Near-term forecasts of stream temperature using deep learning and data assimilation in support of management decisions

Deep learning (DL) models are increasingly used to make accurate hindcasts of management-relevant variables, but they are less commonly used in forecasting applications. Data assimilation (DA) can be used for forecasts to leverage real-time observations, where the difference between model predictions and observations today is used to adjust the model to make better predictions tomorrow. In this use case, we developed a process-guided DL and DA approach to make 7-day probabilistic forecasts of daily maximum water temperature in the Delaware River Basin in support of water management decisions. Our modeling system produced forecasts of daily maximum water temperature with an average root mean squared error (RMSE) from 1.1 to 1.4°C for 1-day-ahead and 1.4 to 1.9°C for 7-day-ahead forecasts across all sites. The DA algorithm marginally improved forecast performance when compared with forecasts produced using the process-guided DL model alone (0%–14% lower RMSE with the DA algorithm). Across all sites and lead times, 65%–82% of observations were within 90% forecast confidence intervals, which allowed managers to anticipate probability of exceedances of ecologically relevant thresholds and aid in decisions about releasing reservoir water downstream. The flexibility of DL models shows promise for forecasting other important environmental variables and aid in decision-making.     

Boosting large-scale river connectivity restoration by planning for the presence of unrecorded barriers

Conservation decisions are invariably made with incomplete data on species’ distributions, habitats, and threats, but frameworks for allocating conservation investments rarely account for missing data. We examined how explicit consideration of missing data can boost return on investment in ecosystem restoration, focusing on the challenge of restoring aquatic ecosystem connectivity by removing dams and road crossings from rivers. A novel way of integrating the presence of unmapped barriers into a barrier optimization model was developed and applied to the U.S. state of Maine to maximize expected habitat gain for migratory fish. Failing to account for unmapped barriers during prioritization led to nearly 50% lower habitat gain than was anticipated using a conventional barrier optimization approach. Explicitly acknowledging that data are incomplete during project selection, however, boosted expected habitat gains by 20–273% on average, depending on the true number of unmapped barriers. Importantly, these gains occurred without additional data. Simply acknowledging that some barriers were unmapped, regardless of their precise number and location, improved conservation outcomes. Given incomplete data on ecosystems worldwide, our results demonstrate the value of accounting for data shortcomings during project selection.     

Patterns and biases of climate change threats in the IUCN Red List

International Union for Conservation of Nature (IUCN) Red List assessments rely on published data and expert inputs, and biases can be introduced where underlying definitions and concepts are ambiguous. Consideration of climate change threat is no exception, and recently numerous approaches to assessing the threat of climate change to species have been developed. We explored IUCN Red List assessments of amphibians and birds to determine whether species listed as threatened by climate change display distinct patterns in terms of habitat occupied and additional nonclimatic threats faced. We compared IUCN Red List data with a published data set of species’ biological and ecological traits believed to infer high vulnerability to climate change and determined whether distributions of climate change‐threatened species on the IUCN Red List concur with those of climate change‐threatened species identified with the trait‐based approach and whether species possessing these traits are more likely to have climate change listed as a threat on the IUCN Red List. Species in some ecosystems (e.g., grassland, shrubland) and subject to particular threats (e.g., invasive species) were more likely to have climate change as a listed threat. Geographical patterns of climate change‐threatened amphibians and birds on the IUCN Red List were incongruent with patterns of global species richness and patterns identified using trait‐based approaches. Certain traits were linked to increases or decreases in the likelihood of a species being threatened by climate change. Broad temperature tolerance of a species was consistently related to an increased likelihood of climate change threat, indicating counterintuitive relationships in IUCN assessments. To improve the robustness of species assessments of the vulnerability or extinction risk associated with climate change, we suggest IUCN adopt a more cohesive approach whereby specific traits highlighted by our results are considered in Red List assessments. To achieve this and to strengthen the climate change‐vulnerability assessments approach, it is necessary to identify and implement logical avenues for further research into traits that make species vulnerable to climate change (including population‐level threats).     

Spatial interactions in habitat conservation: Evidence from prairie pothole easements

We examine the role of spatial interactions in conservation easements placed on prairie pothole habitat in western Canada. One of the goals of the conservation easement program we study is to protect contiguous habitat. We identify endogenous spatial interactions among conservation easements and government protected land, independent of spatially correlated landscape features and local economic shocks that influence easement enrollment. We present evidence that easements increase the likelihood of subsequent easements on neighboring land. Government-protected land appears to have little effect on the location of conservation easements. These results imply that conservation agencies have leveraged past conservation investment to enroll more contiguous habitat in permanent easements through a combination of targeting and positive social interactions among neighboring landowners.     

