Integration of microbial reductive dehalogenation with persulfate activation and oxidation (Bio-RD-PAO) for complete attenuation of organohalides

•Bio-RD-PAO can effectively and extensively remove organohalides. •Bio-RD alone effectively dehalogenate the highly-halogenated organohalides. •PAO alone is efficient in degrading the lowly-halogenated organohalides. •The impacts of PAO on organohalide-respiring microbial communities remain elusive. •Bio-RD-PAO provides a promising solution for remediation of organohalide pollution. Due to the toxicity of bioaccumulative organohalides to human beings and ecosystems, a variety of biotic and abiotic remediation methods have been developed to remove organohalides from contaminated environments. Bioremediation employing organohalide-respiring bacteria (OHRB)-mediated microbial reductive dehalogenation (Bio-RD) represents a cost-effective and environmentally friendly approach to attenuate highly-halogenated organohalides, specifically organohalides in soil, sediment and other anoxic environments. Nonetheless, many factors severely restrict the implications of OHRB-based bioremediation, including incomplete dehalogenation, low abundance of OHRB and consequent low dechlorination activity. Recently, the development of in situ chemical oxidation (ISCO) based on sulfate radicals (SO₄^·−) via the persulfate activation and oxidation (PAO) process has attracted tremendous research interest for the remediation of lowly-halogenated organohalides due to its following advantages, e.g., complete attenuation, high reactivity and no selectivity to organohalides. Therefore, integration of OHRB-mediated Bio-RD and subsequent PAO (Bio-RD-PAO) may provide a promising solution to the remediation of organohalides. In this review, we first provide an overview of current progress in Bio-RD and PAO and compare their limitations and advantages. We then critically discuss the integration of Bio-RD and PAO (Bio-RD-PAO) for complete attenuation of organohalides and its prospects for future remediation applications. Overall, Bio-RD-PAO opens up opportunities for complete attenuation and consequent effective in situ remediation of persistent organohalide pollution.     

Acid Orange 7 degradation using methane as the sole carbon source and electron donor

• AO7 degradation was coupled with anaerobic methane oxidation. • Higher concentration of AO7 inhibited the degradation. • The maximum removal rate of AO7 reached 280 mg/(L·d) in HfMBR. • ANME-2d dominated the microbial community in both batch reactor and HfMBR. • ANME-2d alone or synergistic with the partner bacteria played a significant role. Azo dyes are widely applied in the textile industry but are not entirely consumed during the dyeing process and can thus be discharged to the environment in wastewater. However, azo dyes can be degraded using various electron donors, and in this paper, Acid Orange 7 (AO7) degradation performance is investigated using methane (CH₄) as the sole electron donor. Methane has multiple sources and is readily available and inexpensive. Experiments using ¹³C-labeled isotopes showed that AO7 degradation was coupled with anaerobic oxidation of methane (AOM) and, subsequently, affected by the initial concentrations of AO7. Higher concentrations of AO7 could inhibit the activity of microorganisms, which was confirmed by the long-term performance of AO7 degradation, with maximum removal rates of 8.94 mg/(L·d) in a batch reactor and 280 mg/(L·d) in a hollow fiber membrane bioreactor (HfMBR). High-throughput sequencing using 16S rRNA genes showed that Candidatus Methanoperedens, affiliated to ANME-2d, dominated the microbial community in the batch reactor and HfMBR. Additionally, the relative abundance of Proteobacteria bacteria (Phenylobacterium, Pseudomonas, and Geothermobacter) improved after AO7 degradation. This outcome suggested that ANME-2d alone, or acting synergistically with partner bacteria, played a key role in the process of AO7 degradation coupled with AOM.     

