An object oriented modelling strategy to depict activity pattern of organisms in heterogeneous environments

The object oriented programming and simulation approach has been used at the Project Center for Ecosystems Research (Kiel) in order to advance ecological theory and in order to integrate empirical ecological field work. In this contribution we present a general scheme, which provides a framework for the development of individual based models. The scheme covers a general layout of the organism – environment interaction; the organization of (quasi‐)parallel activities of individuals (self‐scheduling of objects versus list processing); a concept to coordinate context specific activity alternatives. Basing on these considerations we give different application examples. These examples show the potential of individual based modelling to depict the modification of organismic activity pattern and population dynamics in heterogeneous environments and to study the interaction of different levels of aggregation. The model examples are simulation of a fish school in a changing environment; simulation of a robin population in a beech forest; simulation of plant development.     

Comparing measured and modelled forest carbon stocks in high-boreal forests of harvest and natural-disturbance origin in Labrador, Canada

Understanding the effects of disturbance regimes on carbon (C) stocks and stock changes is a prerequisite to estimating forest C stocks and fluxes. Live-tree, dead-tree, woody debris (WD), stump, buried wood, organic layer, and mineral soil C stock data were collected from high-boreal black spruce (Picea mariana (Mill.) B.S.P.) stands of harvest and fire origin and compared to values predicted by the Carbon Budget Model of the Canadian Forest Sector (CBM-CFS3); the core model of Canada's National Forest Carbon Monitoring, Accounting and Reporting System. Data comparing the effect of natural and anthropogenic disturbance history on forest C stocks are limited, but needed to evaluate models such as the CBM-CFS3. Results showed that adjustments to the CBM-CFS3 volume-to-biomass conversion and partitioning parameters were required for the non-merchantable and branch C pools to accurately capture live-tree C stocks in the studied black spruce ecosystems. Accuracy of the CBM-CFS3 modelled estimates of dead organic matter and soil C pools was improved relative to regional default parameters by increased snag fall and >10 cm WD base decay rates. The model evaluation process also highlighted the importance of developing a bryophyte module to account for bryophyte C dynamics and the physical burial of woody debris by bryophytes. Modelled mineral soil C estimates were improved by applying a preliminary belowground slow C pool base decay rate optimized for the soil type of the studied sites, Humo-Ferric Podzols.     

Translocation and Growth Experiments with the Macropohyte Potamogeton Lucens L. in Traunsee (Austria), with Respect to Industrial Tailings

The absence of Potamogeton lucens L. in an area of Traunsee, Austria, which is heavily impacted by industrial sludges was related to these deposits. The hypothesis that P. lucens L. is affected by the industrial tailings was confirmed by growth experiments of the translocated plants in the field. At the unpolluted reference site of the lake, the plants grew better, they were longer and produced more leaves than at the emission site.     

Microbial spheres: a novel cyanobacterial–diatom symbiosis

Cyanobacteria, algae and bacteria are widespread inhabitants of North Sea microbial mats. Our studies of these populations showed uncommon modes of living and extraordinary structures, which have not been described before. The structures are spherical objects covering a community of cyanobacteria, diatoms and bacteria. The cultivation of these communities in the laboratory and intensive observations of their exceptional movement has led to some spectacular findings. The sphere formations go through different phases with variation in the dominance of different microorganisms. The role of the bacteria is the most important in the first phase, and can be increased by the addition of signal substances. Spheres surrounded by envelopes of unknown composition and permeability appear, with numerous bacteria and sporadic diatoms inside. Then the cyanobacteria penetrate the spheres and arrange themselves at the surface. The communities proliferate over some weeks and are finally released. Laboratory expositions of the microbial communities to different parameters pinpoint the limits of sphere formation. The metabolic products of the sphere communities are concentrated in the spheres and lead to a different kind of compound compared with the surrounding environment. In this way, the microbial communities strongly influence the structure of the sediments. Uncommon circular structures, which develop into spheres between 0.08 and 3 mm in size were found in subcultures of non-axenic filamentous cyanobacteria enrichments from North Sea microbial mats. These filamentous cyanobacteria (Phormidium sp.) together with associated benthic diatoms of the genus Navicula and associated heterotrophic bacteria were held as reproducible synergistic cultures. Phormidium sp. filaments tightly intertwined with each other, formed the surface of the spheres, trapping diatoms inside. The formation of "spheres" was the result of radial and synchronous movements of the cyanobacteria. In old cultures, the direction of the cyanobacterial movement has turned in the opposite direction, away from the sphere. The integrity of large "spheres" was influenced by chemotactic phenomena and maintained by some type of trichome-trichome interaction. This suggests the presence of metabolic secondary products, which attract cyanobacteria and influence their movement in a form of chemotactic response.     

