Initial design process of the sustainability science ontology for knowledge-sharing to support co-deliberation

Implementation of the sustainability science (SS) approach is often difficult because of poor communication between experts from different academic fields. We focused on ontology engineering as a method of knowledge structuring that supports the co-deliberation process. However, SS is too broad for a few experts to construct an ontology because SS targets and covers almost all existing research fields from the viewpoint of problem-solving. The N-iteration process is required for completing an SS ontology. In the present paper, we discuss the initial design process for constructing an ontology on SS from the aspect of a knowledge-sharing tool to support co-deliberation. First, we identified the SS ontology by referring to the existing literature. Second, we traced the structuring process of the SS ontology, which is independent of the existing research domain. Third, we compared the SS ontology with existing ontologies or concept structures on SS. Fourth, we assessed the SS ontology produced in the initial process in terms of relevance and coverage and addressed areas for improvement in order to facilitate co-deliberation among researchers from different domains. As a result of developing the SS ontology and applying it to the mapping tool that we developed based on the ontology, we found the following three points: the SS ontology enables us to define concepts relevant to SS without overlapping by distinguishing part-of and attribute-of relationships at the upper level of the ontology; the SS-based mapping tool successfully represents the potential countermeasures required by the targeted problem for all scientific fields except experimental engineering; however, the SS ontology requires further improvement in order to represent the conceptual linkage arising from compound and secondary problems and the fulfillment of classes at the lower hierarchy of Shortage problem, and requires slots for the entire hierarchy. In addition, based on the discussion of the areas for improvement, we found that missing slots and classes should be added in the process in which we use or improve tools corresponding to a variety of requirements for supporting co-deliberation. In this way, we are able to propose an incremental process for constructing the SS ontology from the aspect of a knowledge-sharing tool to support co-deliberation.     

Possible involvement of frontier (π) electrons in the metabolism of poly-chlorinated biphenyls (PCBs)

The electron density, at each carbon atom, of the highest occupied π orbital of thirteen polychlorinated biphenyl (PCB) and one polychlorinated dibenzofuran (PCDF) molecules were calculated and the result was compared with their in vitro and/or in vivo metabolism. We noted that 1. the carbon position at which the frontier electron density was highest was most readily hydroxylated or sulfonated, 2. if the carbon with the highest frontier (π) electrons was occupied by chlorine, either a replacement occurred or the carbon with the next highest electron density was activated for metabolism, 3. due to steric hinderance ‘ortho’ carbons in PCBs were least preferred for such reactions inspite of possessing favorable electron density, 4. this was applicable to both phenobarbitol (PB) - type and 3-methyl cholanthrene (3 MC) - type PCB inducers. Frontier (π) electron density could be an easy guide for understanding the metabolic products of persistent and toxic environmental pollutants in vitro or in vivo and in understanding their environmental fate.     

Dependence of mechanochemically induced decomposition of mono-chlorobiphenyl on the occurrence of radicals

Mechanochemically induced dechlorination of mono-chlorobiphenyl (BP-Cl) on the surfaces of metal oxides was compared with that on metal hydroxides, using the three metals of Mg, Al, and La as examples. The metal oxides, such as gamma-alumina (gamma-Al2O3), magnesium oxide (MgO) and lanthanum oxide (La2O3) showed an efficient ability to dechlorinate the BP-Cl; however, BP-Cl remained in the ground samples when the hydroxides were used. From the product analysis using gas chromatography/mass spectrometry (GC/MS) and electron spin resonance (ESR) measurements, it was confirmed that the charge transfer from the O2- site on the surface of the oxide additives due to the intense grinding has plays a significant role in the decomposition of the chlorinated compound. Based on the observed dependence of the dechlorination on the radical occurrence, some practical methods were proposed to improve the destruction efficiency of the chlorinated organic compounds.     

Toward knowledge structuring of sustainability science based on ontology engineering

In sustainability science (SS), it is difficult to identify what needs to be solved, and it is also not clear how to solve the problems that are identified. There has been no consensus on the underlying question of “What is structuring knowledge in SS?” This paper focuses on knowledge structuring accompanied by supporting of thinking. It addresses the key challenges associated with knowledge structuring in SS, identifies the requirements for the structuring of knowledge, proposes a reference model, and develops an ontology-based mapping tool as a solution to one layer of the reference model. First, we identify the important requirements for SS knowledge structuring. Second, we develop a reference model composed of five layers based on three of the requirements. Third, we develop an ontology-based mapping tool at Layer 2 of the reference model for meeting the two major challenges for SS, namely, identifying what problems should be addressed in SS itself and proposing solutions for those problems. The tool is designed to store and retrieve information regarding SS, to provide access to a prototype ontology for SS, and to create multiple maps of conceptual chains depending on a user’s interests and perspectives. Finally, we assess whether the developed tool successfully realizes the targeted part of the reference model for SS by examining the tool’s conformity to the reference model, as well as its usability, effectiveness, and constraints. Although several issues were identified in the prototype ontology and the mapping tool, the study concluded that the mapping tool is useful enough to facilitate the function of Layer 2. In particular, the mapping tool can support thinking about SS from the viewpoint of: (a) finding new potentials and risks of technological countermeasures studied in SS; (b) helping users to get a more comprehensive picture of problems and their potential solutions; and (c) providing an effective opportunity to come up with new ideas that might not be thought of without such a tool.     