Kinetic modeling of microbially-driven redox chemistry of radionuclides in subsurface environments: coupling transport, microbial metabolism and geochemistry

Microbial reactions play an important role in regulating pore water chemistry as well as secondary mineral distribution in many subsurface systems and, therefore, may directly impact radionuclide migration in those systems. This paper presents a general modeling approach to couple microbial metabolism, redox chemistry, and radionuclide transport in a subsurface environment. To account for the likely achievement of quasi-steady state biomass accumulations in subsurface environments, a modification to the traditional microbial growth kinetic equation is proposed. The conditions for using biogeochemical models with or without an explicit representation of biomass growth are clarified. Based on the general approach proposed in this paper, the couplings of uranium reactions with biogeochemical processes are incorporated into computer code BIORXNTRN Version 2.0. The code is then used to simulate a subsurface contaminant migration scenario, in which a water flow containing both uranium and a complexing organic ligand is recharged into an oxic carbonate aquifer. The model simulation shows that Mn and Fe oxyhydroxides may vary significantly along a flow path. The simulation also shows that uranium(VI) can be reduced and therefore immobilized in the anoxic zone created by microbial degradation.     

Microbial responses to the use of NaClO in sediment treatment

• Chlorine addition enhanced the release of TOC, TN from the sediment. • Chlorine has a long-term negative effect on microbial richness. • Usually enzymes lose activity, and expression of genes was downregulated. • Carbon degradation and nitrification might be strongly inhibited. Chlorine is often used in algal removal and deodorization of landscape waters, and occasionally used as an emergency treatment of heavily polluted sediments. However, the ecological impact of this practice has not been fully studied and recognized. In this study, NaClO at 0.1 mmol/g based on dry weight sediment was evenly mixed into the polluted sediment, and then the sediment was incubated for 150 days to evaluate its microbial effect. Results showed that NaClO addition enhanced the release of TOC, TN, Cr and Cu from the sediment. The microbial richness in the examined sediment decreased continuously, and the Chao1 index declined from 4241 to 2731, in 150 days. The microbial community composition was also changed. The abundance of Proteobacteria and Bacteroidetes increased to 54.8% and 4.2% within 7 days compared to the control, and linear discriminant analysis (LDA) showed gram-negative bacteria and aerobic bacteria enriched after chlorination. The functional prediction with PICRUSt2 showed the functions of the microbial community underwent major adjustments, and the metabolic-related functions such as carbon metabolism, including pyruvate and methane metabolisms were significantly inhibited; besides, 15 out of 22 analyzed key enzymes involved in C cycling and 6 out of 12 key enzymes or genes involved in N cycling were strongly impacted, and the enzymes and genes involved in carbon degradation and denitrification showed remarkable downregulation. It can be concluded that chlorination posed a seriously adverse effect on microbial community structure and function. This study deepens the understanding of the ecological effects of applying chlorine for environmental remediation.     

Bioaerosol emissions variations in large-scale landfill region and their health risk impacts

● The airborne bacteria in landfills were 4–50 times higher than fungi. ● Bioaerosols released from the working area would pose risk to on-site workers. ● The safe distance for the working area should be set as 80 m. Landfills are widely complained about due to the long-term odor and landfill gas emissions for local residents, while the bioaerosols are always neglected as another threat to on-site workers. In this study, bioaerosols samples were collected from the typical operation scenes in the large-scale modern landfill, and the emission levels of airborne bacteria, pathogenic species, and fungi were quantified and co-related. The corresponding exposure risks were assessed based on the average daily dose via inhalation and skin contact. It was found that the levels of culturable bacteria and fungi in all landfill samples were around 33–22778 CFU/m³ and 8–450 CFU/m³, and the active-working landfill area and the covered area were the maximum and minimum emission sources, respectively, meaning that the bioaerosols were mainly released from the areas related with the fresh waste operation. Acinetobacter sp., Massilia sp., Methylobacterium-Methylorubrum sp. and Noviherbaspirillum sp. were the main bacterial populations, with a percentage of 42.56%, 89.82%, 70.24% and 30.20% respectively in total bioaerosols measured. With regards to the health risk, the health risks via inhalation were the main potential risks, with four orders of magnitude higher than that of skin contact. Active-working area showed the critical point for non-carcinogenic risks, with a hazard quotient of 1.68, where 80 m protection distance is recommended for on-site worker protection, plus more careful protection measures.     

