异;秋冬季沉积物间隙水CDOM生物源指数(BIX)和荧光指数(FI)均高于春夏季,表明秋冬季CDOM的自生源强于春夏季,与腐殖程度指标(HIX)的结果相吻合;PCA结合Adonis分析显示沉积物间隙水CDOM的光谱特征呈现显著的季节差异(P0.001);并且组分C1、C2、C3以及水质参数[氨氮、硝氮、亚硝氮、溶解性总氮以及溶解性总磷]均有很好的线性回归方程.综上,通过对岗南水库沉积物间隙水CDOM光谱特征进行研究,可以为分析岗南水库有机物污染特征和水质管理提供技术支持.