Validating graph-based connectivity models with independent presence–absence and genetic data sets

Habitat connectivity is a key objective of current conservation policies and is commonly modeled by landscape graphs (i.e., sets of habitat patches [nodes] connected by potential dispersal paths [links]). These graphs are often built based on expert opinion or species distribution models (SDMs) and therefore lack empirical validation from data more closely reflecting functional connectivity. Accordingly, we tested whether landscape graphs reflect how habitat connectivity influences gene flow, which is one of the main ecoevolutionary processes. To that purpose, we modeled the habitat network of a forest bird (plumbeous warbler [Setophaga plumbea]) on Guadeloupe with graphs based on expert opinion, Jacobs’ specialization indices, and an SDM. We used genetic data (712 birds from 27 populations) to compute local genetic indices and pairwise genetic distances. Finally, we assessed the relationships between genetic distances or indices and cost distances or connectivity metrics with maximum-likelihood population-effects distance models and Spearman correlations between metrics. Overall, the landscape graphs reliably reflected the influence of connectivity on population genetic structure; validation R² was up to 0.30 and correlation coefficients were up to 0.71. Yet, the relationship among graph ecological relevance, data requirements, and construction and analysis methods was not straightforward because the graph based on the most complex construction method (species distribution modeling) sometimes had less ecological relevance than the others. Cross-validation methods and sensitivity analyzes allowed us to make the advantages and limitations of each construction method spatially explicit. We confirmed the relevance of landscape graphs for conservation modeling but recommend a case-specific consideration of the cost-effectiveness of their construction methods. We hope the replication of independent validation approaches across species and landscapes will strengthen the ecological relevance of connectivity models.     

Efficacy of created and restored nesting sites for the conservation of colonial Laridae in the South of France

By rapidly modifying key habitat components, habitat restoration is at risk of producing attractive cues for animals without providing habitats of sufficient quality. As such, individual fitness components, such as reproduction, could be reduced and restored habitats could become ecological traps. This risk notably appears by using artificial constructions in restoration projects, yet few studies have evaluated their efficacy in a robust way. We investigated this by analyzing 154 islets that were created or restored to improve the conservation status of 7 colonial Laridae species in the South of France. From 2007 to 2016, we compared occupancy dynamics and breeding parameters of these species between the restored sites and 846 unmanaged nesting sites. We also explored species’ preference for different nesting site characteristics and their respective effect on breeding parameters. Restored nesting sites were 2–9 times as attractive as unmanaged sites for all species except the Black-headed Gull (Chroicocephalus ridibundus). Colonization probability was up to 100 times higher in sites already used by other species the previous year and increased with distance to the shore until >0.2 when distance was over 250 m. Abandonment probability was 29–70% lower when breeding was successful the previous year in all species except the Sandwich Tern (Thalasseus sandvicensis). Productivity and breeding success probability were 2 times higher on managed sites. Distance from the shore was an important attractive characteristic of artificial nesting sites in all species. Other nesting site characteristics had species-specific effects on colonization, abandonment, and breeding success. Our results indicate that managed nesting sites are successful conservation tools for colonial Laridae in the Mediterranean and do not act as ecological traps. Our study showed that testing the ecological trap hypothesis is a robust way to evaluate the success of restoration projects of breeding habitats.     

广西邦亮东黑冠长臂猿栖息地的气候资源分析

气候资源是影响动物行为、发育、存活、繁殖与分布等的重要因子。为了探明广西邦亮东黑冠长臂猿栖息地的气候环境特征,对其栖息地附近县(乡)的主要气象要素进行统计与分析。结果表明:广西邦亮东黑冠长臂猿栖息地年均日照时数为1 521.8小时,月变幅为25.44%;年均气温为19.1℃,最冷月平均气温为11.0℃,最热月平均气温为25.0℃;年均降雨量为1 606.3 mm,月变幅为86.05%;年均蒸发量为1 507.1 mm,月变幅为28.06%;年均相对湿度为80%,月变幅为2.60%;年均风速为1.5 m/s,月变幅为15.4%。     

湖滨湿地恢复方案研究综述

在查阅国内外湖滨湿地恢复资料的基础上,以恢复湿地水质净化和野生动物栖息地功能为双重目的,整理形成了适用于我国富营养湖泊湖滨湿地的恢复方案,从恢复湿地的设计、恢复的前期处理、恢复过程中的植物种植与管理、恢复后的维护管理和生态监测等5个阶段进行了恢复技术的综述与探讨。     

Integrated assessment of river health based on water quality, aquatic life and physical habitat

The health conditions of Liao River were assessed using 25 sampling sites in April 2005, with water quality index, biotic index and physical habitat quality index. Based on the method of cluster analysis (CA) for water quality indices, it revealed that heavily polluted sites of Liao River are located at estuary and mainstream. The aquatic species surveyed were attached algae and benthic invertebrates. The result showed that the diversity and biomass of attached algae and benthic index of biotic integrity (B-IBI) were degrading as the chemical and physical quality of water bodies deteriorating. Physiochemical parameters, BOD5, CODCr, TN, TP, NH3-N, DO, petroleum hydrocarbon and conductivity, were statistically analyzed with principal component analysis and correlation analysis. The statistical results were incorporated into the integrated assessing water quality index, combining fecal coliform count, attached algae diversity, B-IBI and physical habitat quality score. A comprehensive integrated assessing system of river ecological health was established. Based on the systimetic assesment, the assessed sites are categorized into 9 “healthy” and “sub-healthy” sites and 8 “sub-sick” and “sick” sites.     

乌梁素海湿地鸟类栖息地生态服务功能评估探讨

本文通过收集近30年鸟类种类及种群数据变化的资料,分析乌粱素海不同鸟类栖息环境的栖息地服务功能,从而评估鸟梁素海湿地鸟类栖息地的综合生态服务功能。评估结果表明：乌梁素海湿地鸟类栖息地综合生态服务功能为不好。