Water-dispersible nano-pollutions reshape microbial metabolism in type-specific manners: A metabolic and bacteriological investigation in Escherichia coli

• Water-dispersible nano-pollutions exhibit type-specific toxic effects on E. coli. • Global metabolite profiling was used to characterize metabolic disruption patterns. • Key dysregulated metabolites responsive to nano-pollution exposures were found. • Amino acid metabolism and purine metabolism are perturbed at nano-pollutions. Incomplete separation and recycling of nanoparticles are causing undesirable nanopollution and thus raising great concerns with regard to nanosafety. Since microorganisms are important regulator of physiological processes in many organisms, the interaction between nanopollution and microbial metabolomics and the resultant impact on the host’s health are important but unclear. To investigate how typical nanopollution perturbs microbial growth and metabolism, Escherichia coli (E. coli) in vitro was treated with six water-dispersible nanomaterials (nanoplastic, nanosilver, nano-TiO₂, nano-ZnO, semiconductor quantum dots (QDs), carbon dots (CDs)) at human-/environment-relevant concentration levels. The nanomaterials exhibited type-specific toxic effects on E. coli growth. Global metabolite profiling was used to characterize metabolic disruption patterns in the model microorganism exposed to different nanopollutants. The percentage of significant metabolites (p<0.05, VIP>1) accounted for 6%–38% of the total 293 identified metabolites in each of the nanomaterial-contaminated bacterial groups. Metabolic results also exhibited significant differences between different nanopollutants and dose levels, revealing type-specific and untypical concentration-dependent metabolic responses. Key metabolites responsive to nanopollution exposures were mainly involved in amino acid and purine metabolisms, where 5, 4, and 7 significant metabolic features were included in arginine and proline metabolism, phenylalanine metabolism, and purine metabolism, respectively. In conclusion, this study horizontally compared and demonstrated how typical nanopollution perturbs microbial growth and metabolomics in a type-specific manner, which broadens our understanding of the ecotoxicity of nanopollutants on microorganisms.     

Seasonal variation of microbial populations and biomass in Tatachia grassland soils of Taiwan

To investigate the seasonal variations of microbial ecology in grassland of Tatachia forest, soil properties, microbial populations, microbial biomass, and 16S rDNA clone library analysis were determined. The soil had temperatures 6.6–18.4°C, pH 3.6–5.1, total organic carbon 1.11–10.68%, total nitrogen 0.18–0.78%, and C/N ratios 3.46–20.55. Each gram of dry soil contained bacteria, actinomycetes, fungi, cellulolytic, phosphate-solubilizing microbes, and nitrogen-fixing microbes 4.54 × 10⁴ to 3.79 × 10⁷, 3.43 × 10² to 2.17 × 10⁵, 5.74 × 10³ to 3.76 × 10⁶, 1.97 × 10³ to 1.34 × 10⁶, 8.49 × 10² to 5.59 × 10⁵, and 3.86 × 10² to 3.75 × 10⁵ CFU, respectively. Each gram of soil contained 117–2,482 μg of microbial biomass carbon, 23–216 μg of microbial biomass nitrogen and 9–29 μg of DNA. The microbial populations, microbial biomass, and DNA decreased stepwise with the depth of soil, and they had low values in winter seasons. The microbial populations, microbial biomass carbon, microbial biomass nitrogen, and DNA at the BW2 horizon were 8.42–17.84, 19.26–64.40, 16.84–61.11, and 31.03–46.26% of those at the O horizon, respectively. When analyzing 16S rDNA library, members of Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, candidate division TM1, candidate division TM7, Gammatimonadetes, and Verrucomicrobia were identified. Members of Proteobacteria (44.4%) and Acidobacteria (33.3%) dominated the clone libraries. Within the phylum Proteobacteria, α-, β-, and γ-Proteobacteria were most numerous, followed by δ-Proteobacteria.     

