Long-term effects of sustained beef feedlot manure application on soil nutrients, corn silage yield, and nutrient uptake

A field study was initiated in 1992 to investigate the long-term impacts of beef feedlot manure application (composted and uncomposted) on nutrient accumulation and movement in soil, corn silage yield, and nutrient uptake. Two application strategies were compared: providing the annual crop nitrogen (N) requirement (N-based rate) or crop phosphorus (P) removal (P-based rate), as well as a comparison to inorganic fertilizer. Additionally, effects of a winter cover crop were evaluated. Irrigated corn (Zea mays L.) was produced annually from 1993 through 2002. Average silage yield and crop nutrient removal were highest with N-based manure treatments, intermediate with P-based manure treatments, and least with inorganic N fertilizer. Use of a winter cover crop resulted in silage yield reductions in four of ten years, most likely due to soil moisture depletion in the spring by the cover crop. However, the cover crop did significantly reduce NO3-N accumulation in the shallow vadose zone, particularly in latter years of the study. The composted manure N-based treatment resulted in significantly greater soil profile NO3-N concentration and higher soil P concentration near the soil surface. The accounting procedure used to calculate N-based treatment application rates resulted in acceptable soil profile NO3-N concentrations over the short term. While repeated annual manure application to supply the total crop N requirement may be acceptable for this soil for several years, sustained application over many years carries the risk of unacceptable soil P concentrations.     

Using the ECLPSS software environment to build a spatially explicit component-based model of ozone effects on forest ecosystems

We have developed a modeling framework to support grid-based simulation of ecosystems at multiple spatial scales, the Ecological Component Library for Parallel Spatial Simulation (ECLPSS). ECLPSS helps ecologists to build robust spatially explicit simulations of ecological processes by providing a growing library of reusable interchangeable components and automating many modeling tasks. To build a model, a user selects components from the library, and then writes new components as needed. Some of these components represent specific ecological processes, such as how environmental factors influence the growth of individual trees. Other components provide simulation support such as reading and writing files in various formats to allow inter-operability with other software. The framework manages components and variables, the order of operations, and spatial interactions. The framework provides only simulation support; it does not include ecological functions or assumptions. This separation allows biologists to build models without becoming computer scientists, while computer scientists can improve the framework without becoming ecologists. The framework is designed to operate on multiple platforms and be used across networks via a World Wide Web-based user interface. ECLPSS is designed for use with both single processor computers for small models, and multiple processors in order to simulate large regions with complex interactions among many individuals or ecological compartments. To test Version 1.0 of ECLPSS, we created a model to evaluate the effect of tropospheric ozone on forest ecosystem dynamics. This model is a reduced-form version of two existing models: , which represents an individual tree, and , which represents forest stand growth and succession. This model demonstrates key features of ECLPSS, such as the ability to examine the effects of cell size and model structure on model predictions.     

Incidence and persistence of zoonotic bacterial and protozoan pathogens in a beef cattle feedlot runoff control vegetative treatment system

Determining the survival of zoonotic pathogens in livestock manure and runoff is critical for understanding the environmental and public health risks associated with these wastes. The occurrence and persistence of the bacterial pathogens Escherichia coli O157:H7 and Campylobacter spp. in a passive beef cattle feedlot runoff control-vegetative treatment system were examined over a 26-mo period. Incidence of the protozoans Cryptosporidium spp. and Giardia spp. was also assessed. The control system utilizes a shallow basin to collect liquid runoff and accumulate eroded solids from the pen surfaces; when an adequate liquid volume is attained, the liquid is discharged from the basin onto a 4.5-ha vegetative treatment area (VTA) of bromegrass which is harvested as hay. Basin discharge transported E. coli O157, Campylobacter spp., and generic E. coli into the VTA soil, but without additional discharge from the basin, the pathogen prevalences decreased over time. Similarly, the VTA soil concentrations of generic E. coli initially decreased rapidly, but lower residual populations persisted. Isolation of Cryptosporidium oocysts and Giardia cysts from VTA samples was infrequent, indicating differences in sedimentation and/or transport in comparison to bacteria. Isolation of generic E. coli from freshly cut hay from VTA regions that received basin discharge (12 of 30 vs. 1 of 30 control samples) provided evidence for the risk of contamination; however, neither E. coli O157 or Campylobacter spp. were recovered from the hay following baling. This work indicates that the runoff control system is effective for reducing environmental risk by containing and removing pathogens from feedlot runoff.     

