The Novel and Endemic Pathogen Hypotheses: Competing Explanations for the Origin of Emerging Infectious Diseases of Wildlife

Abstract:  Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis , is an emerging infectious disease implicated in declines of amphibian populations around the globe. An emerging infectious disease is one that has recently been discovered; has recently increased in incidence, geography, or host range; or is newly evolved. For any given outbreak of an emerging disease, it is therefore possible to state two hypotheses regarding its origin. The novel pathogen hypothesis states that the disease has recently spread into new geographic areas, whereas the endemic pathogen hypothesis suggests that it has been present in the environment but recently has increased in host range or pathogenicity. Distinguishing between these hypotheses is important, because the conservation measures needed to slow or stop the spread of a novel pathogen are likely to differ from those needed to prevent outbreaks of an endemic pathogen. Population genetics may help discriminate among the possible origins of an emerging disease. Current evidence suggests chytridiomycosis may be a novel pathogen being spread worldwide by carriers; until we know how much genetic variation to expect in an endemic strain, however, we cannot yet conclude that B. dendrobatidis is a novel pathogen.     

Permeability of Roads to Movement of Scrubland Lizards and Small Mammals

A primary objective of road ecology is to understand and predict how roads affect connectivity of wildlife populations. Road avoidance behavior can fragment populations, whereas lack of road avoidance can result in high mortality due to wildlife‐vehicle collisions. Many small animal species focus their activities to particular microhabitats within their larger habitat. We sought to assess how different types of roads affect the movement of small vertebrates and to explore whether responses to roads may be predictable on the basis of animal life history or microhabitat preferences preferences. We tracked the movements of fluorescently marked animals at 24 sites distributed among 3 road types: low‐use dirt, low‐use secondary paved, and rural 2‐lane highway. Most data we collected were on the San Diego pocket mouse (Chaetodipus fallax), cactus mouse (Peromyscus eremicus), western fence lizard (Sceloporus occidentalis), orange‐throated whiptail (Aspidoscelis hyperythra), Dulzura kangaroo rat (Dipodomys simulans) (dirt, secondary paved), and deer mouse (Peromyscus maniculatus) (highway only). San Diego pocket mice and cactus mice moved onto dirt roads but not onto a low‐use paved road of similar width or onto the highway, indicating they avoid paved road substrate. Both lizard species moved onto the dirt and secondary paved roads but avoided the rural 2‐lane rural highway, indicating they may avoid noise, vibration, or visual disturbance from a steady flow of traffic. Kangaroo rats did not avoid the dirt or secondary paved roads. Overall, dirt and secondary roads were more permeable to species that prefer to forage or bask in open areas of their habitat, rather than under the cover of rocks or shrubs. However, all study species avoided the rural 2‐lane highway. Our results suggest that microhabitat use preferences and road substrate help predict species responses to low‐use roads, but roads with heavy traffic may deter movement of a much wider range of small animal species.     

Desires and Management Preferences of Stakeholders Regarding Feral Cats in the Hawaiian Islands

Feral cats are abundant in many parts of the world and a source of conservation conflict. Our goal was to clarify the beliefs and desires held by stakeholders regarding feral cat abundance and management. We measured people's desired abundance of feral cats in the Hawaiian Islands and identified an order of preference for 7 feral cat management techniques. In 2011 we disseminated a survey to 5407 Hawaii residents. Approximately 46% of preidentified stakeholders and 20% of random residents responded to the survey (1510 surveys returned). Results from the potential for conflict index revealed a high level of consensus (86.9% of respondents) that feral cat abundance should be decreased. The 3 most common explanatory variables for respondents’ stated desires were enjoyment from seeing feral cats (84%), intrinsic value of feral cats (12%), and threat to native fauna (73%). The frequency with which respondents saw cats and change in the perceived abundance of cats also affected respondent's desired abundance of cats; 41.3% of respondents stated that they saw feral cats daily and 44.7% stated that the cat population had increased in recent years. Other potential environmental impacts of feral cats had little affect on desired abundance. The majority of respondents (78%) supported removing feral cats from the natural environment permanently. Consensus convergence models with data from 1388 respondents who completed the relevant questions showed live capture and lethal injection was the most preferred technique and trap‐neuter‐release was the least preferred technique for managing feral cats. However, the acceptability of each technique varied among stakeholders. Our results suggest that the majority of Hawaii's residents would like to see effective management that reduces the abundance of feral or free‐roaming cats. Deseos y Preferencias de Manejo de las Partes Interesadas con Respecto a los Gatos Ferales en las Islas Hawaianas.     

