Natural and Artificial Functionalized Biopolyesters. II. Medium-Chain Length Polyhydroxyoctanoates from Pseudomonas Strains

Sixteen Pseudomonas strains have been tested with a view to developing medium-chain length polyhydroxyalkanoates. Four strains were selected and it is shown that their ability for producing three different polyesters with variable properties was dependent on the strains and substrates. Otherwise, Pseudomonas oleovorans was grown on a mixture of sodium octanoate and undecenoate salts at a 90/10 mol/mol ratio. The corresponding copolymer, bearing lateral double bonds, was chemically modified in the carboxy group. Finally, the ability to tailor-make functional bacterial polyesters aimed at temporary therapeutic applications is demonstrated.     

Methodology to translate policy assessment problems into scenarios: the example of the SEAMLESS integrated framework

Scenario-based approaches in environmental and policy assessment studies are increasingly applied within integrated assessment and modelling frameworks. The SEAMLESS project develops such an integrated framework (SEAMLESS-IF) aiming to assess, ex-ante, impacts of alternative agro-environmental policies on the sustainability of agricultural systems. A particular challenge in this context is the consistent translation of a wide range of policy questions into scenarios that a modelling framework can assess. The present work defines a methodology for scenario-development in integrated policy assessment with specific emphasis on SEAMLESS-IF. After a general overview on scenario concepts for integrated policy assessment the adopted scenario concept and its development procedure is presented. They allow building integrated scenarios capturing the range of drivers of the assessed agricultural system in a consistent way across temporal and spatial scales. Then focus is on the particular procedures to translate the policy assessment questions into scenario parameters and to implement these parameters into SEAMLESS-IF. Two examples targeted at European and regional level combining integrated assessments of policy changes and technological innovations are considered to illustrate the SEAMLESS scenario concept. We conclude that the proposed methodology to translate policy assessment problems into scenarios effectively supports integrated assessment in SEAMLESS-IF or even in other modelling frameworks.     

Seasonal dynamics of freshwater pathogens as measured by microarray at Lake Sapanca,a drinking water source in the north-eastern part of Turkey

Monitoring drinking water quality is an important public health issue. Two objectives from the 4 years, six nations, EU Project μAqua were to develop hierarchically specific probes to detect and quantify pathogens in drinking water using a PCR-free microarray platform and to design a standardised water sampling program from different sources in Europe to obtain sufficient material for downstream analysis. Our phylochip contains barcodes (probes) that specifically identify freshwater pathogens that are human health risks in a taxonomic hierarchical fashion such that if species is present, the entire taxonomic hierarchy (genus, family, order, phylum, kingdom) leading to it must also be present, which avoids false positives. Molecular tools are more rapid, accurate and reliable than traditional methods, which means faster mitigation strategies with less harm to humans and the community. We present microarray results for the presence of freshwater pathogens from a Turkish lake used drinking water and inferred cyanobacterial cell equivalents from samples concentrated from 40 into 1 L in 45 min using hollow fibre filters. In two companion studies from the same samples, cyanobacterial toxins were analysed using chemical methods and those dates with highest toxin values also had highest cell equivalents as inferred from this microarray study.     

Detection of Human Enteric Viruses in Freshwater from European Countries

The transmission of water-borne pathogens typically occurs by a faecal–oral route, through inhalation of aerosols, or by direct or indirect contact with contaminated water. Previous molecular-based studies have identified viral particles of zoonotic and human nature in surface waters. Contaminated water can lead to human health issues, and the development of rapid methods for the detection of pathogenic microorganisms is a valuable tool for the prevention of their spread. The aims of this work were to determine the presence and identity of representative human pathogenic enteric viruses in water samples from six European countries by quantitative polymerase chain reaction (q-PCR) and to develop two quantitative PCR methods for Adenovirus 41 and Mammalian Orthoreoviruses. A 2-year survey showed that Norovirus, Mammalian Orthoreovirus and Adenoviruses were the most frequently identified enteric viruses in the sampled surface waters. Although it was not possible to establish viability and infectivity of the viruses considered, the detectable presence of pathogenic viruses may represent a potential risk for human health. The methodology developed may aid in rapid detection of these pathogens for monitoring quality of surface waters.     

Disentangling the effects of local and regional factors on the thermal tolerance of freshwater crustaceans

In the global warming context, we compared the thermal tolerance of several populations of the crustacean Gammarus pulex (Amphipoda: Gammaridae) along a latitudinal thermal gradient in the Rh?ne Valley. To disentangle the effect of regional (North vs. South) and local (site-specific) factors, the ecophysiological responses of populations were investigated at two levels of biological organisation: whole organism level considering body size [critical thermal maximum (CTmax), mean speed of locomotion (MS), time mobile (TM)] and organelle function level [mitochondrial respiratory control ratios (RCRs)]. CTmax and RCRs, but not MS and TM, revealed a significantly higher thermal tolerance in southern populations compared to northern ones. Nevertheless, temperatures ≥ 30°C were deleterious for all populations, suggesting that populations located in the warmer limit of the species distribution will be more threatened by climate change as they live closer to their upper thermal limits. The strong differences observed between populations indicate that the species-level thermal tolerance used in predictive models may not be informative enough to study the impact of global warming on species distributions. This work also reveals that an appropriate choice of indicators is essential to study the consequences of global warming since the response of organisms at the whole body level can be influenced by local conditions.     

Estimating biological half-lifes of radionuclides in marine compartments from environmental time-series measurements

Modelling radionuclide transfers between seawater and marine species on a short time scale basis requires being able to take into account the transfer kinetics. This means (1) to implement the effect of the biological half-lives of radionuclides together with the concentration factor in the calculation of transfers and (2), to get these kinetic parameters for each element and species. Biological half-lives are usually determined from laboratory labelling experiments with the challenge to match natural environmental conditions. The present work proposes a simple model that implements the effect of kinetic parameters in the calculation of transfers. This model is also used to derive the biological half-life and the concentration factor for 137Cs from time-series measurements of environmental concentrations in seawater and in the brown alga Fucus serratus, as an example. These transfer parameters are finally used to predict the Cs activities in Fucus serratus on the English Channel shores.     

Multi-elemental compound-specific isotope analysis of pesticides for source identification and monitoring of degradation in soil: a review

Environmental Chemistry Letters - The transfer of pesticides from agricultural soils to food and drinking water is a major health issue. There are actually few robust methods to identify,...