Extensions to minimum relative entropy inversion for noisy data

Minimum relative entropy (MRE) and Tikhonov regularization (TR) were compared by Neupauer et al. [Water Resour. Res. 36 (2000) 2469] on the basis of an example plume source reconstruction problem originally proposed by Skaggs and Kabala [Water Resour. Res. 30 (1994) 71] and a boxcar-like function. Although Neupauer et al. [Water Resour. Res. 36 (2000) 2469] were careful in their conclusions to note the basis of these comparisons, we show that TR does not perform well on problems in which delta-like sources are convolved with diffuse-groundwater contamination response functions, particularly in the presence of noise. We also show that it is relatively easy to estimate an appropriate value for epsilon, the hyperparameter needed in the minimum relative entropy solution for the inverse problem in the presence of noise. This can be estimated in a variety of ways, including estimation from the data themselves, analysis of data residuals, and a rigorous approach using the real cepstrum and the Akaike Information Criterion (AIC). Regardless of the approach chosen, for the sample problem reported herein, excellent resolution of multiple delta-like spikes is produced from MRE from noisy, diffuse data. The usefulness of MRE for noisy inverse problems has been demonstrated.     

Chronic ozone exposure alters the growth of leaves, stems and roots of hybrid Populus

Rooted cuttings of hybrid Populus (DN34, Populus deltoides x nigra) were grown outdoors in pots in open-top chambers at Ithaca, NY (74.5 degrees W, 42.5 degrees N), during 1988 and 1989 (experiment 1) and during 1989 and 1990 (experiment 2). Ambient air was passed through charcoal filters to produce a 0.5 times ambient ozone treatment, and ozone generated from oxygen was added to produce one and two times ambient ozone treatments. In experiment 1, treatments were applied for 8-12 h each day for 112 days of the 1988 growing season, then the plants were grown outdoors with ambient ozone in 1989. In experiment 2, treatments were applied for 9 h each day for 98 days of the 1989 growing season, then the plants were grown outdoors with ambient ozone in 1990. Chronic exposure to ozone caused the following changes (statistically significant in one or both experiments at p<0.05): (1) earlier leaf abscission, (2) decreased stem basal diameter, (3) decreased stem mass, (4) decreased internode length, (5) decreased shoot height p=0.005, and (6) decreased leaf size in the growing season following ozone treatment. There was also strong evidence that ozone increased the number of leaves produced p=0.055. Finally, there was some evidence that ozone increased the ratio of shoot mass to root mass p=0.093.     

Links among nitrification, nitrifier communities, and edaphic properties in contrasting soils receiving dairy slurry

Soil biotic and abiotic factors strongly influence nitrogen (N) availability and increases in nitrification rates associated with the application of manure. In this study, we examine the effects of edaphic properties and a dairy (Bos taurus) slurry amendment on N availability, nitrification rates and nitrifier communities. Soils of variable texture and clay mineralogy were collected from six USDA-ARS research sites and incubated for 28 d with and without dairy slurry applied at a rate of ~300 kg N ha(-1). Periodically, subsamples were removed for analyses of 2 M KCl extractable N and nitrification potential, as well as gene copy numbers of ammonia-oxidizing bacteria (AOB) and archaea (AOA). Spearman coefficients for nitrification potentials and AOB copy number were positively correlated with total soil C, total soil N, cation exchange capacity, and clay mineralogy in treatments with and without slurry application. Our data show that the quantity and type of clay minerals present in a soil affect nitrifier populations, nitrification rates, and the release of inorganic N. Nitrogen mineralization, nitrification potentials, and edaphic properties were positively correlated with AOB gene copy numbers. On average, AOA gene copy numbers were an order of magnitude lower than those of AOB across the six soils and did not increase with slurry application. Our research suggests that the two nitrifier communities overlap but have different optimum environmental conditions for growth and activity that are partly determined by the interaction of manure-derived ammonium with soil properties.     

A solid-phase microextraction chamber method for analysis of manure volatiles

Odors from livestock operations are a complex mixture of volatile carbon, sulfur, and nitrogen compounds. Currently, detailed volatiles analysis is both time consuming and requires specialized equipment and methods. This work describes a new method that utilizes a dynamic flux chamber, solid-phase microextraction (SPME), and gas chromatography-mass spectroscopy (GC-MS) to describe and compare the odorous compounds emitted from cattle and swine feces. Evaluation of method parameters produced a protocol for comparing relative emissions based on fixed sample temperature (20 degrees C) and exposed surface area (approximately 523 cm(2)), air flow rates (1 L min(-1) or 16 cm s(-1)), SPME exposure time (5 min), and chamber cleaning procedures (70% ethanol rinse and drying for 30 min at 105 degrees C) to minimize cross-contamination between samples. A variety of volatile organic compounds (VOCs) including alcohols, volatile fatty acids, aromatic ring compounds, ketones, esters, and sulfides were routinely detected and the relative emissions from fresh and incubated (37 degrees C overnight) swine and cattle feces were compared as a measure of potential to produce odorants during manure storage. Differences in the types and relative quantities of volatiles emitted were detected when animal species (cattle or swine), diet, fecal incubation, or sample storage conditions (20, 4, or -20 degrees C) were varied.     

