贵州喀斯特山区不同种植年限花椒根际土壤细菌群落结构特征研究

以贵州花江峡谷花椒(Zanthoxylum bungeamun)林为研究对象,采用16S rRNA高通量测序技术,分析种植5、10、20、30 a花椒根际土壤细菌群落结构和多样性特征,探讨不同种植年限花椒土壤理化因子对根际细菌群落分布的影响,为喀斯特石漠化地区花椒农业可持续发展提供有效的理论依据。结果表明,随着花椒种植年限的增加,土壤含水率、pH和有效磷逐渐升高,有机质、铵态氮和硝态氮含量先降低后升高(P<0.05)。根际土壤细菌Shannon、Simpson指数总体呈现上升趋势,OTUs、Chao1指数在10a较低。PCo A分析显示,不同种植年限花椒根际细菌群落组成差异显著,并且随着年限的增加,群落结构趋于相似;差异指示种分析表明,5—30a差异指示种分别为Firmicutes(厚壁菌门)、Cyanobacteria(蓝藻菌门)、Planctomycetes(浮霉菌门)、Entotheonellaeota(肠杆菌门)。RDA分析表明,有机质和含水率与细菌群落分布显著相关(P<0.05)。系统发育多样性分析表明,丰富类群多样性与环境因子存在较多的正相关,稀有类群比丰富类群有更强的发育信号。Bug Base预测分析发现:随着年限增加根际土壤好氧细菌增加,厌氧细菌下降,5、10 a氧化胁迫耐受菌低于20、30 a,致病菌在5、10 a高于20、30 a。综上,种植年限影响了花椒根际土壤细菌群落多样性,不同年限根际土壤肥力不同使得土壤细菌选择性生长,随着一定时间发育花椒抗病能力提高。     

Effects of site-selection bias on estimates of biodiversity change

Estimates of biodiversity change are essential for the management and conservation of ecosystems. Accurate estimates rely on selecting representative sites, but monitoring often focuses on sites of special interest. How such site-selection biases influence estimates of biodiversity change is largely unknown. Site-selection bias potentially occurs across four major sources of biodiversity data, decreasing in likelihood from citizen science, museums, national park monitoring, and academic research. We defined site-selection bias as a preference for sites that are either densely populated (i.e., abundance bias) or species rich (i.e., richness bias). We simulated biodiversity change in a virtual landscape and tracked the observed biodiversity at a sampled site. The site was selected either randomly or with a site-selection bias. We used a simple spatially resolved, individual-based model to predict the movement or dispersal of individuals in and out of the chosen sampling site. Site-selection bias exaggerated estimates of biodiversity loss in sites selected with a bias by on average 300–400% compared with randomly selected sites. Based on our simulations, site-selection bias resulted in positive trends being estimated as negative trends: richness increase was estimated as 0.1 in randomly selected sites, whereas sites selected with a bias showed a richness change of −0.1 to −0.2 on average. Thus, site-selection bias may falsely indicate decreases in biodiversity. We varied sampling design and characteristics of the species and found that site-selection biases were strongest in short time series, for small grains, organisms with low dispersal ability, large regional species pools, and strong spatial aggregation. Based on these findings, to minimize site-selection bias, we recommend use of systematic site-selection schemes; maximizing sampling area; calculating biodiversity measures cumulatively across plots; and use of biodiversity measures that are less sensitive to rare species, such as the effective number of species. Awareness of the potential impact of site-selection bias is needed for biodiversity monitoring, the design of new studies on biodiversity change, and the interpretation of existing data.     

Boosting freshwater fish conservation with high-resolution distribution mapping across a large territory

The lack of high-resolution distribution maps for freshwater species across large extents fundamentally challenges biodiversity conservation worldwide. We devised a simple framework to delineate the distributions of freshwater fishes in a high-resolution drainage map based on stacked species distribution models and expert information. We applied this framework to the entire Chinese freshwater fish fauna (>1600 species) to examine high-resolution biodiversity patterns and reveal potential conflicts between freshwater biodiversity and anthropogenic disturbances. The correlations between spatial patterns of biodiversity facets (species richness, endemicity, and phylogenetic diversity) were all significant (r = 0.43–0.98, p < 0.001). Areas with high values of different biodiversity facets overlapped with anthropogenic disturbances. Existing protected areas (PAs), covering 22% of China's territory, protected 25–29% of fish habitats, 16–23% of species, and 30–31% of priority conservation areas. Moreover, 6–21% of the species were completely unprotected. These results suggest the need for extending the network of PAs to ensure the conservation of China's freshwater fishes and the goods and services they provide. Specifically, middle to low reaches of large rivers and their associated lakes from northeast to southwest China hosted the most diverse species assemblages and thus should be the target of future expansions of the network of PAs. More generally, our framework, which can be used to draw high-resolution freshwater biodiversity maps combining species occurrence data and expert knowledge on species distribution, provides an efficient way to design PAs regardless of the ecosystem, taxonomic group, or region considered.     