Identification of odorous compounds in air and gas from painting and printing industries by gas chromatography-mass spectrometry and library search system

A computer-assisted library search system is described consisting of a data base, pre-search and main search. Odorous air and effluent gas from painting and printing industries were analyzed by gas chromatography-mass spectrometry and the library search system. Main components were 2-methylpropanol, three xylenes, toluene, ethyl acetate and butyl acetate.     

mRNA expression of a cadmium-responsive gene is a sensitive biomarker of cadmium exposure in the soil collembolan Folsomia candida

The gene expression of environmental organisms is useful as a biomarker of environmental pollution. One of its advantages is high sensitivity. We identified the cDNA of a novel cadmium-responsive gene in the soil collembolan Folsomia candida. The deduced protein, designated “metallothionein-like motif containing protein” (MTC), was cysteine-rich and contained a metallothionein-like motif with similarity to metallothionein, but had a much longer sequence than metallothionein and contained repeated sequences of amino acids. Expression of MTC mRNA was sensitively induced by cadmium exposure at 0.3 mg/kg of dry food, a concentration at which toxic effects are not observed, but expression was not affected by γ-ray exposure (an inducer of oxidative stress). These findings suggest that MTC is involved in cadmium-binding processes rather than in oxidative-stress responses. In conclusion, we suggest that gene expression of MTC may be a candidate biomarker for detecting low levels of cadmium contamination in soil.     

Episodic release of methane bubbles from peatland during spring thaw

Methane (CH(4)) flux into the atmosphere during spring thaw was investigated in a small ombrotrophic peatland (141 degrees 48'E, 43 degrees 19'N, Japan) using the conventional chamber method. More than 50 chamber deployments on top of the snow cover were carried out and continued for more than 165h until the surface snow and underlying ice cover on top of the peat layer had thawed completely. Methane emissions were almost absent in the presence of snow cover. At the very moment the surface ice cover thawed, a large CH(4) flush (>10mgCH(4)m(-2)h(-1)) was recorded, which was on the same order of magnitude as episodic ebullition previously observed in the high-summer. Gas bubbles trapped in the ice layer on top of the waterlogged peat were preliminarily analyzed for the volumetric percentage in the total ice volume and their gas species compositions. Results showed that the bubbles occupied about 3.2% volume and that the mixing ratio of CH(4) in the bubbles was about 20%. The abundance of the bubble-form CH(4) was sufficient to explain the observed episodic CH(4) release during the thaw. Results of this study show that CH(4) emissions during the thaw season have great temporal variability; emission occurs as an episodic release of bubble-form CH(4) stored in the frozen layer. The results also imply the possibility that gas-phase CH(4) plays an important role, not only during the growing season but also in cold-season CH(4) dynamics in northern peatlands.     

Isomer‐specific determination and toxic evaluation of potentially hazardous coplanar PCBs,dibenzofurans and dioxins in the tissues of “Yusho” PCB poisoning victim and in the causal oil

In the light of new discoveries on the extremely toxic non‐ortho coplanar 3,3’,4,4'‐tetra‐ (T₄CB), 3,3’,4,4’,5‐penta‐(P₅CB) and 3,3'4,4’,5,5'‐hexachlorobiphenyl (H₆CB) and their mono‐ and di‐ortho analogs, tissue samples of a Yusho poisoning victim and Yusho causal oils were subjected to a thorough congener/isomer‐specific investigation for polychlorinated biphenyls (PCBs), polychlorinated dibenzofurans (PCDFs), polychlorinated dibenzo‐p‐dioxins (PCDDs). Among the many PCB congeners detected in Yusho oil, non‐ortho coplanar T₄CB constituted 3.1%, P₅CB‐0.17% and H₆CB‐0.0072% in total PCBs. Their concentrations in liver and adipose tissue were 130–700 (T₄CB), 54–720 (P₅CB) and 50–380 (H₆CB) pg/g on wet weight basis. The observed concentrations in adipose tissue were two to four fold higher than that detected in unexposed individuals. Among the PCDFs identified, toxic 2,3,7,8‐substituted isomers including 2,3,4,7,8‐P₅CDF were the dominant ones. Tetra‐ through hepta‐CDDs were detected in the oil, whereas octa‐CDD was the dominant isomer in the patient. A comparison with KC‐400 revealed enrichment of coplanar PCBs in Yusho oil along with toxic PCDFs. Enrichment was highest for 3,3'4,4'5,5'‐H₆CB followed by 3,3’,4,4'5‐P₅CB. A comparative toxic evaluation of these chemical groups in Yusho patient's adipose tissue based on “2,3,7,8‐T₄CDD Toxic Equivalent Analysis” revealed accountable toxic contribution from coplanar PCBs. This analysis also confirmed that 2,3,4,7,8‐P₅CDF was the principal causative agent in Yusho poisoning.     

Formation and decomposition of tetrafluoroborate ions in the presence of aluminum

The formation and decomposition of tetrafluoroborate ions (BF₄⁻) in H₃BO₃-Al³⁺-F⁻ solutions were investigated via experiments and thermodynamic calculations. The concentration of the formed BF₄⁻ increased with decreasing pH, raising the total fluoride concentration and lowering the total aluminum ion concentration. Once formed, BF₄⁻ was stable under neutral and alkaline conditions. Fluoride in the form of BF₄⁻ was converted to fluoroaluminate ions by adding an aluminum compound under acidic conditions. A method for removing fluoride in the form of BF₄⁻ is proposed whereby fluoroaluminate ions formed by the reaction of BF₄⁻ with aluminum are decomposed with calcium ions. This process was applied to the treatment of wastewater from flue gas desulfurization plants, and resulted in a satisfying level of reduction in the range of the fluoride emission limit of 8 mg/l.