Using electromagnetic induction technology to predict volatile fatty acid, source area differences

Subsurface measures have been adapted to identify manure accumulation on feedlot surfaces. Understanding where manure accumulates can be useful to develop management practices that mitigate air emissions from manure, such as odor or greenhouse gases. Objectives were to determine if electromagnetic induction could be used to predict differences in volatile fatty acids (VFA) and other volatiles produced in vitro from feedlot surface material following a simulated rain event. Twenty soil samples per pen were collected from eight pens with cattle fed two different diets using a predictive sampling approach. These samples were incubated at room temperature for 3 d to determine fermentation products formed. Fermentation products were categorized into acetate, straight-, branched-chained, and total VFAs. These data were used to develop calibration prediction models on the basis of properties measured by electromagnetic induction (EMI). Diet had no significant effect on mean volatile solids (VS) concentration of accumulated manure. However, manure from cattle fed a corn (Zea mays L.)-based diet had significantly ( P ≤ 0.1) greater mean straight-chained and total VFA generation than pens where wet distillers grain with solubles (WDGS) were fed. Alternately, pens with cattle fed a WDGS-based diet had significantly (P ≤ 0.05) greater branched-chained VFAs than pens with cattle fed a corn-based diet. Many branched-chain VFAs have a lower odor threshold than straight-chained VFAs; therefore, emissions from WDGS-based diet manure would probably have a lower odor threshold. We concluded that diets can affect the types and quantities of VFAs produced following a rain event. Understanding odorant accumulation patterns and the ability to predict generation can be used to develop precision management practices to mitigate odor emissions.     

Simple protocols to determine dust potentials from cattle feedlot soil and surface samples

Cattle feedlot dust is an annoyance and may be a route for nutrient transport, odor emission, and pathogen dispersion, but important environmental factors that contribute to dust emissions are poorly characterized. A general protocol was devised to test feedlot samples for their ability to produce dust under a variety of environmental conditions. A blender was modified to produce dust from a variety of dried feedlot surface and soil samples and collect airborne particles on glass fiber filters by vacuum collection. A general blending protocol optimized for sample volume (150-175 cm3), blending time (5 min of pre-blending), and dust collection time (15 s) provided consistent dust measurements for all samples tested. The procedure performed well on samples that varied in organic matter content, but was restricted to samples containing less than 200 to 700 g H2O kg(-1) dry matter (DM). When applied to field samples, the technique demonstrated considerable spatial variability between feedlot pen sites. Mechanistically, dust potential was related to moisture and organic matter content. An alternative protocol also demonstrated differences within pen sites in maximum dust potential and dust airborne residence time. The two protocols were not intended, nor are they suitable, for predicting actual particulate matter emissions from agricultural sources. Rather, the protocols rapidly and inexpensively compared the potential for dust emission from samples of differing composition under a variety of environmental conditions.     

Chronic ozone exposure increases the susceptibility of hybrid Populus to disease caused by Septoria Musiva

Rooted cuttings of hybrid Populus (DN34, Populus deltoides X nigra) were grown outdoors in pots in open-top chambers at Ithaca, NY (74.5 degrees W, 42.5 degrees N), during 1988 and 1989 (Experiment 1) and during 1989 and 1990 (Experiment 2). Ambient air was passed through charcoal filters to produce a 0.5 times ambient ozone treatment, and ozone generated from oxygen was added to produce one and two times ambient ozone treatments. In Experiment 1, treatments were applied for 8-12 h each day for 112 days of the 1988 growing season; then the plants were grown outdoors with ambient ozone in 1989. In Experiment 2, treatments were applied for 9 h each day for 98 days of the 1989 growing season; then the plants were grown outdoors with ambient ozone in 1990. Shallow wounds were made into the bark tissue and inoculated with either an aqueous suspension of conidia of Mycosphaerella populorum or sterile water on 1 and 2 September 1988 (Experiment 1) or 16 and 17 August 1989 (Experiment 2). In Experiment 1, wounds were inoculated either 0, 7, or 14 days after wounding. In Experiment 2, wounds were inoculated either 0, 3, or 6 days after wounding. Canker development was measured after harvest on 16 and 17 July 1989 (Experiment 1) and 28 May 1990 (Experiment 2). In both experiments, chronic exposure to ozone significantly increased the incidence of canker formation in inoculated wounds, and no cankers formed in wounds that received only sterile water. In Experiment 1, cankers formed only on plants inoculated the same day as wounding. No cankers formed on plants inoculated either 7 or 14 days after wounding. In Experiment 2, cankers formed on plants inoculated on the same day as wounding, and on a few plants inoculated 3 days after wounding. No cankers formed on plants inoculated 6 days after wounding. Additionally, in Experiment 2, exposure to increased concentrations of ozone caused a significantly higher number of plants to die during the subsequent winter. Analysis of partial correlation coefficients among plant growth and plant disease variables suggested that the observed ozone-induced increase in the susceptibility of the plants to disease was not mediated by alterations in plant growth.