Long-Term Landscape Change and Bird Abundance in Amazonian Rainforest Fragments

Abstract:  The rainforests of the Amazon basin are being cut by humans at a rate >20,000 km²/year, leading to smaller and more isolated patches of forest, with remaining fragments often in the range of 1–100 ha. We analyzed samples of understory birds collected over 20 years from a standardized mist-netting program in 1– to 100-ha rainforest fragments in a dynamic Amazonian landscape near Manaus, Brazil. Across bird guilds, the condition of second growth immediately surrounding fragments was often as important as fragment size or local forest cover in explaining variation in abundance. Some fragments surrounded by 100 m of open pasture showed reductions in insectivorous bird abundance of over 95%, even in landscapes dominated by continuous forest and old second growth. These extreme reductions may be typical throughout Amazonia in small (≤10 ha), isolated fragments of rainforest. Abundance for some guilds returned to preisolation levels in 10- and 100-ha fragments connected to continuous forest by 20-year-old second growth. Our results show that the consequences of Amazonian forest loss cannot be accurately described without explicit consideration of vegetation dynamics in matrix habitat. Any dichotomous classification of the landscape into "forest" and "nonforest" misses essential information about the matrix.     

Patch Size and Connectivity Thresholds for Butterfly Habitat Restoration

Abstract:  Recovery of endangered species in highly fragmented habitats often requires habitat restoration. Selection of restoration sites typically involves too many options and too much uncertainty to reach a decision based on existing reserve design methods. The Fender's blue butterfly (  Icaricia icarioides fenderi ) survives in small, isolated patches of remnant prairie in Oregon's Willamette Valley—a habitat for which <0.5% of the original remains. Recovery of this species will require considerable habitat restoration. We investigated the potential of biologically based rules of thumb and more complex models to serve as tools in making land acquisitions. Based on Fender's blue dispersal behavior and demography, we have estimated that restored patches should be <1 km from existing habitat and at least 2 ha. We compared these rules to the results of two modeling approaches: an incidence function model and a spatially explicit simulation of demography and dispersal behavior. Not surprisingly, the simple rules and complex models all conclude that large (>2 ha) connected (<1 km) patches have the highest restoration value. The dispersal model, however, suggests that small, connected patches have more restoration value than large, isolated patches, whereas the incidence function model suggests that size and connectivity are equally important. These differences stem from model assumptions. We used incidence functions to predict long-term, stochastic, steady-state conditions and dispersal simulations to predict short-term (25-year) colonization dynamics. To apply our results in the context of selecting restoration sites on the ground, we recommend selecting nearby sites when short-term colonization dynamics are expected to be an important aspect of a species' biology.     

Costs and Benefits of Trap‐Neuter‐Release and Euthanasia for Removal of Urban Cats in Oahu,Hawaii

Our goal was to determine whether it is more cost‐effective to control feral cat abundance with trap‐neuter‐release programs or trap and euthanize programs. Using STELLA 7, systems modeling software, we modeled changes over 30 years in abundance of cats in a feral colony in response to each management method and the costs and benefits associated with each method . We included costs associated with providing food, veterinary care, and microchips to the colony cats and the cost of euthanasia, wages, and trapping equipment in the model. Due to a lack of data on predation rates and disease transmission by feral cats the only benefits incorporated into the analyses were reduced predation on Wedge‐tailed Shearwaters (Puffinus pacificus). When no additional domestic cats were abandoned by owners and the trap and euthanize program removed 30,000 cats in the first year, the colony was extirpated in at least 75% of model simulations within the second year. It took 30 years for trap‐neuter‐release to extirpate the colony. When the cat population was supplemented with 10% of the initial population size per year, the colony returned to carrying capacity within 6 years and the trap and euthanize program had to be repeated, whereas trap‐neuter‐release never reduced the number of cats to near zero within the 30‐year time frame of the model. The abandonment of domestic cats reduced the cost effectiveness of both trap‐neuter‐release and trap and euthanize. Trap‐neuter‐release was approximately twice as expensive to implement as a trap and euthanize program. Results of sensitivity analyses suggested trap‐neuter‐release programs that employ volunteers are still less cost‐effective than trap and euthanize programs that employ paid professionals and that trap‐neuter‐release was only effective when the total number of colony cats in an area was below 1000. Reducing the rate of abandonment of domestic cats appears to be a more effective solution for reducing the abundance of feral cats. Costos y Beneficios de Captura‐Esterilización‐Liberación y Eutanasia para la Remoción de Gatos Urbanos en Oahu, Hawaii     

Biodiversity Conservation in Agricultural Landscapes: Challenges and Opportunities of Coffee Agroforests in the Western Ghats,India

Abstract: The new approaches advocated by the conservation community to integrate conservation and livelihood development now explicitly address landscape mosaics composed of agricultural and forested land rather than only protected areas and largely intact forests. We refer specifically to a call by Harvey et al. (2008) to develop a new approach based on six strategies to integrate biodiversity conservation with sustainable livelihoods in Mesoamerican landscape mosaics. We examined the applicability of this proposal to the coffee agroforests of the Western Ghats, India. Of the six strategies, only one directly addresses livelihood conditions. Their approach has a clear emphasis on conservation and, as currently formulated risks repeating the failures of past integrated conservation and development projects. It fails to place the aspirations of farmers at the core of the agenda. Thus, although we acknowledge and share the broad vision and many of the ideas proposed by this approach, we urge more balanced priority setting by emphasizing people as much as biodiversity through a careful consideration of local livelihood needs and aspirations.