SBR法处理麻生物脱胶废水

利用 SBR工艺处理麻生物脱胶废水 ,对 CODcr、NH3-N的降解、SBR厌氧段和处理后水是否可回用进行了研究。实验结果证明 ,当进水 CODcr 15 0 0 mg/ L左右 ,MLSS的 CODcr负荷≤ 0 .74kg/ kg· d时 ,废水各项指标均可以达到 GB8978-1996苎麻脱胶废水综合排放二级标准 ,且可回用脱胶     

Polymer Mineralization in Soils: Effects of Cold Storage on Microbial Populations and Biodegradation Potential

Soil retrieval, processing and storage procedures can have a profound effect on soil microorganisms. In particular, changes in soil microbial populations may adversely affect the biological activity of a soil and drastically alter the soil's potential to mineralize added substrates. The effects of cold storage on the biodegradation of a series of test polymers was investigated using two soils—a synthetic soil mix (SM-L8) and a field soil (Bridgehampton silt loam) from Rhode Island (RI-1). Biodegradation tests were conducted using freshly prepared/collected soil and again following storage at 4°C for 3 to 8 months. Prior to each biodegradation test, the soils were incubated at 60% water-holding capacity (WHC) and 25°C to rejuvenate the microbial populations; the soils were incubated for periods of 48 h (freshly collected soil) or 25 days (soils stored at 4°C). Soil microbial populations were assessed by enumerating different segments of the population on agar plates containing different selective media. Mineralization of the test polymers (cellulose, poly-3-hydroxybutyrate, and starch acetate, d.s. 1.5) was monitored using standard respirometric techniques. Our results demonstrated that cold storage had a generally negative effect on the soil microbial populations themselves but that its effect on the capacity of the soil microorganisms to degrade the test polymers varied between soils and polymer type. Whereas cold storage resulted in dramatic shifts in the community structure of the soil microbial populations, substantial restoration of these populations was possible by first conditioning the soils at 60% WHC and ambient temperatures for 25 days. Likewise, although the effects of cold storage on polymer mineralization varied with the test polymer and soil, these effects could be largely offset by including an initial 25-day stabilization period in the test.     

Validation of Bacteroidales-based microbial source tracking markers for pig fecal pollution and their application in two rivers of North China

• Pig feces is the predominant excrement produced by animal husbandry in China. • The PF, Pig-1-Bac^TaqMan, and Pig-2-Bac^TaqMan MST assays showed better performance. • The pig-specific MST assays can contribute to managing the pig fecal pollution. In China, pig feces is the predominant source of excrement produced by animal husbandry. Improper use or direct discharge of pig feces can result in contamination of natural water systems. Microbial source tracking (MST) technology can identify the sources of fecal pollution in environmental water, and contribute to the management of pig fecal pollution by local environmental protection agencies. However, the accuracy of such assays can be context-dependent, and they have not been comprehensively evaluated under Chinese conditions. We aimed to compare the performance of five previously reported pig-specific MST assays (PF, Pig-Bac1^SYBR, Pig-Bac2^SYBR, Pig-1-Bac^TaqMan, and Pig-2-Bac^TaqMan, which are based on Bacteroidales 16S rRNA gene markers) and apply them in two rivers of North China. We collected a total of 173 fecal samples from pigs, cows, goats, chickens, humans, and horses across China. The PF assay optimized in this study showed outstanding qualitative performance and achieved 100% specificity and sensitivity. However, the two SYBR green qPCR assays (Pig-Bac1^SYBR and Pig-Bac2^SYBR) cross-reacted with most non-pig fecal samples. In contrast, both the Pig-1-Bac^TaqMan and Pig-2-Bac^TaqMan assays gave 100% specificity and sensitivity. Of these, the Pig-2-Bac^TaqMan assay showed higher reproducibility. Our results regarding the specificity of these pig-specific MST assays differ from those reported in Thailand, Japan, and America. Using the PF and Pig-2-Bac^TaqMan assays, a field test comparing the levels of pig fecal pollution in rivers near a pig farm before and after comprehensive environmental pollution governance indicated that pig fecal pollution was effectively controlled at this location.