Diverging response patterns of terrestrial and aquatic species to hydromorphological restoration

Although experiences with ecological restoration continue to accumulate, the effectiveness of restoration for biota remains debated. We complemented a traditional taxonomic analysis approach with information on 56 species traits to uncover the responses of 3 aquatic (fish, macroinvertebrates, macrophytes) and 2 terrestrial (carabid beetles, floodplain vegetation) biotic groups to 43 hydromorphological river restoration projects in Germany. All taxonomic groups responded positively to restoration, as shown by increased taxonomic richness (10–164%) and trait diversity (habitat, dispersal and mobility, size, form, life history, and feeding groups) (15–120%). Responses, however, were stronger for terrestrial than aquatic biota, and, contrary to our expectation, taxonomic responses were stronger than those of traits. Nevertheless, trait analysis provided mechanistic insights into the drivers of community change following restoration. Trait analysis for terrestrial biota indicated restoration success was likely enhanced by lateral connectivity and reestablishment of dynamic processes in the floodplain. The weaker response of aquatic biota suggests recovery was hindered by the persistence of stressors in the aquatic environment, such as degraded water quality, dispersal constraints, and insufficient hydromorphological change. Therefore, river restoration requires combined local- and regional-scale approaches to maximize the response of both aquatic and terrestrial organisms. Due to the contrasting responses of aquatic and terrestrial biota, the planning and assessment of river restoration outcomes should consider effects on both components of riverine landscapes.     

16S rDNA克隆文库解析AO-MBR系统中细菌种群多样性

采用分子生物学手段16S rDNA克隆文库方法对缺氧/好氧膜生物反应器(AO-MBR)的好氧池与缺氧池中细菌进行了多样性研究.实验结果表明,好氧池污泥样品的克隆文库包括9个类群,其中变形菌(Proteobacteria)和拟杆菌(Bacteroidetes)在文库中所占比例最大,分别为37.04％和14.81％;其次是酸杆菌(Acidobacteria)、未培养菌(uncultured bacterium)、绿菌(Chlorobi)和未培养的绿弯菌(uncultured Chloroflexi bacterium)、浮霉状菌(Planctomycetes),分别为11.11％、11.11％、7.41％、7.41％和5.56％;硝化螺旋菌(Nitrospirae)和裸藻门(Euglenozoa)所占比例相对较小,均为1.85％.缺氧池样品克隆文库包括10个类群,其中变形菌(Proteobacteria)、拟杆菌(Bacteroidetes)和未培养菌(uncultured bacterium)在文库中所占比例最大,分别为27.91％、13.95％和12.79％;其次是浮霉状菌(Planctomycetes)、酸杆菌(Acidobacteria)和绿弯菌(Chloroflexi),在文库中所占比例分别为9.3％、9.3％和9.3％;硝化螺旋菌(Nitrospirae)、裸藻门(Euglenozoa)、芽单胞菌(Gemmatimonadetes)和放线菌(Actinobacteria)所占比例相对较少,分别为6.98％、8.14％、1.16％和1.16％.两池细菌的主要类群相似,但菌属及比例有所差异,变形菌是系统中的主要脱氮菌属.     

EGSB出水回流对EGSB—SBR工艺处理果汁废水的影响

采用EGSB—SBR工艺处理实际果汁废水(COD 2 608~6 500 mg/L,p H 5.0~7.0)。在EGSB反应器成功启动及驯化完成的情况下,连续运行49 d。实验结果表明:第25天起,控制EGSB回流比为3.00∶1,EGSB反应器可在无须添加Na HCO3的条件下稳定运行,从而降低了废水处理成本;第25天起,平均进水COD,BOD5,SS分别为5 968,2 130,1 020 mg/L,平均出水COD,BOD5,SS分别降至131,11,50 mg/L,平均COD,BOD5,SS去除率分别为98%,99%,95%;组合工艺对该实际果汁废水具有良好的处理效果。     