Characteristic Properties of Novel Organosolv Lignin/Polylactide/Delta-Valerolactone Terpolymers

Compostable terpolymers of l-lactide (LLA), delta-valerolactone (DVL), and switchgrass organosolv lignin (OSL) were synthesized via ring-opening polymerization to improve on polylactide homopolymer properties for commercial applications. OSL has properties that improve some of the deficiencies of polylactide, including polylactide’s limitations for use in food, beverage and medical applications due to its high water permeability and low ultraviolet light (UV) blocking capabilities. DVL was incorporated into these polymers to add flexibility. The addition of DVL to the polymer had a positive effect on the tensile strain properties of the resultant terpolymer, resulting in a more flexible polymer with a reduced Young’s modulus. Water vapor transmission rate calculations confirmed that water vapor was transported more slowly through terpolymer films than through the PLLA homopolymer under varying hygrostatic conditions. While the addition of DVL increased UV permeability, the addition of even a small amount of lignin can effectively counteract this effect.     

Ecosystem services in mountain regions: experts’ perceptions and research intensity

Facing the challenges of global and regional changes, society urgently needs applicable and broadly accepted tools to effectively manage and protect ecosystem services (ES). This requires knowing which ES are perceived as important. We asked decision-makers from different thematic backgrounds to rank 25 ES on the basis of their importance for society. To test whether perceptions are varying across regions, we surveyed three Alpine regions in Austria and Italy. The ranking of importance showed a high variability amongst experts but was not influenced by region or thematic background. ES that satisfy physiological needs (‘fresh water’, ‘food’, ‘air quality regulation’) were indicated as most important. ES that relate to safety and security needs were ranked in the middle field, whereas cultural ES were perceived as less important. We used principal component analysis (PCA) to identify ES bundles based on perception of importance. In order to investigate whether research intensity follows the perceived importance, we related the interviews with a comprehensive literature review. ‘Global climate regulation’, ‘food’, ‘biodiversity’, ‘fresh water’ and ‘water quality’ were studied most often. Although ‘habitat’, ‘energy’, ‘primary production’, ‘tourism’, ‘water cycle’, and ‘local climate regulation’ were ranked as important by decision-makers, they did not receive corresponding research attention. We conclude that more interaction between research and stakeholders is needed to promote a broader application and understanding of the ES concept in practice. The use of ES bundles could help to manage its inherent complexity and facilitate its application.     

Steady states and sensitivities of commonly used pelagic ecosystem model components

Pelagic, coupled ocean circulation-ecosystem models, are widely used in climate research. These tools aim to quantify fluxes of nutrients and carbon in the ocean and are, increasingly, the base of future projections. For this purpose it is crucial to quantify and identify the sources of uncertainties. In contrast to physical models, the underlying equations for ecosystem models are derived from empirical relationships rather than based on first principles. This resulted in the development of a multitude of different ecosystem models - different in respect to both, underlying principles and complexity. Clearly, the question arises, to what extent the sensitivities of these models are comparable.This study focuses on the intrinsic dynamics of some widely used, simple (containing 2-3 prognostic variables) ecosystem models in a 0-D framework (i.e., comprising only the well-mixed oceanic surface layer). A suite of differing model approaches is tuned such that their behavior is similar. The setup resembles the well-mixed oceanic surface layer in the Baltic proper. It is illustrated that strong differences between the model approaches appear due to exemplary, anticipated changes in the external nutrient and light conditions. Herewith, we demonstrate the well-known, but rarely demonstrated fact that, apparent consistency between modeled prognostic variables with today's data bases is not necessarily a good measure of forecast skill. The causes which lead to the different sensitivities are illustrated by considering the steady state solutions. It is pointed out, that apparently small changes in the model formulations can result in very different dynamical behavior and an enormous spread between the model approaches, despite the feasibility to tune a common behavior in a limited range of light and nutrient supply. In our examples, the sensitivity is mainly a function of the formulation of the loss rate of phytoplankton. It is thus, in particular, the formulation of highly unknown heteorotrophic processes that determines the model sensitivity.     

A new approach to investigate the interactions between sediment transport and ecotoxicological processes during flood events

Purpose

The 'step-by step' principle was introduced into the European Union legislation on genetically modified organisms as a means to cope with uncertainty about environmental risks from the release of genetically modified organisms into the environment. The approval process is orientated along the stepwise reduction of containment which reflects a precautionary approach towards the risks of genetically modified organism release. Thus, the gradual reduction of containment should keep pace with the gradual generation of risk-related knowledge. This paper strives to clarify the meaning, legal status and practical importance of the principle. It also looks at whether non-European Union countries have adopted the principle as well, and how they practice it.

Methods

The article is based on research of the relevant legal texts, court cases and legal literature. In addition, a number of dossiers of applications for the European Union authorisation of release and placing on the market of genetically modified seed were analysed.

Results and conclusions

Although 'step-by-step' is not a precise legal rule it does have legal meaning as a principle guiding the risk assessment and management of genetically modified organism introduction into the environment. Assuming a process of gradual reduction of containment and scaling up of release ranging from closed systems via experimental release to cultivation the 'step-by-step principle' requires that the knowledge on environmental risks of genetically modified organisms should be generated on stages previous to the ones where the risk can result in damage. The analysis of the legislation of China, the United States of America and Brazil showed a differentiated approach towards the step-by-step principle.