佳乐麝香对萝卜种子发芽及DNA损伤的生态毒理影响

由于佳乐麝香(HHCB)被广泛应用于日用化工产品中,被持续不断地释放到环境中,所产生的生态风险已引起越来越多的重视。为探究HHCB的生态毒性效应,在水培条件下考察了不同浓度HHCB对萝卜的表观生长指标(发芽率、根伸长抑制率、芽伸长抑制率)和基于随机引物扩增多态性(RAPD)图谱的根尖DNA损伤状况。研究结果显示:低剂量(≤25 mg·L~(-1))胁迫对萝卜发芽无显著影响(P0.05);高剂量(≥50 mg·L~(-1))胁迫可以显著抑制萝卜发芽率(P0.05)。萝卜的根长和芽长抑制率随HHCB浓度增加而呈上升趋势,且根伸长对HHCB胁迫较芽伸长更敏感,更适宜指示HHCB对植物的生态毒性效应。萝卜根尖基因组DNA的RAPD分析结果表明:大于或等于5 mg·L~(-1)的HHCB即可明显导致萝卜根尖基因组DNA损伤,且随着HHCB浓度的升高,根尖基因组DNA含量呈线性降低,DNA多态率增加,基因组模板稳定性(GTS)减小,遗传相似性变远。这表明较低剂量的HHCB胁迫就能够导致萝卜根尖基因组DNA损伤,且随浓度升高而损伤严重。因此,利用RAPD技术获得的萝卜DNA多态性变化可作为检测HHCB遗传毒性效应的敏感生物标记物,为化学品污染生态毒理早期诊断提供科学依据。     

Epigenetic effect of long-term bisphenol A exposure on human breast adenocarcinoma cells

In this research, epigenetic effects of bisphenol A (BPA) on human breast cancer MCF-7 cells were analyzed. Genome-wide DNA methylation and gene expression were analyzed in MCF-7 cells exposed to BPA (10^?5 and 10^?6 mol/L for 5 weeks). No significant changes in the global level of 5-methyl-2′-deoxycytidine and 5-hydroxymethyl-2′-deoxycytidine were observed. DNA methylation profiling analysis indicated that BPA exposure resulted in the hypermethylation of FOXK2, LKB1, LMX1A and CUGBP2 and the hypomethylation of PTPRN2, TRIM27, BCAS3 and ZNF423. Decreased expression of apoptosis genes (P38 and BCL2L1) and increased expression of chemokine (Cxcl2 and ccl20) were detected. Changes of these genes were speculated to affect the ERα-related cell growth as well as cell apoptosis.     

Using environmental and geographic data to optimize ex situ collections and preserve evolutionary potential

Maintenance of biodiversity through seed banks and botanical gardens, where the wealth of species’ genetic variation may be preserved ex situ, is a major goal of conservation. However, challenges can persist in optimizing ex situ collections if trade-offs exist among cost, effort, and conserving species evolutionary potential, particularly when genetic data are not available. We evaluated the genetic consequences of population preservation informed by geographic (isolation by distance [IBD]) and environmental (isolation by environment [IBE]) distance for ex situ collections for which population provenance is available. We used 19 genetic and genomic data sets from 15 plant species to assess the proportion of population genetic differentiation explained by geographic and environmental factors and to simulate ex situ collections prioritizing source populations based on pairwise geographic distance, environmental distance, or both. Specifically, we tested the impact prioritizing sampling based on these distances may have on the capture of neutral, functional, or putatively adaptive genetic diversity and differentiation. Individually, IBD and IBE explained limited population genetic differences across all 3 genetic marker classes (IBD, 10–16%; IBE, 1–5.5%). Together, they explained a substantial proportion of population genetic differences for functional (45%) and adaptive (71%) variation. Simulated ex situ collections revealed that inclusion of IBD, IBE, or both increased allelic diversity and genetic differentiation captured among populations, particularly for loci that may be important for adaptation. Thus, prioritizing population collections based on environmental and geographic distance data can optimize genetic variation captured ex situ. For the vast majority of plant species for which there is no genetic information, these data are invaluable to conservation because they can guide preservation of genetic variation needed to maintain evolutionary potential within collections.     

浮游动物DNA宏条形码标志基因比较研究

DNA宏条形码技术作为一种新型生物监测方法,在未来生态环境监测中有巨大的应用潜力。目前,浮游动物DNA宏条形码监测仍在发展阶段,需要首先对其(采样方法、引物选择和数据分析等)进行标准化和调整,然后才能用于常规流域生态监测。其中,如何选择合适的PCR扩增引物是DNA宏条形码生物监测标准化的关键问题之一。本研究比较了COI、18SV9和16S通用引物在浮游动物DNA宏条形码监测中的差异,为初步建立规范化的浮游动物DNA宏条形码监测方法提供技术支撑。结果表明,16S引物对浮游动物具有更好的特异性,其产生的操作分类单元(operational taxonomic unit, OTU)有88.1%属于浮游动物。虽然18SV9引物具有更高的物种覆盖度,不仅能扩增出浮游动物,还能扩增出大量藻类和真菌,但其物种识别敏感性较差,不适合浮游动物物种水平多样性监测。COI引物的浮游动物物种特异性、物种覆盖度和物种识别敏感性都适中,检出的浮游动物物种数量高于18SV9引物和16S引物,更加适合浮游动物DNA宏条形码监测。